CSC

extract_readings

extract_readings
 -io            io_handle:integer
 -readings      identifiers:strings
?-directory     directory:string(extracts)?
?-quality       add_quality:integer(1)?

This command copies the edited sequences from the database to Experiment Files on disk. The database is not altered. The function returns no value but will generate a Tcl error if an error occurs.

-io io_handle

The database IO handle returned from a previous open_db call.

-readings identifiers

Specifies the list of readings to extract.

-directory directory

The files created are all placed in a subdirectory (created by this command). This option specifies the directory to be used. The default is `extracts'.

-quality add_quality

This controls whether quality, original positions, and pre-assembly format data is to be included in the file. A non-zero value will output the extra data. The default is 1.