CSC

	Tehdyt toimenpiteet HMM   Hidden markov model analysis Program name Description ohmmalign Align sequences with an HMM ohmmbuild Build HMM ohmmcalibrate Calibrate a hidden Markov model ohmmconvert Convert between HMM formats ohmmemit Extract HMM sequences ohmmfetch Extract HMM from a database ohmmindex Index an HMM database ohmmpfam Align single sequence with an HMM ohmmsearch Search sequence database with an HMM ehmmalign Align sequences to an HMM profile ehmmbuild Build a profile HMM from an alignment ehmmcalibrate Calibrate HMM search statistics ehmmconvert Convert between profile HMM file formats ehmmemit Generate sequences from a profile HMM ehmmfetch Retrieve an HMM from an HMM database ehmmindex Create a binary SSI index for an HMM database ehmmpfam Search one or more sequences against an HMM database ehmmsearch Search a sequence database with a profile HMM libgen Generate discriminating elements from alignments