CSC

% ontogetobsolete edam:alignment -subclasses 
Get ontology ontology terms
Obo output file [0000083.obo]: 

Get ontology ontology terms
Version: EMBOSS:6.4.0.0

   Standard (Mandatory) qualifiers:
  [-oboterms]          obo        Obo term filename and optional format, or
                                  reference (input query)
  [-outfile]           outobo     [*.ontogetobsolete] Output ontology term
                                  file name

   Additional (Optional) qualifiers:
   -subclasses         boolean    [N] Extend the query matches to include all
                                  terms which are specialisations
                                  (sub-classes) of the matched terms.

   Advanced (Unprompted) qualifiers: (none)
   Associated qualifiers:

   "-oboterms" associated qualifiers
   -iformat1           string     Input obo format
   -idbname1           string     User-provided database name

   "-outfile" associated qualifiers
   -odirectory2        string     Output directory
   -oformat2           string     Ontology term output format

   General qualifiers:
   -auto               boolean    Turn off prompts
   -stdout             boolean    Write first file to standard output
   -filter             boolean    Read first file from standard input, write
                                  first file to standard output
   -options            boolean    Prompt for standard and additional values
   -debug              boolean    Write debug output to program.dbg
   -verbose            boolean    Report some/full command line options
   -help               boolean    Report command line options and exit. More
                                  information on associated and general
                                  qualifiers can be found with -help -verbose
   -warning            boolean    Report warnings
   -error              boolean    Report errors
   -fatal              boolean    Report fatal errors
   -die                boolean    Report dying program messages
   -version            boolean    Report version number and exit

[Term]
id: EDAM:0000083
name: Alignment
namespace: topic
def: Study concerning the alignment (equivalence between sites) of molecular sequences, structures or profiles (representing a sequence or structure alignment).
subset: topic
is_obsolete: true
consider: EDAM:0000182 ! Sequence alignment
consider: EDAM:0000183 ! Structure alignment
consider: EDAM:0000184 ! Threading

[Term]
id: EDAM:0002928
name: Alignment
namespace: operation
def: Compare two or more entities, typically the sequence or structure (or derivatives) of macromolecules, to identify equivalent subunits.
subset: operation
is_a: EDAM:0000004 ! Operation
is_a: EDAM:0002951 ! Alignment processing
relationship: has_output EDAM:0001916 ! Alignment {minCardinality=1}

[Term]
id: EDAM:0001916
name: Alignment
namespace: data
def: An alignment of molecular sequences, structures or profiles derived from them.
subset: data
is_a: EDAM:0002539 ! Alignment data

[Term]
id: EDAM:0000083
name: Alignment
namespace: topic
def: Study concerning the alignment (equivalence between sites) of molecular sequences, structures or profiles (representing a sequence or structure alignment).
subset: topic
is_obsolete: true
consider: EDAM:0000182 ! Sequence alignment
consider: EDAM:0000183 ! Structure alignment
consider: EDAM:0000184 ! Threading