CSC

join_contig

join_contig
 -io            io_handle:integer
 -contig1       identifier:string
?-reading1      identifier:string()?
?-pos1          position:integer(1)?
 -contig2       identifier:string
?-reading2      identifier:string()?
?-pos2          position:integer(1)?

This command brings up a join editor display. The display consists of two contig editors, one above the other. The function returns no value but will generate a Tcl error if an error occurs.

-io io_handle

The database IO handle returned from a previous open_db call.

-contig1 identifier

-contig2 identifier

These specify the contigs to join.

-reading1 identifier

-reading2 identifier

-pos1 position

-pos2 position

By default the editors start with the display and cursor at the left end of the consensus. Use these options to specify a different reading and position. The position is relative to the start of the specified reading. To start the editors at specific positions in the consensus sequence use only -posn.