EMBOSS at CSC

Tehdyt toimenpiteet

EMBASSY: MIRA: emiraest

emiraest

Wiki

The master copies of EMBOSS documentation are available at http://emboss.open-bio.org/wiki/Appdocs on the EMBOSS Wiki.

Please help by correcting and extending the Wiki pages.

Function

MIRAest fragment assembly program

Description

**************** EDIT HERE ****************

Algorithm

**************** EDIT HERE ****************

Usage

Here is a sample session with emiraest


% emiraest -setparam fasta 
MIRAest fragment assembly program
Basename for index files [mira]: 
Error while trying to load parameter file me_step1.par
Setting defaults for this step.Error while trying to load parameter file me_step2.par
Setting defaults for this step.Error while trying to load parameter file me_step3.par
Setting defaults for this step.
This is miraEST V2.8.3 (production version) for EST SNP analysis in strains.

Please cite: Chevreux, B., Pfisterer, T., Drescher, B., Driesel, A. J.,
Mueller, W. E., Wetter, T. and Suhai, S. (2004),
Using the miraEST Assembler for Reliable and Automated mRNA Transcript
Assembly and SNP Detection in Sequenced ESTs. Genome Research, 14(6).

Mail questions, bug reports, ideas or suggestions to:
	bach@chevreux.org
Compiled in boundtracking mode.
Compiled in bugtracking mode.


-SB:sbuip is 3, but must be no more than 1. Setting to 1


Parsing parameters: -fasta

Using quickmode switch fasta : -GE:lj=fasta



Parameters parsed without error, perfect.
Loading parameters from file: me_step1.par

-SB:sbuip is 3, but must be no more than 1. Setting to 1
Starting step 1: assembling all reads of all strains.
Setting some standard parameters.
Used parameter settings:
  General (-GE):
	Project name (pro)                      : step1
	Load job (lj)                           : FASTA file (fasta)
	Filecheck only (fo)                     : No
	External quality (eq)                   : from SCF (scf)
	    Ext. qual. override (eqo)           : No
	    Discard reads on e.q. error (droeqe): No
	Read naming scheme (rns)                : Sanger Institute (sanger)
	Merge with XML trace info (mxti)        : No
	Use template information (uti)          : Yes

	EST-assembly start step (ess)           : 1

  Assembly options (-AS):
	Minimum read length (mrl)               : 80
	Number of passes (nop)                  : 1
	    Skim each pass (sep)                : Yes
	Maximum number of RMB break loops (rbl) : 20
	Spoiler detection (sd)                  : No
	    Last pass only (sdlpo)              : Yes
	Base default quality (bdq)              : Yes

	Use genomic pathfinder (ugpf)           : Yes

	Use emergency search stop (uess)        : Yes
	    ESS partner depth (esspd)           : 500
	Use emergency blacklist (uebl)          : Yes
	Use max. contig build time (umcbt)      : No
	    Build time in seconds (bts)         : 10000

  Strain and backbone options (-SB):
	Load straindata (lsd)                   : Yes
	Load backbone (lb)                      : No
	    Start backbone usage in pass (sbuip): 1
	    Backbone strain name (bsn)          : (none)
	    Backbone file type (bft)            : FASTA file (fasta)
	    Backbone rail length (brl)          : 2500
	    Backbone base quality (bbq)         : 0
	    Also build new contigs (abnc)       : Yes

  Dataprocessing options (-DP):
	Use read extensions (ure)               : No
	    Read extension window length (rewl) : 30
	    Read extension w. maxerrors (rewme) : 2
	    First extension in pass (feip)      : 0
	    Last extension in pass (leip)       : 0
	Tag poly A/T at ends (tpae)             : Yes
	    Polybase window length (pbwl)       : 7
	    Polybase window maxerrors (pbwme)   : 2
	    Polyb. window grace distance (pbwgc): 9

  Clipping options (-CL):
	Possible vector leftover clip (pvc) : Yes
	    maximum len allowed (pvcmla)    : 12
	Quality clip (qc)                   : Yes
	    Minimum quality (qcmq)          : 20
	    Window length (qcwl)            : 30
	Masked bases clip (mbc)             : Yes
	    Gap size (mbcgs)                : 25
	    Max front gap (mbcmfg)          : 40
	    Max end gap (mbcmeg)            : 80
	Ensure minimum left clip (emlc)     : Yes
	    Minimum left clip req. (mlcr)   : 25
	    Set minimum left clip to (smlc) : 30

  Parameters for SKIM algorithm (-SK):
	Bases per hash (bph)             : 16
	Hash save stepping (hss)         : 4
	Percent required (pr)            : 25
	Maximum hashes in memory (mhim)  : 15000000
	Max hits per read (mhpr)         : 200

  Align parameters for Smith-Waterman align (-AL):
	Bandwidth in percent (bip)         : 15
	Bandwidth max (bmax)               : 100
	Bandwidth min (bmin)               : 25
	Minimum score (ms)                 : 15
	Minimum overlap (mo)               : 15
	Minimum relative score in % (mrs)  : 65
	Extra gap penalty (egp)            : Yes
	    extra gap penalty level (egpl) : low
	    Max. egp in percent (megpp)    : 100

  Contig parameters (-CO):
	Name prefix (np)                                         : step1
	Error analysis (an)                                      : SCF signal (signal)
	Reject on drop in relative alignment score (%)           : 15
	Max. error rate in dangerous zones in % (dmer)           : 1
	Mark repeats (mr)                                        : Yes
	    Assume SNP instead of repeats (asir)                 : No
	    Minimum reads per group needed for tagging (mrpg)    : 2
	    Minimum neighbour quality needed for tagging (mnq)   : 20
	    Minimum Group Quality needed for RMB Tagging (mgqrt) : 30
	    End-read Marking Exclusion Area in bases (emea)      : 15
	    Also mark gap bases (amgb)                           : Yes
	        Also mark gap bases - even multicolumn (amgbemc) : Yes
	        Also mark gap bases - need both strands (amgbnbs): Yes
	Default template insert size minimum (dismin)            : 500
	Default template insert size maximum (dismax)            : 5000

  Edit options (-ED):
	Automatic contig editing (ace)        : No
	Strict editing mode (sem)             : No
	Confirmation threshold in percent (ct): 50

  Directories (-DI):
	When loading EXP   files: 
	When loading SCF   files: 
	For writing log files   : step1_log
	For writing gap4 DA res.: step1_out

  Input files (-FI):
	When loading EXP fofn                    : step1_in.fofn
	When loading project from PHD            : step1_in.phd.1
	When loading project from CAF            : step1_in.caf
	When loading sequences from FASTA        : step1_in.fasta
	When loading qualities from FASTA quality: step1_in.fasta.qual
	When loading straindata                  : step1_straindata_in.txt
	When loading XML trace info files        : step1_traceinfo_in.xml

	When loading backbone from CAF           : step1_backbone_in.caf
	When loading backbone from GenBank       : step1_backbone_in.gbf
	When loading backbone from FASTA         : step1_backbone_in.fasta

  Output files (-OUTPUT/-OUT):
    Result files:
	Saved as CAF                       (orc): Yes
	Saved as FASTA                     (orf): Yes
	Saved as GAP4 (directed assembly)  (org): Yes
	Saved as phrap ACE                 (ora): No
	Saved as HTML                      (orh): No
	Saved as Transposed Contig Summary (ors): No
	Saved as simple text format        (ort): No

    Temporary result files:
	Saved as CAF                      (otc): No
	Saved as FASTA                    (otf): No
	Saved as GAP4 (directed assembly) (otg): No
	Saved as phrap ACE                (ota): No
	Saved as HTML                     (oth): No
	Saved as Transposed Contig Summary(ots): No
	Saved as simple text format       (ott): No

    Extended temporary result files:
	Saved as CAF                      (oetc): No
	Saved as FASTA                    (oetf): No
	Saved as GAP4 (directed assembly) (oetg): No
	Saved as phrap ACE                (oeta): No
	Saved as HTML                     (oeth): No
	Save also singlets               (oetas): No

    Alignment output customisation:
	TEXT characters per line          (tcpl): 60
	HTML characters per line          (hcpl): 60
	TEXT characters per line         (tegfc): ' '
	HTML characters per line         (hegfc): ' '

    File / directory names:
	CAF             : step1_out.caf
	FASTA           : step1_out.unpadded.fasta
	FASTA quality   : step1_out.unpadded.fasta.qual
	FASTA (padded)  : step1_out.padded.fasta
	FASTA qual.(pad): step1_out.padded.fasta.qual
	GAP4 (directory): step1_out.gap4da
	ACE             : step1_out.ace
	HTML            : step1_out.html
	Simple text     : step1_out.txt
	TCS overview    : step1_out.tcs

Creating directory step1_log ... done.
Creating directory step1_results ... done.
Creating directory step1_info ... done.
Localtime: Thu Jul 15 12:00:00 2010

Loading data normal (probably Sanger type) from FASTA file step1_in.fasta
Counting sequences in FASTA file:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
Loading sequence data from FASTA file:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
Loading quality data from FASTA quality file:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 

Done.
There haven been 2396 reads given, 2396 of which have quality accounted for.
Localtime: Thu Jul 15 12:00:00 2010

Checking SCF files (loading qualities only if needed):
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
Done.
0 SCF files loaded ok.
2396 SCF files were not found (see 'step1_log/step1_info_scfreadfail.0' for a list of names).


