Tehdyt toimenpiteet
The Staden Package Mini-Manual
James Bonfield, Kathryn Beal, Mark Jordan, Yaping Cheng and Rodger Staden
- Preface
- Sequence Assembly and Finishing Using Gap4
- Introduction
- Summary of the Files used and the Preprocessing Steps
- Summary of Gap4's Functions
- Introduction to the gap4 User Interface
- Introduction to the Contig Selector
- Introduction to the Contig Comparator
- Introduction to the Template Display
- Introduction to the Consistency Display
- Introduction to the Restriction Enzyme Map
- Introduction to the Stop Codon Map
- Introduction to the Contig Editor
- Introduction to the Contig Joining Editor
- Searching for point mutations using pregap4 and gap4
- Introduction to mutation detection
- Mutation Detection Programs
- Mutation Detection Reference Data
- Reference Sequences
- Reference Traces
- Using The Template Display With Mutation Data
- Configuring The Gap4 Editor For Mutation Data
- Using The Gap4 Editor With Mutation Data
- Processing Batches Of Mutation Data Trace Files
- Processing Batches Of Mutation Data Trace Files Using Pregap4
- Configuration Of Pregap4 For Mutation Data
- Discussion Of Mutation Data Processing Methods
- Introduction to mutation detection
- Preparing Readings for Assembly Using Pregap4
- Introduction
- Viewing Traces Using Trev
- Analysing Sequences Using Spin
- Introduction
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URL: http://www.mrc-lmb.cam.ac.uk/pubseq/manual/mini_unix_9.html