CSC

	Tehdyt toimenpiteet General Index - A B C D E F G I L M N O P Q R S T U V W - -- -config -fofn -no_win -nowin -win_compact -win_separate a Adding modules ALF/ABI to SCF conversion configuration ALF/ABI to SCF conversion module Arguments, command line ATQA configuration ATQA module Augment Experiment files configuration Augment Experiment files module Augment, by line types Augment, by text database b Batch mode Blast screen configuration Blast screen module c Cap2 assembly configuration Cap2 assembly module Cap3 assembly configuration Cap3 assembly module Cloning vector clip configuration Cloning vector clip configuration (old style) Cloning vector clip module Cloning vector clip module (old style) Colours Command line arguments Component configuration Components Compress Trace Files configuration Compress Trace Files module Configuration files configuration files: pregap4 Configuration: pregap4 low level Configuring modules Configuring pregap4 convert_trace Cross_match configuration Cross_match module d Database integration Database, plain text format e Email configuration Email module Enter assembly configuration Enter assembly module Estimate base accuracies configuration Estimate base accuracies module Example code Experiment File line types Extract sequence configuration Extract Sequence module f FakII assembly configuration FakII assembly module FASTA files: pregap4 Files, specifying Fonts Functions, builtin Functions, in modules g Gap4 shotgun assembly configuration Gap4 shotgun assembly module General configuration configuration General configuration module Global variables i Include config component Information sources Initialise Experiment Files configuration Initialise Experiment files module Interactive clipping configuration Interactive clipping module Introduction l Line types, in experiment file Load naming scheme low level pregap4 configuration m Module functions Module variables Module, example code Modules, adding and removing Modules, configuring Modules, creating Modules, overview Mutation detection configuration Mutation detection module Mutation detection naming scheme Mutation scanner module n Naming schemes Naming schemes, creating. naming schemes: mutation detection naming schemes: pregap4 Non-interactive processing o Old cloning vector clip configuration p Phrap assembly configuration Phrap assembly module Phred configuration Phred module Pregap4 pregap4: FASTA files pregap4: naming schemes pregap4: Reference sequence pregap4: temporary files pregap4rc files q quality clip configuration Quality clip module r Reference sequence: pregap4 Reference trace module Removing modules RepeatMasker configuration RepeatMasker module Run command s Sanger Centre naming scheme, new Sanger Centre naming scheme, old Screen for unclipped vector configuration Screen for unclipped vector module Screen sequences configuration Screen sequences module Sequencing vector clip configuration Sequencing vector clip module Shutdown configuration Simple Text Database Styles of windows t Tag repeats configuration Tag repeats module temporary files Trace difference module Trace Format Conversion Trace Format Conversion configuration u Uncalled base clip configuration v Variables, global to all modules Variables, in modules w Window styles This page is maintained by staden-package. Last generated on 25 April 2003. URL: http://www.mrc-lmb.cam.ac.uk/pubseq/manual/pregap4_unix_95.html