Starting clips: quality, masked characters done.
Localtime: Thu Jul 15 12:00:00 2010

Loading straindata.
Building hash table ... done.

Read 0 straindata lines.
Warning: gnlti136477494 has no strain. Using default strain.
Warning: gnlti136477495 has no strain. Using default strain.
Warning: gnlti136477496 has no strain. Using default strain.
Warning: gnlti136477497 has no strain. Using default strain.
Warning: gnlti136477498 has no strain. Using default strain.
Warning: gnlti136477499 has no strain. Using default strain.
Warning: gnlti136477500 has no strain. Using default strain.
Warning: gnlti136477501 has no strain. Using default strain.
Warning: gnlti136477502 has no strain. Using default strain.
Warning: gnlti136477503 has no strain. Using default strain.
Warning: gnlti136477504 has no strain. Using default strain.
Warning: gnlti136477505 has no strain. Using default strain.
Warning: gnlti136477506 has no strain. Using default strain.
Warning: gnlti136477507 has no strain. Using default strain.
Warning: gnlti136477508 has no strain. Using default strain.
Warning: gnlti136477509 has no strain. Using default strain.
Warning: gnlti136477510 has no strain. Using default strain.
Warning: gnlti136477511 has no strain. Using default strain.
Warning: gnlti136477512 has no strain. Using default strain.
Warning: gnlti136477513 has no strain. Using default strain.
Warning: gnlti136477514 has no strain. Using default strain.
Warning: gnlti136477515 has no strain. Using default strain.
Warning: gnlti136477516 has no strain. Using default strain.
Warning: gnlti136477517 has no strain. Using default strain.
Warning: gnlti136477518 has no strain. Using default strain.
Warning: gnlti136477519 has no strain. Using default strain.
Warning: gnlti136477520 has no strain. Using default strain.
Warning: gnlti136477521 has no strain. Using default strain.
Warning: gnlti136477522 has no strain. Using default strain.
Warning: gnlti136477523 has no strain. Using default strain.
Warning: gnlti136477524 has no strain. Using default strain.
Warning: gnlti136477525 has no strain. Using default strain.
Warning: gnlti136477526 has no strain. Using default strain.
Warning: gnlti136477527 has no strain. Using default strain.
Warning: gnlti136477528 has no strain. Using default strain.
Warning: gnlti136477529 has no strain. Using default strain.
Warning: gnlti136477530 has no strain. Using default strain.
Warning: gnlti136477531 has no strain. Using default strain.
Warning: gnlti136477532 has no strain. Using default strain.
Warning: gnlti136477533 has no strain. Using default strain.
Warning: gnlti136477534 has no strain. Using default strain.
Warning: gnlti136477535 has no strain. Using default strain.
Warning: gnlti136477536 has no strain. Using default strain.
Warning: gnlti136477537 has no strain. Using default strain.
Warning: gnlti136477538 has no strain. Using default strain.
Warning: gnlti136477539 has no strain. Using default strain.
Warning: gnlti136477540 has no strain. Using default strain.
Warning: gnlti136477541 has no strain. Using default strain.
Warning: gnlti136477542 has no strain. Using default strain.
Warning: gnlti136477543 has no strain. Using default strain.
Warning: gnlti136477544 has no strain. Using default strain.
Warning: gnlti136477545 has no strain. Using default strain.
Warning: gnlti136477546 has no strain. Using default strain.
Warning: gnlti136477547 has no strain. Using default strain.
Warning: gnlti136477548 has no strain. Using default strain.
Warning: gnlti136477549 has no strain. Using default strain.
Warning: gnlti136477550 has no strain. Using default strain.
Warning: gnlti136477551 has no strain. Using default strain.
Warning: gnlti136477552 has no strain. Using default strain.
Warning: gnlti136477553 has no strain. Using default strain.
Warning: gnlti136477554 has no strain. Using default strain.
Warning: gnlti136477555 has no strain. Using default strain.
Warning: gnlti136477556 has no strain. Using default strain.
Warning: gnlti136477557 has no strain. Using default strain.
Warning: gnlti136477558 has no strain. Using default strain.
Warning: gnlti136477559 has no strain. Using default strain.
Warning: gnlti136477560 has no strain. Using default strain.
Warning: gnlti136477561 has no strain. Using default strain.
Warning: gnlti136477562 has no strain. Using default strain.
Warning: gnlti136477563 has no strain. Using default strain.
Warning: gnlti136477564 has no strain. Using default strain.
Warning: gnlti136477565 has no strain. Using default strain.
Warning: gnlti136477566 has no strain. Using default strain.
Warning: gnlti136477567 has no strain. Using default strain.
Warning: gnlti136477568 has no strain. Using default strain.
Warning: gnlti136477569 has no strain. Using default strain.
Warning: gnlti136477570 has no strain. Using default strain.
Warning: gnlti136477571 has no strain. Using default strain.
Warning: gnlti136477572 has no strain. Using default strain.
Warning: gnlti136477573 has no strain. Using default strain.
Warning: gnlti136477574 has no strain. Using default strain.
Warning: gnlti136477575 has no strain. Using default strain.
Warning: gnlti136477576 has no strain. Using default strain.
Warning: gnlti136477577 has no strain. Using default strain.
Warning: gnlti136477578 has no strain. Using default strain.
Warning: gnlti136477579 has no strain. Using default strain.
Warning: gnlti136477580 has no strain. Using default strain.
Warning: gnlti136477581 has no strain. Using default strain.
Warning: gnlti136477582 has no strain. Using default strain.
Warning: gnlti136477583 has no strain. Using default strain.
Warning: gnlti136477584 has no strain. Using default strain.
Warning: gnlti136477585 has no strain. Using default strain.
Warning: gnlti136477586 has no strain. Using default strain.
Warning: gnlti136477587 has no strain. Using default strain.
Warning: gnlti136477588 has no strain. Using default strain.
Warning: gnlti136477589 has no strain. Using default strain.
Warning: gnlti136477590 has no strain. Using default strain.
Warning: gnlti136477591 has no strain. Using default strain.
Warning: gnlti136477592 has no strain. Using default strain.
Warning: gnlti136477593 has no strain. Using default strain.
Warning: gnlti136477594 has no strain. Using default strain.
Warning: gnlti136477595 has no strain. Using default strain.
Warning: gnlti136477596 has no strain. Using default strain.
Warning: gnlti136477597 has no strain. Using default strain.
Warning: gnlti136477598 has no strain. Using default strain.
Warning: gnlti136477599 has no strain. Using default strain.
Warning: gnlti136477600 has no strain. Using default strain.
Warning: gnlti136477601 has no strain. Using default strain.
Warning: gnlti136477602 has no strain. Using default strain.
Warning: gnlti136477603 has no strain. Using default strain.
Warning: gnlti136477604 has no strain. Using default strain.
Warning: gnlti136477605 has no strain. Using default strain.
Warning: gnlti136477606 has no strain. Using default strain.
Warning: gnlti136477607 has no strain. Using default strain.
Warning: gnlti136477608 has no strain. Using default strain.
Warning: gnlti136477609 has no strain. Using default strain.
Warning: gnlti136477610 has no strain. Using default strain.
Warning: gnlti136477611 has no strain. Using default strain.
Warning: gnlti136477612 has no strain. Using default strain.
Warning: gnlti136477613 has no strain. Using default strain.
Warning: gnlti136477614 has no strain. Using default strain.
Warning: gnlti136477615 has no strain. Using default strain.
Warning: gnlti136477616 has no strain. Using default strain.
Warning: gnlti136477617 has no strain. Using default strain.
Warning: gnlti136477618 has no strain. Using default strain.
Warning: gnlti136477619 has no strain. Using default strain.
Warning: gnlti136477620 has no strain. Using default strain.
Warning: gnlti136477621 has no strain. Using default strain.
Warning: gnlti136477622 has no strain. Using default strain.
Warning: gnlti136477623 has no strain. Using default strain.
Warning: gnlti136477624 has no strain. Using default strain.
Warning: gnlti136477625 has no strain. Using default strain.
