CSC

find_read_pairs

find_read_pairs
 -io            io_handle:integer
 -contigs       identifiers:strings

This command searches for templates containing both forward and reverse readings where the forward and reverse readings are in differing contigs. This information is plotted on the Contig Selector. The command will not work if the Contig Selector is not displayed. The function returns no value but will generate a Tcl error if an error occurs.

-io io_handle

The database IO handle returned from a previous open_db call.

-contigs identifiers

This specifies the list of contigs to use. Only the contig identifier is currently used, although the syntax specifying start and end ranges is valid.