CSC

show_relationships

show_relationships
 -io            io_handle:integer
?-contigs       identifiers:strings()?
?-order         order:integer(1)?

This command performs the Gap4 Show Relationships function. The function returns no value but will generate a Tcl error if an error occurs.

-io io_handle

The database IO handle returned from a previous open_db call.

-contigs identifiers

Specifies single segments of contigs for which to display the relationships data. In the current implementation only the first contig (and start and end position) in the identifier list is processed. Not specifying any contigs (which is the default) will make show_relationships process all contigs.

-order order

Controls whether the output should be sorted on positional order or reading number order. This has no effect when -contigs is used. An order of 1 specifies that the output will list each contig in turn together with the readings within that contig listed in positional order. An order of 0 lists all contig records first followed by all readings in contig and reading number order. The default is 1.