Staden at CSC

Pregap4 - Pregap4-Modules-Cap2 Assembly

Cap2 Assembly

Cap2 is not included as part of the Staden Package. It is available from Xiaoqiu Huang ( huang@mtu.edu ).

Description: This module uses the cap2 program to perform shotgun assembly. Output will be placed in the fofn.assembly directory, where fofn is the filename prefix listed in the "Files to Process" panel. The output is in a format suitable for directed assembly within gap4. This can also be performed by using the "Enter Assembly into Gap4" module.
There are no adjustable parameters for this module.

This page is maintained by staden-package. Last generated on 25 April 2003.
URL: http://www.mrc-lmb.cam.ac.uk/pubseq/manual/pregap4_unix_40.html


	Tehdyt toimenpiteet Pregap4 - Pregap4-Modules-Cap2 Assembly Cap2 Assembly Cap2 is not included as part of the Staden Package. It is available from Xiaoqiu Huang ( huang@mtu.edu ). Description This module uses the `cap2` program to perform shotgun assembly. Output will be placed in the fofn.assembly directory, where fofn is the filename prefix listed in the "Files to Process" panel. The output is in a format suitable for directed assembly within gap4. This can also be performed by using the "Enter Assembly into Gap4" module. There are no adjustable parameters for this module. This page is maintained by staden-package. Last generated on 25 April 2003. URL: http://www.mrc-lmb.cam.ac.uk/pubseq/manual/pregap4_unix_40.html