CSC

	Tehdyt toimenpiteet UTILS DATABASE CREATION   Database installation Program name Description aaindexextract Extract amino acid property data from AAINDEX cutgextract Extract codon usage tables from CUTG database jaspextract Extract data from JASPAR printsextract Extract data from PRINTS database for use by pscan prosextract Processes the PROSITE motif database for use by patmatmotifs rebaseextract Process the REBASE database for use by restriction enzyme applications tfextract Process TRANSFAC transcription factor database for use by tfscan cathparse Generates DCF file from raw CATH files domainnr Removes redundant domains from a DCF file domainseqs Adds sequence records to a DCF file domainsse Add secondary structure records to a DCF file scopparse Generate DCF file from raw SCOP files ssematch Search a DCF file for secondary structure matches allversusall Sequence similarity data from all-versus-all comparison seqnr Removes redundancy from DHF files domainer Generates domain CCF files from protein CCF files hetparse Converts heterogen group dictionary to EMBL-like format pdbparse Parses PDB files and writes protein CCF files pdbplus Add accessibility and secondary structure to a CCF file pdbtosp Convert swissprot:PDB codes file to EMBL-like format sites Generate residue-ligand CON files from CCF files