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Programming with Gap4 - Variable Index first previous next last contents

Variable and Type Index

This index contains lists of C and Tcl variables and types. Entry items listed with a (T) suffix are Tcl variables. Entry items listed with a (C) suffix are C variables. All types are C. - _ A C D E F G I L M N O P Q R S T U V

-

  • -avg_len
  • -cnum
  • -contig
  • -contigs
  • -io
  • -lightcolour: editor widget
  • -max_dashes
  • -max_height: editor widget
  • -max_nmismatch
  • -max_pads
  • -max_pmismatch
  • -min_match
  • -min_overlap
  • -output_mode
  • -qual_fg: editor widget
  • -qualcolour: editor widget
  • -reading
  • -readings
  • -rnum
  • -tag_types
  • -win_size

    • _

  • _defs

    • a

  • actual_db_size, GDatabase. (C)
  • annotation, GAnnotations. (C)
  • annotations, GapIO. (C)
  • annotations, GContigs. (C)
  • annotations, GDatabase. (C)
  • annotations, GReadings. (C)

    • c

  • calc_consensus(C)
  • calc_quality(C)
  • chain_left(C)
  • chemistry, GReadings. (C)
  • cli_args
  • client, GapIO. (C)
  • clone, GTemplates. (C)
  • clones, GapIO. (C)
  • clones, GDatabase. (C)
  • command, cli_args field
  • complement_contig_tags(C)
  • confidence, GReadings. (C)
  • contig_list_t(C)
  • contig_order, GapIO. (C)
  • contig_order, GDatabase. (C)
  • contig_reg, GapIO. (C)
  • contig_reg_t
  • contigs, GapIO. (C)
  • contigs, GDatabase. (C)
  • create_tag_for_gel(C)
  • ctagget(C)

    • d

  • data_class, GDatabase. (C)
  • db, GapIO. (C)
  • db_name, GapIO. (C)
  • def, cli_args field

    • e

  • end, GReadings. (C)

    • f

  • free_annotations, GDatabase. (C)
  • freerecs, GapIO. (C)
  • freerecs, GDatabase. (C)
  • freerecs_changed, GapIO. (C)

    • g

  • gap_auto_flush(T)
  • GAP_CHEM_DOUBLE(C)
  • GAP_DB_VERSION(C)
  • gap_defs, OSP
  • GAP_DNA(C)
  • GAP_PRIMER_CUSTFOR(C)
  • GAP_PRIMER_CUSTREV(C)
  • GAP_PRIMER_FORWARD(C)
  • GAP_PRIMER_REVERSE(C)
  • GAP_PRIMER_UNKNOWN(C)
  • GAP_PROTEIN(C)
  • GAP_SENSE_ORIGINAL(C)
  • GAP_SENSE_REVERSE(C)
  • GAP_STRAND_FORWARD(C)
  • GAP_STRAND_REVERSE(C)
  • GAPDB_EXT_INC
  • GAPDB_EXT_LIBS
  • GAPDB_EXT_OBJS
  • GapIO(C)
  • GDatabase(C)
  • get_clone_name(C)
  • get_contig_name(C)
  • get_read_name(C)
  • get_template_name(C)
  • get_vector_name(C)

    • i

  • identifier
  • insert_len_max, GTemplates. (C)
  • insert_len_min, GTemplates. (C)
  • insert_NEW_tag(C)
  • interp->result(C)
  • io_complement_seq(C)
  • io_delete_seq(C)
  • io_insert_seq(C)
  • io_replace_seq(C)

    • l

  • LD_LIBRARY_PATH
  • left, GContigs. (C)
  • left, GReadings. (C)
  • length, GAnnotations. (C)
  • length, GapIO. (C)
  • length, GContigs. (C)
  • length, GReadings. (C)
  • level, GVectors. (C)
  • lightColour: editor widget
  • lnbr, GapIO. (C)

    • m

  • max_gel_len, GDatabase. (C)
  • maxHeight: editor widget
  • maximum_db_size, GDatabase. (C)
  • merge_contig_tags(C)

    • n

  • name, GClones. (C)
  • name, GReadings. (C)
  • name, GTemplates. (C)
  • name, GVectors. (C)
  • Nannotations, GDatabase. (C)
  • Nclones, GDatabase. (C)
  • Ncontigs, GDatabase. (C)
  • next, GAnnotations. (C)
  • Nfreerecs, GDatabase. (C)
  • Nreadings, GDatabase. (C)
  • Ntemplates, GDatabase. (C)
  • num_contigs, GDatabase. (C)
  • num_readings, GDatabase. (C)
  • Nvectors, GDatabase. (C)
  • Nviews, GapIO. (C)