Warning: gnlti136477626 has no strain. Using default strain.
Warning: gnlti136477627 has no strain. Using default strain.
Warning: gnlti136477628 has no strain. Using default strain.
Warning: gnlti136477629 has no strain. Using default strain.
Warning: gnlti136477630 has no strain. Using default strain.
Warning: gnlti136477631 has no strain. Using default strain.
Warning: gnlti136477632 has no strain. Using default strain.
Warning: gnlti136477633 has no strain. Using default strain.
Warning: gnlti136477634 has no strain. Using default strain.
Warning: gnlti136477635 has no strain. Using default strain.
Warning: gnlti136477636 has no strain. Using default strain.
Warning: gnlti136477637 has no strain. Using default strain.
Warning: gnlti136477638 has no strain. Using default strain.
Warning: gnlti136477639 has no strain. Using default strain.
Warning: gnlti136477640 has no strain. Using default strain.
Warning: gnlti136477641 has no strain. Using default strain.
Warning: gnlti136477642 has no strain. Using default strain.
Warning: gnlti136477643 has no strain. Using default strain.
Warning: gnlti136477644 has no strain. Using default strain.
Warning: gnlti136477645 has no strain. Using default strain.
Warning: gnlti136477646 has no strain. Using default strain.
Warning: gnlti136477647 has no strain. Using default strain.
Warning: gnlti136477648 has no strain. Using default strain.
Warning: gnlti136477649 has no strain. Using default strain.
Warning: gnlti136477650 has no strain. Using default strain.
Warning: gnlti136477651 has no strain. Using default strain.
Warning: gnlti136477652 has no strain. Using default strain.
Warning: gnlti136477653 has no strain. Using default strain.
Warning: gnlti136477654 has no strain. Using default strain.
Warning: gnlti136477655 has no strain. Using default strain.
Warning: gnlti136477656 has no strain. Using default strain.
Warning: gnlti136477657 has no strain. Using default strain.
Warning: gnlti136477658 has no strain. Using default strain.
Warning: gnlti136477659 has no strain. Using default strain.
Warning: gnlti136477660 has no strain. Using default strain.
Warning: gnlti136477661 has no strain. Using default strain.
Warning: gnlti136477662 has no strain. Using default strain.
Warning: gnlti136477663 has no strain. Using default strain.
Warning: gnlti136477664 has no strain. Using default strain.
Warning: gnlti136477665 has no strain. Using default strain.
Warning: gnlti136477666 has no strain. Using default strain.
Warning: gnlti136477667 has no strain. Using default strain.
Warning: gnlti136477668 has no strain. Using default strain.
Warning: gnlti136477669 has no strain. Using default strain.
Warning: gnlti136477670 has no strain. Using default strain.
Warning: gnlti136477671 has no strain. Using default strain.
Warning: gnlti136477672 has no strain. Using default strain.
Warning: gnlti136477673 has no strain. Using default strain.
Warning: gnlti136477674 has no strain. Using default strain.
Warning: gnlti136477675 has no strain. Using default strain.
Warning: gnlti136477676 has no strain. Using default strain.
Warning: gnlti136477677 has no strain. Using default strain.
Warning: gnlti136477678 has no strain. Using default strain.
Warning: gnlti136477679 has no strain. Using default strain.
Warning: gnlti136477680 has no strain. Using default strain.
Warning: gnlti136477681 has no strain. Using default strain.
Warning: gnlti136477682 has no strain. Using default strain.
Warning: gnlti136477683 has no strain. Using default strain.
Warning: gnlti136477684 has no strain. Using default strain.
Warning: gnlti136477685 has no strain. Using default strain.
Warning: gnlti136477686 has no strain. Using default strain.
Warning: gnlti136477687 has no strain. Using default strain.
Warning: gnlti136477688 has no strain. Using default strain.
Warning: gnlti136477689 has no strain. Using default strain.
Warning: gnlti136477690 has no strain. Using default strain.
Warning: gnlti136477691 has no strain. Using default strain.
Warning: gnlti136477692 has no strain. Using default strain.
Warning: gnlti136477693 has no strain. Using default strain.
Warning: gnlti136477694 has no strain. Using default strain.
Warning: gnlti136477695 has no strain. Using default strain.
Warning: gnlti136477696 has no strain. Using default strain.
Warning: gnlti136477697 has no strain. Using default strain.
Warning: gnlti136477698 has no strain. Using default strain.
Warning: gnlti136477699 has no strain. Using default strain.
Warning: gnlti136477700 has no strain. Using default strain.
Warning: gnlti136477701 has no strain. Using default strain.
Warning: gnlti136477702 has no strain. Using default strain.
Warning: gnlti136477703 has no strain. Using default strain.
Warning: gnlti136477704 has no strain. Using default strain.
Warning: gnlti136477705 has no strain. Using default strain.
Warning: gnlti136477706 has no strain. Using default strain.
Warning: gnlti136477707 has no strain. Using default strain.
Warning: gnlti136477708 has no strain. Using default strain.
Warning: gnlti136477709 has no strain. Using default strain.
Warning: gnlti136477710 has no strain. Using default strain.
Warning: gnlti136477711 has no strain. Using default strain.
Warning: gnlti136477712 has no strain. Using default strain.
Warning: gnlti136477713 has no strain. Using default strain.
Warning: gnlti136477714 has no strain. Using default strain.
Warning: gnlti136477715 has no strain. Using default strain.
Warning: gnlti136477716 has no strain. Using default strain.
Warning: gnlti136477717 has no strain. Using default strain.
Warning: gnlti136477718 has no strain. Using default strain.
Warning: gnlti136477719 has no strain. Using default strain.
Warning: gnlti136477720 has no strain. Using default strain.
Warning: gnlti136477721 has no strain. Using default strain.
Warning: gnlti136477722 has no strain. Using default strain.
Warning: gnlti136477723 has no strain. Using default strain.
Warning: gnlti136477724 has no strain. Using default strain.
Warning: gnlti136477725 has no strain. Using default strain.
Warning: gnlti136477726 has no strain. Using default strain.
Warning: gnlti136477727 has no strain. Using default strain.
Warning: gnlti136477728 has no strain. Using default strain.
Warning: gnlti136477729 has no strain. Using default strain.
Warning: gnlti136477730 has no strain. Using default strain.
Warning: gnlti136477731 has no strain. Using default strain.
Warning: gnlti136477732 has no strain. Using default strain.
Warning: gnlti136477733 has no strain. Using default strain.
Warning: gnlti136477734 has no strain. Using default strain.
Warning: gnlti136477735 has no strain. Using default strain.
Warning: gnlti136477736 has no strain. Using default strain.
Warning: gnlti136477737 has no strain. Using default strain.
Warning: gnlti136477738 has no strain. Using default strain.
Warning: gnlti136477739 has no strain. Using default strain.
Warning: gnlti136477740 has no strain. Using default strain.
Warning: gnlti136477741 has no strain. Using default strain.
Warning: gnlti136477742 has no strain. Using default strain.
Warning: gnlti136477743 has no strain. Using default strain.
Warning: gnlti136477744 has no strain. Using default strain.
Warning: gnlti136477745 has no strain. Using default strain.
Warning: gnlti136477746 has no strain. Using default strain.
Warning: gnlti136477747 has no strain. Using default strain.
Warning: gnlti136477748 has no strain. Using default strain.
Warning: gnlti136477749 has no strain. Using default strain.
Warning: gnlti136477750 has no strain. Using default strain.
Warning: gnlti136477751 has no strain. Using default strain.
Warning: gnlti136477752 has no strain. Using default strain.
Warning: gnlti136477753 has no strain. Using default strain.
Warning: gnlti136477754 has no strain. Using default strain.
Warning: gnlti136477755 has no strain. Using default strain.
Warning: gnlti136477756 has no strain. Using default strain.
Warning: gnlti136477757 has no strain. Using default strain.
Warning: gnlti136477758 has no strain. Using default strain.
Warning: gnlti136477759 has no strain. Using default strain.
Warning: gnlti136477760 has no strain. Using default strain.
