Tehdyt toimenpiteet
Spin's Analytical Functions
- Count Sequence composition
- Dinucleotide frequencies
- Plot base composition
- Subsequence search
- Calculate codon usage
- Set genetic code
- Translation - general
- Find open reading frames
- Start codon search
- Stop codon search
- Codon usage method
- Positional base preferences
- Author test
- Uneven positional base frequencies
- Splice site search
- Motif search
- tRNA search
- Finding Similar Spans
- Finding Matching Words
- Aligning Sequences Locally
- Finding the Best Diagonals
- Aligning Sequences Globally
Spin contains both simple and sophisticated analytical functions, mostly producing graphical results. The following sections describe the functions, approximately in order of increasing complexity.
This page is maintained by staden-package. Last generated on 25 April 2003.
URL: http://www.mrc-lmb.cam.ac.uk/pubseq/manual/spin_unix_10.html