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Sciences and methods > Biosciences > Programs > Staden > Manual


	Tehdyt toimenpiteet Spin - Table of Contents Spin Organisation of the Spin Manual Introduction Summary of the Spin Single Sequence Functions Summary of the Spin Comparison Functions Introduction to the Spin User Interface Introduction to the Spin Plot Introduction to the Spin Sequence Display Introduction to the Spin Sequence Comparison Plot Introduction to the Spin Sequence Comparison Display Spin Menus Spin File Menu Spin View Menu Spin Options Menu Spin Sequences Menu Spin Statistics Menu Spin Translation Menu Spin Search Menu Spin Comparison Menu Spin Emboss Menu Spin's Analytical Functions Count Sequence Composition Count Dinucleotide Frequencies Plot base composition Calculate codon usage Set genetic code Translation - general Find open reading frames Restriction enzyme search Selecting Enzymes Examining the Plot Reconfiguring the Plot Printing the sites Subsequence search Motif search Gene finding Start codon search Stop codon search Codon usage method Positional base preferences Author test Uneven positional base preferences Splice site search tRNA search Spin Comparison Functions Finding Similar Spans Finding Matching Words Finding the Best Diagonals Aligning Sequences Globally Aligning Sequences Locally Controlling and Managing Results Probabilities and expected numbers of matches Changing the maximum number of matches Changing the default number of matches Hide duplicate matches Changing the score matrix Set protein alignment symbols The Spin User Interface SPIN Sequence Plot Cursors Crosshairs Zoom Drag and drop Sequence display Search Save SPIN Sequence Comparison Plot Cursors Crosshairs Zoom Drag and drop Sequence Comparison Display Controlling and Managing Results Result manager Information List Configure Hide Reveal Remove Reading and Managing Sequences Use of feature tables in spin Reading in sequences Simple search Extracting a sequence from a personal archive file Sequence manager Change the active sequence Set the range Copy Sequence Sequence type Complement sequence Interconvert t and u Translate sequence Scramble sequence Rotate sequence Save sequence Delete sequence Selecting a sequence Index This document was generated on 25 April 2003 using the texi2html translator version 1.39 (with local modifications) This page is maintained by staden-package. Last generated on 25 April 2003. URL: http://www.mrc-lmb.cam.ac.uk/pubseq/manual/spin_unix_49.html