Warning: gnlti136477761 has no strain. Using default strain.
Warning: gnlti136477762 has no strain. Using default strain.
Warning: gnlti136477763 has no strain. Using default strain.
Warning: gnlti136477764 has no strain. Using default strain.
Warning: gnlti136477765 has no strain. Using default strain.
Warning: gnlti136477766 has no strain. Using default strain.
Warning: gnlti136477767 has no strain. Using default strain.
Warning: gnlti136477768 has no strain. Using default strain.
Warning: gnlti136477769 has no strain. Using default strain.
Warning: gnlti136477770 has no strain. Using default strain.
Warning: gnlti136477771 has no strain. Using default strain.
Warning: gnlti136477772 has no strain. Using default strain.
Warning: gnlti136477773 has no strain. Using default strain.
Warning: gnlti136477774 has no strain. Using default strain.
Warning: gnlti136477775 has no strain. Using default strain.
Warning: gnlti136477776 has no strain. Using default strain.
Warning: gnlti136477777 has no strain. Using default strain.
Warning: gnlti136477778 has no strain. Using default strain.
Warning: gnlti136477779 has no strain. Using default strain.
Warning: gnlti136477780 has no strain. Using default strain.
Warning: gnlti136477781 has no strain. Using default strain.
Warning: gnlti136477782 has no strain. Using default strain.
Warning: gnlti136477783 has no strain. Using default strain.
Warning: gnlti136477784 has no strain. Using default strain.
Warning: gnlti136477785 has no strain. Using default strain.
Warning: gnlti136477786 has no strain. Using default strain.
Warning: gnlti136477787 has no strain. Using default strain.
Warning: gnlti136477788 has no strain. Using default strain.
Warning: gnlti136477789 has no strain. Using default strain.
Warning: gnlti136477790 has no strain. Using default strain.
Warning: gnlti136477791 has no strain. Using default strain.
Warning: gnlti136477792 has no strain. Using default strain.
Warning: gnlti136477793 has no strain. Using default strain.
Warning: gnlti136477794 has no strain. Using default strain.
Warning: gnlti136477795 has no strain. Using default strain.
Warning: gnlti136477796 has no strain. Using default strain.
Warning: gnlti136477797 has no strain. Using default strain.
Warning: gnlti136477798 has no strain. Using default strain.
Warning: gnlti136477799 has no strain. Using default strain.
Warning: gnlti136477800 has no strain. Using default strain.
Warning: gnlti136477801 has no strain. Using default strain.
Warning: gnlti136477802 has no strain. Using default strain.
Warning: gnlti136477803 has no strain. Using default strain.
Warning: gnlti136477804 has no strain. Using default strain.
Warning: gnlti136477805 has no strain. Using default strain.
Warning: gnlti136477806 has no strain. Using default strain.
Warning: gnlti136477807 has no strain. Using default strain.
Warning: gnlti136477808 has no strain. Using default strain.
Warning: gnlti136477809 has no strain. Using default strain.
Warning: gnlti136477810 has no strain. Using default strain.
Warning: gnlti136477811 has no strain. Using default strain.
Warning: gnlti136477812 has no strain. Using default strain.
Warning: gnlti136477813 has no strain. Using default strain.
Warning: gnlti136477814 has no strain. Using default strain.
Warning: gnlti136477815 has no strain. Using default strain.
Warning: gnlti136477816 has no strain. Using default strain.
Warning: gnlti136477817 has no strain. Using default strain.
Warning: gnlti136477818 has no strain. Using default strain.
Warning: gnlti136477819 has no strain. Using default strain.
Warning: gnlti136477820 has no strain. Using default strain.
Warning: gnlti136477821 has no strain. Using default strain.
Warning: gnlti136477822 has no strain. Using default strain.
Warning: gnlti136477823 has no strain. Using default strain.
Warning: gnlti136477824 has no strain. Using default strain.
Warning: gnlti136477825 has no strain. Using default strain.
Warning: gnlti136477826 has no strain. Using default strain.
Warning: gnlti136477827 has no strain. Using default strain.
Warning: gnlti136477828 has no strain. Using default strain.
Warning: gnlti136477829 has no strain. Using default strain.
Warning: gnlti136477830 has no strain. Using default strain.
Warning: gnlti136477831 has no strain. Using default strain.
Warning: gnlti136477832 has no strain. Using default strain.
Warning: gnlti136477833 has no strain. Using default strain.
Warning: gnlti136477834 has no strain. Using default strain.
Warning: gnlti136477835 has no strain. Using default strain.
Warning: gnlti136477836 has no strain. Using default strain.
Warning: gnlti136477837 has no strain. Using default strain.
Warning: gnlti136477838 has no strain. Using default strain.
Warning: gnlti136477839 has no strain. Using default strain.
Warning: gnlti136477840 has no strain. Using default strain.
Warning: gnlti136477841 has no strain. Using default strain.
Warning: gnlti136477842 has no strain. Using default strain.
Warning: gnlti136477843 has no strain. Using default strain.
Warning: gnlti136477844 has no strain. Using default strain.
Warning: gnlti136477845 has no strain. Using default strain.
Warning: gnlti136477846 has no strain. Using default strain.
Warning: gnlti136477847 has no strain. Using default strain.
Warning: gnlti136477848 has no strain. Using default strain.
Warning: gnlti136477849 has no strain. Using default strain.
Warning: gnlti136477850 has no strain. Using default strain.
Warning: gnlti136477851 has no strain. Using default strain.
Warning: gnlti136477852 has no strain. Using default strain.
Warning: gnlti136477853 has no strain. Using default strain.
Warning: gnlti136477854 has no strain. Using default strain.
Warning: gnlti136477855 has no strain. Using default strain.
Warning: gnlti136477856 has no strain. Using default strain.
Warning: gnlti136477857 has no strain. Using default strain.
Warning: gnlti136477858 has no strain. Using default strain.
Warning: gnlti136477859 has no strain. Using default strain.
Warning: gnlti136477860 has no strain. Using default strain.
Warning: gnlti136477861 has no strain. Using default strain.
Warning: gnlti136477862 has no strain. Using default strain.
Warning: gnlti136477863 has no strain. Using default strain.
Warning: gnlti136477864 has no strain. Using default strain.
Warning: gnlti136477865 has no strain. Using default strain.
Warning: gnlti136477866 has no strain. Using default strain.
Warning: gnlti136477867 has no strain. Using default strain.
Warning: gnlti136477868 has no strain. Using default strain.
Warning: gnlti136477869 has no strain. Using default strain.
Warning: gnlti136477870 has no strain. Using default strain.
Warning: gnlti136477871 has no strain. Using default strain.
Warning: gnlti136477872 has no strain. Using default strain.
Warning: gnlti136477873 has no strain. Using default strain.
Warning: gnlti136477874 has no strain. Using default strain.
Warning: gnlti136477875 has no strain. Using default strain.
Warning: gnlti136477876 has no strain. Using default strain.
Warning: gnlti136477877 has no strain. Using default strain.
Warning: gnlti136477878 has no strain. Using default strain.
Warning: gnlti136477879 has no strain. Using default strain.
Warning: gnlti136477880 has no strain. Using default strain.
Warning: gnlti136477881 has no strain. Using default strain.
Warning: gnlti136477882 has no strain. Using default strain.
Warning: gnlti136477883 has no strain. Using default strain.
Warning: gnlti136477884 has no strain. Using default strain.
Warning: gnlti136477885 has no strain. Using default strain.
Warning: gnlti136477886 has no strain. Using default strain.
Warning: gnlti136477887 has no strain. Using default strain.
Warning: gnlti136477888 has no strain. Using default strain.
Warning: gnlti136477889 has no strain. Using default strain.
Warning: gnlti136477890 has no strain. Using default strain.
Warning: gnlti136477891 has no strain. Using default strain.
Warning: gnlti136477892 has no strain. Using default strain.
Warning: gnlti136477893 has no strain. Using default strain.
Warning: gnlti136477894 has no strain. Using default strain.
Warning: gnlti136477895 has no strain. Using default strain.
