CSC

% edamisformat sequence 
Find EDAM ontology terms by is_format_of relation
Obo output file [edamisformat.obo]: 

Find EDAM ontology terms by is_format_of relation
Version: EMBOSS:6.4.0.0

   Standard (Mandatory) qualifiers:
  [-identifier]        string     Identifier(s) to search for in ontology (Any
                                  string)
  [-outfile]           outobo     [*.edamisformat] Output ontology term file
                                  name

   Additional (Optional) qualifiers:
   -namespace          menu       [*] By default all terms are returned.
                                  Searches can be limited to one or a few
                                  namespaces. (Values: data (Data entity);
                                  entity (Biological entity); format (Data
                                  format); identifier (Identifier); operation
                                  (Bioinformatics operation); resource (Data
                                  resource); topic (Field of bioinformatics
                                  study))

   Advanced (Unprompted) qualifiers:
   -sensitive          boolean    [N] By default, the query keywords are
                                  matched against the EDAM term names (and
                                  synonyms) only. This option also matches the
                                  keywords against the EDAM term definitions
                                  and will therefore (typically) report more
                                  matches.
   -subclasses         boolean    [N] Extend the query matches to include all
                                  terms which are specialisations (EDAM
                                  sub-classes) of the matched type.
   -obsolete           boolean    [N] The default behaviour is to not use or
                                  return obsolete terms. This option if set
                                  will include all terms.

   Associated qualifiers:

   "-outfile" associated qualifiers
   -odirectory2        string     Output directory
   -oformat2           string     Ontology term output format

   General qualifiers:
   -auto               boolean    Turn off prompts
   -stdout             boolean    Write first file to standard output
   -filter             boolean    Read first file from standard input, write
                                  first file to standard output
   -options            boolean    Prompt for standard and additional values
   -debug              boolean    Write debug output to program.dbg
   -verbose            boolean    Report some/full command line options
   -help               boolean    Report command line options and exit. More
                                  information on associated and general
                                  qualifiers can be found with -help -verbose
   -warning            boolean    Report warnings
   -error              boolean    Report errors
   -fatal              boolean    Report fatal errors
   -die                boolean    Report dying program messages
   -version            boolean    Report version number and exit

[Term]
id: EDAM:0002078
name: Sequence range format
namespace: format
def: Format used to specify range(s) of sequence positions.
subset: format
is_a: EDAM:0002350 ! Format (typed)
relationship: is_format_of EDAM:0001017 ! Sequence range

[Term]
id: EDAM:0002571
name: Raw sequence format
namespace: format
def: Format of a raw molecular sequence (i.e. the alphabet used).
subset: format
is_a: EDAM:0002350 ! Format (typed)
relationship: is_format_of EDAM:0000848 ! Raw sequence

[Term]
id: EDAM:0001921
name: Alignment format
namespace: format
def: Data format for molecular sequence alignment information.
subset: format
is_a: EDAM:0002350 ! Format (typed)
relationship: is_format_of EDAM:0000863 ! Sequence alignment

[Term]
id: EDAM:0001919
name: Sequence record format
namespace: format
def: Data format for a molecular sequence record.
subset: format
is_a: EDAM:0002350 ! Format (typed)
relationship: is_format_of EDAM:0000849 ! Sequence record

[Term]
id: EDAM:0002057
name: Sequence trace format
namespace: format
def: Format for sequence trace data (i.e. including base call information).
subset: format
is_a: EDAM:0001919 ! Sequence record format
relationship: is_format_of EDAM:0000924 ! Sequence trace

[Term]
id: EDAM:0002014
name: Sequence-profile alignment format
namespace: format
def: Data format for a sequence-profile alignment.


  [Part of this file has been deleted for brevity]

namespace: format
def: Data format for a molecular sequence record, typically corresponding to a full entry from a molecular sequence database.
subset: format
is_a: EDAM:0001919 ! Sequence record format
relationship: is_format_of EDAM:0002201 ! Sequence record full

[Term]
id: EDAM:0002067
name: Sequence distance matrix format
namespace: format
def: Format of a matrix of genetic distances between molecular sequences.
subset: format
is_a: EDAM:0002350 ! Format (typed)
relationship: is_format_of EDAM:0000870 ! Sequence distance matrix

[Term]
id: EDAM:0002066
name: Database hits (sequence) format
namespace: format
def: Format of a report on sequence hits and associated data from searching a sequence database.
subset: format
is_a: EDAM:0002350 ! Format (typed)
relationship: is_format_of EDAM:0000857 ! Database hits (sequence)

[Term]
id: EDAM:0002921
name: Sequence variation annotation format
namespace: format
def: Format of sequence variation annotation.
subset: format
is_a: EDAM:0002350 ! Format (typed)
relationship: is_format_of EDAM:0000918 ! Sequence variation annotation

[Term]
id: EDAM:0002170
name: Sequence cluster format
namespace: format
def: Format used for clusters of molecular sequences.
subset: format
is_a: EDAM:0002350 ! Format (typed)
relationship: is_format_of EDAM:0001235 ! Sequence cluster

[Term]
id: EDAM:0001920
name: Sequence feature annotation format
namespace: format
def: Data format for molecular sequence feature information.
subset: format
is_a: EDAM:0002350 ! Format (typed)
relationship: is_format_of EDAM:0001255 ! Sequence features