CSC

	Tehdyt toimenpiteet PROTEIN DOMAINS   Protein domain analysis Program name Description helixturnhelix Identify nucleic acid-binding motifs in protein sequences pepcoil Predicts coiled coil regions in protein sequences cathparse Generates DCF file from raw CATH files domainnr Removes redundant domains from a DCF file domainseqs Adds sequence records to a DCF file domainsse Add secondary structure records to a DCF file scopparse Generate DCF file from raw SCOP files ssematch Search a DCF file for secondary structure matches domainalign Generate alignments (DAF file) for nodes in a DCF file domainrep Reorder DCF file to identify representative structures seqalign Extend alignments (DAF file) with sequences (DHF file) seqfraggle Removes fragment sequences from DHF files seqsort Remove ambiguous classified sequences from DHF files seqwords Generates DHF files from keyword search of UniProt libgen Generate discriminating elements from alignments matgen3d Generate a 3D-1D scoring matrix from CCF files rocon Generates a hits file from comparing two DHF files rocplot Performs ROC analysis on hits files