Warning: gnlti136477896 has no strain. Using default strain.
Warning: gnlti136477897 has no strain. Using default strain.
Warning: gnlti136477898 has no strain. Using default strain.
Warning: gnlti136477899 has no strain. Using default strain.
Warning: gnlti136477900 has no strain. Using default strain.
Warning: gnlti136477901 has no strain. Using default strain.
Warning: gnlti136477902 has no strain. Using default strain.
Warning: gnlti136477903 has no strain. Using default strain.
Warning: gnlti136477904 has no strain. Using default strain.
Warning: gnlti136477905 has no strain. Using default strain.
Warning: gnlti136477906 has no strain. Using default strain.
Warning: gnlti136477907 has no strain. Using default strain.
Warning: gnlti136477908 has no strain. Using default strain.
Warning: gnlti136477909 has no strain. Using default strain.
Warning: gnlti136477910 has no strain. Using default strain.
Warning: gnlti136477911 has no strain. Using default strain.
Warning: gnlti136477912 has no strain. Using default strain.
Warning: gnlti136477913 has no strain. Using default strain.
Warning: gnlti136477914 has no strain. Using default strain.
Warning: gnlti136477915 has no strain. Using default strain.
Warning: gnlti136477916 has no strain. Using default strain.
Warning: gnlti136477917 has no strain. Using default strain.
Warning: gnlti136477918 has no strain. Using default strain.
Warning: gnlti136477919 has no strain. Using default strain.
Warning: gnlti136477920 has no strain. Using default strain.
Warning: gnlti136477921 has no strain. Using default strain.
Warning: gnlti136477922 has no strain. Using default strain.
Warning: gnlti136477923 has no strain. Using default strain.
Warning: gnlti136477924 has no strain. Using default strain.
Warning: gnlti136477925 has no strain. Using default strain.
Warning: gnlti136477926 has no strain. Using default strain.
Warning: gnlti136477927 has no strain. Using default strain.
Warning: gnlti136477928 has no strain. Using default strain.
Warning: gnlti136477929 has no strain. Using default strain.
Warning: gnlti136477930 has no strain. Using default strain.
Warning: gnlti136477931 has no strain. Using default strain.
Warning: gnlti136477932 has no strain. Using default strain.
Warning: gnlti136477933 has no strain. Using default strain.
Warning: gnlti136477934 has no strain. Using default strain.
Warning: gnlti136477935 has no strain. Using default strain.
Warning: gnlti136477936 has no strain. Using default strain.
Warning: gnlti136477937 has no strain. Using default strain.
Warning: gnlti136477938 has no strain. Using default strain.
Warning: gnlti136477939 has no strain. Using default strain.
Warning: gnlti136477940 has no strain. Using default strain.
Warning: gnlti136477941 has no strain. Using default strain.
Warning: gnlti136477942 has no strain. Using default strain.
Warning: gnlti136477943 has no strain. Using default strain.
Warning: gnlti136477944 has no strain. Using default strain.
Warning: gnlti136477945 has no strain. Using default strain.
Warning: gnlti136477946 has no strain. Using default strain.
Warning: gnlti136477947 has no strain. Using default strain.
Warning: gnlti136477948 has no strain. Using default strain.
Warning: gnlti136477949 has no strain. Using default strain.
Warning: gnlti136477950 has no strain. Using default strain.
Warning: gnlti136477951 has no strain. Using default strain.
Warning: gnlti136477952 has no strain. Using default strain.
Warning: gnlti136477953 has no strain. Using default strain.
Warning: gnlti136477954 has no strain. Using default strain.
Warning: gnlti136477955 has no strain. Using default strain.
Warning: gnlti136477956 has no strain. Using default strain.
Warning: gnlti136477957 has no strain. Using default strain.
Warning: gnlti136477958 has no strain. Using default strain.
Warning: gnlti136477959 has no strain. Using default strain.
Warning: gnlti136477960 has no strain. Using default strain.
Warning: gnlti136477961 has no strain. Using default strain.
Warning: gnlti136477962 has no strain. Using default strain.
Warning: gnlti136477963 has no strain. Using default strain.
Warning: gnlti136477964 has no strain. Using default strain.
Warning: gnlti136477965 has no strain. Using default strain.
Warning: gnlti136477966 has no strain. Using default strain.
Warning: gnlti136477967 has no strain. Using default strain.
Warning: gnlti136477968 has no strain. Using default strain.
Warning: gnlti136477969 has no strain. Using default strain.
Warning: gnlti136477970 has no strain. Using default strain.
Warning: gnlti136477971 has no strain. Using default strain.
Warning: gnlti136477972 has no strain. Using default strain.
Warning: gnlti136477973 has no strain. Using default strain.
Warning: gnlti136477974 has no strain. Using default strain.
Warning: gnlti136477975 has no strain. Using default strain.
Warning: gnlti136477976 has no strain. Using default strain.
Warning: gnlti136477977 has no strain. Using default strain.
Warning: gnlti136477978 has no strain. Using default strain.
Warning: gnlti136477979 has no strain. Using default strain.
Warning: gnlti136477980 has no strain. Using default strain.
Warning: gnlti136477981 has no strain. Using default strain.
Warning: gnlti136477982 has no strain. Using default strain.
Warning: gnlti136477983 has no strain. Using default strain.
Warning: gnlti136477984 has no strain. Using default strain.
Warning: gnlti136477985 has no strain. Using default strain.
Warning: gnlti136477986 has no strain. Using default strain.
Warning: gnlti136477987 has no strain. Using default strain.
Warning: gnlti136477988 has no strain. Using default strain.
Warning: gnlti136477989 has no strain. Using default strain.
Warning: gnlti136477990 has no strain. Using default strain.
Warning: gnlti136477991 has no strain. Using default strain.
Warning: gnlti136477992 has no strain. Using default strain.
Warning: gnlti136477993 has no strain. Using default strain.
Warning: gnlti136477994 has no strain. Using default strain.
Warning: gnlti136477995 has no strain. Using default strain.
Warning: gnlti136477996 has no strain. Using default strain.
Warning: gnlti136477997 has no strain. Using default strain.
Warning: gnlti136477998 has no strain. Using default strain.
Warning: gnlti136477999 has no strain. Using default strain.
Warning: gnlti136478000 has no strain. Using default strain.
Warning: gnlti136478001 has no strain. Using default strain.
Warning: gnlti136478002 has no strain. Using default strain.
Warning: gnlti136478003 has no strain. Using default strain.
Warning: gnlti136478004 has no strain. Using default strain.
Warning: gnlti136478005 has no strain. Using default strain.
Warning: gnlti136478006 has no strain. Using default strain.
Warning: gnlti136478007 has no strain. Using default strain.
Warning: gnlti136478008 has no strain. Using default strain.
Warning: gnlti136478009 has no strain. Using default strain.
Warning: gnlti136478010 has no strain. Using default strain.
Warning: gnlti136478011 has no strain. Using default strain.
Warning: gnlti136478012 has no strain. Using default strain.
Warning: gnlti136478013 has no strain. Using default strain.
Warning: gnlti136478014 has no strain. Using default strain.
Warning: gnlti136478015 has no strain. Using default strain.
Warning: gnlti136478016 has no strain. Using default strain.
Warning: gnlti136478017 has no strain. Using default strain.
Warning: gnlti136478018 has no strain. Using default strain.
Warning: gnlti136478019 has no strain. Using default strain.
Warning: gnlti136478020 has no strain. Using default strain.
Warning: gnlti136478021 has no strain. Using default strain.
Warning: gnlti136478022 has no strain. Using default strain.
Warning: gnlti136478023 has no strain. Using default strain.
Warning: gnlti136478024 has no strain. Using default strain.
Warning: gnlti136478025 has no strain. Using default strain.
Warning: gnlti136478026 has no strain. Using default strain.
Warning: gnlti136478027 has no strain. Using default strain.
Warning: gnlti136478028 has no strain. Using default strain.
Warning: gnlti136478029 has no strain. Using default strain.
Warning: gnlti136478030 has no strain. Using default strain.