    • o

  • offset, cli_args field
  • orig_positions, GReadings. (C)
  • osp_defs

    • p

  • pad_consensus(C)
  • position, GAnnotations. (C)
  • position, GReadings. (C)
  • primer, GReadings. (C)

    • q

  • qualColour: editor widget
  • qualForeground: editor widget

    • r

  • read_names, GapIO. (C)
  • read_only(T)
  • reading, GapIO. (C)
  • readings, GapIO. (C)
  • readings, GDatabase. (C)
  • REG_ANNO
  • REG_BUFFER_END
  • REG_BUFFER_START
  • REG_COMPLEMENT
  • REG_CURSOR_NOTIFY
  • reg_data
  • REG_DELETE
  • REG_DEREGISTER
  • REG_GENERIC
  • REG_GET_OPS
  • REG_HIGHLIGHT_READ
  • REG_INVOKE_OP
  • REG_JOIN_TO
  • REG_LENGTH
  • REG_NUMBER_CHANGE
  • REG_ORDER
  • REG_PARAMS
  • REG_QUERY_NAME
  • REG_QUIT
  • REG_REGISTER
  • REG_SET_LOCK
  • REG_TYPE_CHECKASS
  • REG_TYPE_CONTIGSEL
  • REG_TYPE_EDITOR
  • REG_TYPE_FIJ
  • REG_TYPE_OLIGO
  • REG_TYPE_QUALITY
  • REG_TYPE_READPAIR
  • REG_TYPE_REPEAT
  • REG_TYPE_RESTRICTION
  • REG_TYPE_STOPCODON
  • REG_TYPE_TEMPLATE
  • REG_TYPE_UNKNOWN
  • relpos, GapIO. (C)
  • remove_contig_tags(C)
  • right, GContigs. (C)
  • right, GReadings. (C)
  • rmanno(C)
  • rmanno_list(C)
  • rnbr, GapIO. (C)
  • rnumtocnum(C)

    • s

  • sense, GReadings. (C)
  • sequence, GReadings. (C)
  • sequence_length, GReadings. (C)
  • server, GapIO. (C)
  • shift_contig_tags(C)
  • split_contig_tags(C)
  • start, GReadings. (C)
  • str2type(C)
  • strand, GAnnotations. (C)
  • strand, GReadings. (C)
  • strands, GTemplates. (C)

    • t

  • tag2values(C)
  • tag_shift_for_delete(C)
  • tag_shift_for_insert(C)
  • TASK_CANVAS_CURSOR_DELETE
  • TASK_CANVAS_CURSOR_X
  • TASK_CANVAS_CURSOR_Y
  • TASK_CANVAS_REDRAW
  • TASK_CANVAS_RESIZE
  • TASK_CANVAS_SCROLLX
  • TASK_CANVAS_SCROLLY
  • TASK_CANVAS_WORLD
  • TASK_CANVAS_ZOOM
  • TASK_CANVAS_ZOOMBACK
  • TASK_CS_REDRAW
  • TASK_DISPLAY_RULER
  • TASK_DISPLAY_TICKS
  • TASK_EDITOR_GETCON
  • TASK_RENZ_INFO
  • TASK_TEMPLATE_REDRAW
  • TASK_WINDOW_ADD
  • TASK_WINDOW_DELETE
  • template, GReadings. (C)
  • templates, GapIO. (C)
  • templates, GDatabase. (C)
  • tk_utils_defs
  • TKUTILS_LIBRARY
  • tounlock, GapIO. (C)
  • trace_name, GReadings. (C)
  • trace_type, GReadings. (C)
  • type, cli_args field
  • type, GAnnotations. (C)
  • type2str(C)

    • u

  • updaterecs, GapIO. (C)

    • v

  • value, cli_args field
  • values2tag(C)
  • vctagget(C)
  • vector, GClones. (C)
  • vector, GTemplates. (C)
  • vectors, GapIO. (C)
  • vectors, GDatabase. (C)
  • version, GDatabase. (C)
  • views, GapIO. (C)

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    This page is maintained by staden-package. Last generated on 25 April 2003.
    URL: http://www.mrc-lmb.cam.ac.uk/pubseq/manual/scripting_218.html