Warning: gnlti136478031 has no strain. Using default strain.
Warning: gnlti136478032 has no strain. Using default strain.
Warning: gnlti136478033 has no strain. Using default strain.
Warning: gnlti136478034 has no strain. Using default strain.
Warning: gnlti136478035 has no strain. Using default strain.
Warning: gnlti136478036 has no strain. Using default strain.
Warning: gnlti136478037 has no strain. Using default strain.
Warning: gnlti136478038 has no strain. Using default strain.
Warning: gnlti136478039 has no strain. Using default strain.
Warning: gnlti136478040 has no strain. Using default strain.
Warning: gnlti136478041 has no strain. Using default strain.
Warning: gnlti136478042 has no strain. Using default strain.
Warning: gnlti136478043 has no strain. Using default strain.
Warning: gnlti136478044 has no strain. Using default strain.
Warning: gnlti136478045 has no strain. Using default strain.
Warning: gnlti136478046 has no strain. Using default strain.
Warning: gnlti136478047 has no strain. Using default strain.
Warning: gnlti136478048 has no strain. Using default strain.
Warning: gnlti136478049 has no strain. Using default strain.
Warning: gnlti136478050 has no strain. Using default strain.
Warning: gnlti136478051 has no strain. Using default strain.
Warning: gnlti136478052 has no strain. Using default strain.
Warning: gnlti136478053 has no strain. Using default strain.
Warning: gnlti136478054 has no strain. Using default strain.
Warning: gnlti136478055 has no strain. Using default strain.
Warning: gnlti136478056 has no strain. Using default strain.
Warning: gnlti136478057 has no strain. Using default strain.
Warning: gnlti136478058 has no strain. Using default strain.
Warning: gnlti136478059 has no strain. Using default strain.
Warning: gnlti136478060 has no strain. Using default strain.
Warning: gnlti136478061 has no strain. Using default strain.
Warning: gnlti136478062 has no strain. Using default strain.
Warning: gnlti136478063 has no strain. Using default strain.
Warning: gnlti136478064 has no strain. Using default strain.
Warning: gnlti136478065 has no strain. Using default strain.
Warning: gnlti136478066 has no strain. Using default strain.
Warning: gnlti136478067 has no strain. Using default strain.
Warning: gnlti136478068 has no strain. Using default strain.
Warning: gnlti136478069 has no strain. Using default strain.
Warning: gnlti136478070 has no strain. Using default strain.
Warning: gnlti136478071 has no strain. Using default strain.
Warning: gnlti136478072 has no strain. Using default strain.
Warning: gnlti136478073 has no strain. Using default strain.
Warning: gnlti136478074 has no strain. Using default strain.
Warning: gnlti136478075 has no strain. Using default strain.
Warning: gnlti136478076 has no strain. Using default strain.
Warning: gnlti136478077 has no strain. Using default strain.
Warning: gnlti136478078 has no strain. Using default strain.
Warning: gnlti136478079 has no strain. Using default strain.
Warning: gnlti136478080 has no strain. Using default strain.
Warning: gnlti136478081 has no strain. Using default strain.
Warning: gnlti136478082 has no strain. Using default strain.
Warning: gnlti136478083 has no strain. Using default strain.
Warning: gnlti136478084 has no strain. Using default strain.
Warning: gnlti136478085 has no strain. Using default strain.
Warning: gnlti136478086 has no strain. Using default strain.
Warning: gnlti136478087 has no strain. Using default strain.
Warning: gnlti136478088 has no strain. Using default strain.
Warning: gnlti136478089 has no strain. Using default strain.
Warning: gnlti136478090 has no strain. Using default strain.
Warning: gnlti136478091 has no strain. Using default strain.
Warning: gnlti136478092 has no strain. Using default strain.
Warning: gnlti136478093 has no strain. Using default strain.
Warning: gnlti136478094 has no strain. Using default strain.
Warning: gnlti136478095 has no strain. Using default strain.
Warning: gnlti136478096 has no strain. Using default strain.
Warning: gnlti136478097 has no strain. Using default strain.
Warning: gnlti136478098 has no strain. Using default strain.
Warning: gnlti136478099 has no strain. Using default strain.
Warning: gnlti136478100 has no strain. Using default strain.
Warning: gnlti136478101 has no strain. Using default strain.
Warning: gnlti136478102 has no strain. Using default strain.
Warning: gnlti136478103 has no strain. Using default strain.
Warning: gnlti136478104 has no strain. Using default strain.
Warning: gnlti136478105 has no strain. Using default strain.
Warning: gnlti136478106 has no strain. Using default strain.
Warning: gnlti136478107 has no strain. Using default strain.
Warning: gnlti136478108 has no strain. Using default strain.
Warning: gnlti136478109 has no strain. Using default strain.
Warning: gnlti136478110 has no strain. Using default strain.
Warning: gnlti136478111 has no strain. Using default strain.
Warning: gnlti136478112 has no strain. Using default strain.
Warning: gnlti136478113 has no strain. Using default strain.
Warning: gnlti136478114 has no strain. Using default strain.
Warning: gnlti136478115 has no strain. Using default strain.
Warning: gnlti136478116 has no strain. Using default strain.
Warning: gnlti136478117 has no strain. Using default strain.
Warning: gnlti136478118 has no strain. Using default strain.
Warning: gnlti136478119 has no strain. Using default strain.
Warning: gnlti136478120 has no strain. Using default strain.
Warning: gnlti136478121 has no strain. Using default strain.
Warning: gnlti136478122 has no strain. Using default strain.
Warning: gnlti136478123 has no strain. Using default strain.
Warning: gnlti136478124 has no strain. Using default strain.
Warning: gnlti136478125 has no strain. Using default strain.
Warning: gnlti136478126 has no strain. Using default strain.
Warning: gnlti136478127 has no strain. Using default strain.
Warning: gnlti136478128 has no strain. Using default strain.
Warning: gnlti136478129 has no strain. Using default strain.
Warning: gnlti136478130 has no strain. Using default strain.
Warning: gnlti136478131 has no strain. Using default strain.
Warning: gnlti136478132 has no strain. Using default strain.
Warning: gnlti136478133 has no strain. Using default strain.
Warning: gnlti136478134 has no strain. Using default strain.
Warning: gnlti136478135 has no strain. Using default strain.
Warning: gnlti136478136 has no strain. Using default strain.
Warning: gnlti136478137 has no strain. Using default strain.
Warning: gnlti136478138 has no strain. Using default strain.
Warning: gnlti136478139 has no strain. Using default strain.
Warning: gnlti136478140 has no strain. Using default strain.
Warning: gnlti136478141 has no strain. Using default strain.
Warning: gnlti136478142 has no strain. Using default strain.
Warning: gnlti136478143 has no strain. Using default strain.
Warning: gnlti136478144 has no strain. Using default strain.
Warning: gnlti136478145 has no strain. Using default strain.
Warning: gnlti136478146 has no strain. Using default strain.
Warning: gnlti136478147 has no strain. Using default strain.
Warning: gnlti136478148 has no strain. Using default strain.
Warning: gnlti136478149 has no strain. Using default strain.
Warning: gnlti136478150 has no strain. Using default strain.
Warning: gnlti136478151 has no strain. Using default strain.
Warning: gnlti136478152 has no strain. Using default strain.
Warning: gnlti136478153 has no strain. Using default strain.
Warning: gnlti136478154 has no strain. Using default strain.
Warning: gnlti136478155 has no strain. Using default strain.
Warning: gnlti136478156 has no strain. Using default strain.
Warning: gnlti136478157 has no strain. Using default strain.
Warning: gnlti136478158 has no strain. Using default strain.
Warning: gnlti136478159 has no strain. Using default strain.
Warning: gnlti136478160 has no strain. Using default strain.
Warning: gnlti136478161 has no strain. Using default strain.
Warning: gnlti136478162 has no strain. Using default strain.
Warning: gnlti136478163 has no strain. Using default strain.
Warning: gnlti136478164 has no strain. Using default strain.
Warning: gnlti136478165 has no strain. Using default strain.
Warning: gnlti136478166 has no strain. Using default strain.
Warning: gnlti136478167 has no strain. Using default strain.
Warning: gnlti136478168 has no strain. Using default strain.
Warning: gnlti136478169 has no strain. Using default strain.
Warning: gnlti136478170 has no strain. Using default strain.
Warning: gnlti136478171 has no strain. Using default strain.
Warning: gnlti136478172 has no strain. Using default strain.
Warning: gnlti136478173 has no strain. Using default strain.
Warning: gnlti136478174 has no strain. Using default strain.
Warning: gnlti136478175 has no strain. Using default strain.
Warning: gnlti136478176 has no strain. Using default strain.
Warning: gnlti136478177 has no strain. Using default strain.
Warning: gnlti136478178 has no strain. Using default strain.
Warning: gnlti136478179 has no strain. Using default strain.
Warning: gnlti136478180 has no strain. Using default strain.
Warning: gnlti136478181 has no strain. Using default strain.
Warning: gnlti136478182 has no strain. Using default strain.
Warning: gnlti136478183 has no strain. Using default strain.
Warning: gnlti136478184 has no strain. Using default strain.
Warning: gnlti136478185 has no strain. Using default strain.
Warning: gnlti136478186 has no strain. Using default strain.
Warning: gnlti136478187 has no strain. Using default strain.
Warning: gnlti136478188 has no strain. Using default strain.
Warning: gnlti136478189 has no strain. Using default strain.
Warning: gnlti136478190 has no strain. Using default strain.
Warning: gnlti136478191 has no strain. Using default strain.
Warning: gnlti136478192 has no strain. Using default strain.
Warning: gnlti136478193 has no strain. Using default strain.
Warning: gnlti136478194 has no strain. Using default strain.
Warning: gnlti136478195 has no strain. Using default strain.
Warning: gnlti136478196 has no strain. Using default strain.
Warning: gnlti136478197 has no strain. Using default strain.
Warning: gnlti136478198 has no strain. Using default strain.
Warning: gnlti136478199 has no strain. Using default strain.
Warning: gnlti136478200 has no strain. Using default strain.
Warning: gnlti136478201 has no strain. Using default strain.
Warning: gnlti136478202 has no strain. Using default strain.
Warning: gnlti136478203 has no strain. Using default strain.
Warning: gnlti136478204 has no strain. Using default strain.
Warning: gnlti136478205 has no strain. Using default strain.
Warning: gnlti136478206 has no strain. Using default strain.
Warning: gnlti136478207 has no strain. Using default strain.
Warning: gnlti136478208 has no strain. Using default strain.
Warning: gnlti136478209 has no strain. Using default strain.
Warning: gnlti136478210 has no strain. Using default strain.
Warning: gnlti136478211 has no strain. Using default strain.
Warning: gnlti136478212 has no strain. Using default strain.
Warning: gnlti136478213 has no strain. Using default strain.
Warning: gnlti136478214 has no strain. Using default strain.
Warning: gnlti136478215 has no strain. Using default strain.
Warning: gnlti136478216 has no strain. Using default strain.
Warning: gnlti136478217 has no strain. Using default strain.
Warning: gnlti136478218 has no strain. Using default strain.
Warning: gnlti136478219 has no strain. Using default strain.
Warning: gnlti136478220 has no strain. Using default strain.
Warning: gnlti136478221 has no strain. Using default strain.
Warning: gnlti136478222 has no strain. Using default strain.
Warning: gnlti136478223 has no strain. Using default strain.
Warning: gnlti136478224 has no strain. Using default strain.
Warning: gnlti136478225 has no strain. Using default strain.
Warning: gnlti136478226 has no strain. Using default strain.
Warning: gnlti136478227 has no strain. Using default strain.
Warning: gnlti136478228 has no strain. Using default strain.
Warning: gnlti136478229 has no strain. Using default strain.
Warning: gnlti136478230 has no strain. Using default strain.
Warning: gnlti136478231 has no strain. Using default strain.
Warning: gnlti136478232 has no strain. Using default strain.
Warning: gnlti136478233 has no strain. Using default strain.
Warning: gnlti136478234 has no strain. Using default strain.
Warning: gnlti136478235 has no strain. Using default strain.
Warning: gnlti136478236 has no strain. Using default strain.
Warning: gnlti136478237 has no strain. Using default strain.
Warning: gnlti136478238 has no strain. Using default strain.
Warning: gnlti136478239 has no strain. Using default strain.
Warning: gnlti136478240 has no strain. Using default strain.
Warning: gnlti136478241 has no strain. Using default strain.
Warning: gnlti136478242 has no strain. Using default strain.
Warning: gnlti136478243 has no strain. Using default strain.
Warning: gnlti136478244 has no strain. Using default strain.
Warning: gnlti136478245 has no strain. Using default strain.
Warning: gnlti136478246 has no strain. Using default strain.
Warning: gnlti136478247 has no strain. Using default strain.
Warning: gnlti136478248 has no strain. Using default strain.
Warning: gnlti136478249 has no strain. Using default strain.
Warning: gnlti136478250 has no strain. Using default strain.
Warning: gnlti136478251 has no strain. Using default strain.
Warning: gnlti136478252 has no strain. Using default strain.
Warning: gnlti136478253 has no strain. Using default strain.
Warning: gnlti136478254 has no strain. Using default strain.
Warning: gnlti136478255 has no strain. Using default strain.
Warning: gnlti136478256 has no strain. Using default strain.
Warning: gnlti136478257 has no strain. Using default strain.
Warning: gnlti136478258 has no strain. Using default strain.
Warning: gnlti136478259 has no strain. Using default strain.
Warning: gnlti136478260 has no strain. Using default strain.
Warning: gnlti136478261 has no strain. Using default strain.
Warning: gnlti136478262 has no strain. Using default strain.
Warning: gnlti136478263 has no strain. Using default strain.
Warning: gnlti136478264 has no strain. Using default strain.
Warning: gnlti136478265 has no strain. Using default strain.
Warning: gnlti136478266 has no strain. Using default strain.
Warning: gnlti136478267 has no strain. Using default strain.
Warning: gnlti136478268 has no strain. Using default strain.
Warning: gnlti136478269 has no strain. Using default strain.
Warning: gnlti136478270 has no strain. Using default strain.
Warning: gnlti136478271 has no strain. Using default strain.
Warning: gnlti136478272 has no strain. Using default strain.
Warning: gnlti136478273 has no strain. Using default strain.
Warning: gnlti136478274 has no strain. Using default strain.
Warning: gnlti136478275 has no strain. Using default strain.
Warning: gnlti136478276 has no strain. Using default strain.
Warning: gnlti136478277 has no strain. Using default strain.
Warning: gnlti136478278 has no strain. Using default strain.
Warning: gnlti136478279 has no strain. Using default strain.
Warning: gnlti136478280 has no strain. Using default strain.
Warning: gnlti136478281 has no strain. Using default strain.
Warning: gnlti136478282 has no strain. Using default strain.
Warning: gnlti136478283 has no strain. Using default strain.
Warning: gnlti136478284 has no strain. Using default strain.
Warning: gnlti136478285 has no strain. Using default strain.
Warning: gnlti136478286 has no strain. Using default strain.
Warning: gnlti136478287 has no strain. Using default strain.
Warning: gnlti136478288 has no strain. Using default strain.
Warning: gnlti136478289 has no strain. Using default strain.
Warning: gnlti136478290 has no strain. Using default strain.
Warning: gnlti136478291 has no strain. Using default strain.
Warning: gnlti136478292 has no strain. Using default strain.
Warning: gnlti136478293 has no strain. Using default strain.
Warning: gnlti136478294 has no strain. Using default strain.
Warning: gnlti136478295 has no strain. Using default strain.
Warning: gnlti136478296 has no strain. Using default strain.
Warning: gnlti136478297 has no strain. Using default strain.
Warning: gnlti136478298 has no strain. Using default strain.
Warning: gnlti136478299 has no strain. Using default strain.
Warning: gnlti136478300 has no strain. Using default strain.
Warning: gnlti136478301 has no strain. Using default strain.
Warning: gnlti136478302 has no strain. Using default strain.
Warning: gnlti136478303 has no strain. Using default strain.
Warning: gnlti136478304 has no strain. Using default strain.
Warning: gnlti136478305 has no strain. Using default strain.
Warning: gnlti136478306 has no strain. Using default strain.
Warning: gnlti136478307 has no strain. Using default strain.
Warning: gnlti136478308 has no strain. Using default strain.
Warning: gnlti136478309 has no strain. Using default strain.
Warning: gnlti136478310 has no strain. Using default strain.
Warning: gnlti136478311 has no strain. Using default strain.
Warning: gnlti136478312 has no strain. Using default strain.
Warning: gnlti136478313 has no strain. Using default strain.
Warning: gnlti136478314 has no strain. Using default strain.
Warning: gnlti136478315 has no strain. Using default strain.
Warning: gnlti136478316 has no strain. Using default strain.
Warning: gnlti136478317 has no strain. Using default strain.
Warning: gnlti136478318 has no strain. Using default strain.
Warning: gnlti136478319 has no strain. Using default strain.
Warning: gnlti136478320 has no strain. Using default strain.
Warning: gnlti136478321 has no strain. Using default strain.
Warning: gnlti136478322 has no strain. Using default strain.
Warning: gnlti136478323 has no strain. Using default strain.
Warning: gnlti136478324 has no strain. Using default strain.
Warning: gnlti136478325 has no strain. Using default strain.
Warning: gnlti136478326 has no strain. Using default strain.
Warning: gnlti136478327 has no strain. Using default strain.
Warning: gnlti136478328 has no strain. Using default strain.
Warning: gnlti136478329 has no strain. Using default strain.
Warning: gnlti136478330 has no strain. Using default strain.
Warning: gnlti136478331 has no strain. Using default strain.
Warning: gnlti136478332 has no strain. Using default strain.
Warning: gnlti136478333 has no strain. Using default strain.
Warning: gnlti136478334 has no strain. Using default strain.
Warning: gnlti136478335 has no strain. Using default strain.
Warning: gnlti136478336 has no strain. Using default strain.
Warning: gnlti136478337 has no strain. Using default strain.
Warning: gnlti136478338 has no strain. Using default strain.
Warning: gnlti136478339 has no strain. Using default strain.
Warning: gnlti136478340 has no strain. Using default strain.
Warning: gnlti136478341 has no strain. Using default strain.
Warning: gnlti136478342 has no strain. Using default strain.
Warning: gnlti136478343 has no strain. Using default strain.
Warning: gnlti136478344 has no strain. Using default strain.
Warning: gnlti136478345 has no strain. Using default strain.
Warning: gnlti136478346 has no strain. Using default strain.
Warning: gnlti136478347 has no strain. Using default strain.
Warning: gnlti136478348 has no strain. Using default strain.
Warning: gnlti136478349 has no strain. Using default strain.
Warning: gnlti136478350 has no strain. Using default strain.
Warning: gnlti136478351 has no strain. Using default strain.
Warning: gnlti136478352 has no strain. Using default strain.
Warning: gnlti136478353 has no strain. Using default strain.
Warning: gnlti136478354 has no strain. Using default strain.
Warning: gnlti136478355 has no strain. Using default strain.
Warning: gnlti136478356 has no strain. Using default strain.
Warning: gnlti136478357 has no strain. Using default strain.
Warning: gnlti136478358 has no strain. Using default strain.
Warning: gnlti136478359 has no strain. Using default strain.
Warning: gnlti136478360 has no strain. Using default strain.
Warning: gnlti136478361 has no strain. Using default strain.
Warning: gnlti136478362 has no strain. Using default strain.
Warning: gnlti136478363 has no strain. Using default strain.
Warning: gnlti136478364 has no strain. Using default strain.
Warning: gnlti136478365 has no strain. Using default strain.
Warning: gnlti136478366 has no strain. Using default strain.
Warning: gnlti136478367 has no strain. Using default strain.
Warning: gnlti136478368 has no strain. Using default strain.
Warning: gnlti136478369 has no strain. Using default strain.
Warning: gnlti136478370 has no strain. Using default strain.
Warning: gnlti136478371 has no strain. Using default strain.
Warning: gnlti136478372 has no strain. Using default strain.
Warning: gnlti136478373 has no strain. Using default strain.
Warning: gnlti136478374 has no strain. Using default strain.
Warning: gnlti136478375 has no strain. Using default strain.
Warning: gnlti136478376 has no strain. Using default strain.
Warning: gnlti136478377 has no strain. Using default strain.
Warning: gnlti136478378 has no strain. Using default strain.
Warning: gnlti136478379 has no strain. Using default strain.
Warning: gnlti136478380 has no strain. Using default strain.
Warning: gnlti136478381 has no strain. Using default strain.
Warning: gnlti136478382 has no strain. Using default strain.
Warning: gnlti136478383 has no strain. Using default strain.
Warning: gnlti136478384 has no strain. Using default strain.
Warning: gnlti136478385 has no strain. Using default strain.
Warning: gnlti136478386 has no strain. Using default strain.
Warning: gnlti136478387 has no strain. Using default strain.
Warning: gnlti136478388 has no strain. Using default strain.
Warning: gnlti136478389 has no strain. Using default strain.
Warning: gnlti136478390 has no strain. Using default strain.
Warning: gnlti136478391 has no strain. Using default strain.
Warning: gnlti136478392 has no strain. Using default strain.
Warning: gnlti136478393 has no strain. Using default strain.
Warning: gnlti136478394 has no strain. Using default strain.
Warning: gnlti136478395 has no strain. Using default strain.
Warning: gnlti136478396 has no strain. Using default strain.
Warning: gnlti136478397 has no strain. Using default strain.
Warning: gnlti136478398 has no strain. Using default strain.
Warning: gnlti136478399 has no strain. Using default strain.
Warning: gnlti136478400 has no strain. Using default strain.
Warning: gnlti136478401 has no strain. Using default strain.
Warning: gnlti136478402 has no strain. Using default strain.
Warning: gnlti136478403 has no strain. Using default strain.
Warning: gnlti136478404 has no strain. Using default strain.
Warning: gnlti136478405 has no strain. Using default strain.
Warning: gnlti136478406 has no strain. Using default strain.
Warning: gnlti136478407 has no strain. Using default strain.
Warning: gnlti136478408 has no strain. Using default strain.
Warning: gnlti136478409 has no strain. Using default strain.
Warning: gnlti136478410 has no strain. Using default strain.
Warning: gnlti136478411 has no strain. Using default strain.
Warning: gnlti136478412 has no strain. Using default strain.
Warning: gnlti136478413 has no strain. Using default strain.
Warning: gnlti136478414 has no strain. Using default strain.
Warning: gnlti136478415 has no strain. Using default strain.
Warning: gnlti136478416 has no strain. Using default strain.
Warning: gnlti136478417 has no strain. Using default strain.
Warning: gnlti136478418 has no strain. Using default strain.
Warning: gnlti136478419 has no strain. Using default strain.
Warning: gnlti136478420 has no strain. Using default strain.
Warning: gnlti136478421 has no strain. Using default strain.
Warning: gnlti136478422 has no strain. Using default strain.
Warning: gnlti136478423 has no strain. Using default strain.
Warning: gnlti136478424 has no strain. Using default strain.
Warning: gnlti136478425 has no strain. Using default strain.
Warning: gnlti136478426 has no strain. Using default strain.
Warning: gnlti136478427 has no strain. Using default strain.
Warning: gnlti136478428 has no strain. Using default strain.
Warning: gnlti136478429 has no strain. Using default strain.
Warning: gnlti136478430 has no strain. Using default strain.
Warning: gnlti136478431 has no strain. Using default strain.
Warning: gnlti136478432 has no strain. Using default strain.
Warning: gnlti136478433 has no strain. Using default strain.
Warning: gnlti136478434 has no strain. Using default strain.
Warning: gnlti136478435 has no strain. Using default strain.
Warning: gnlti136478436 has no strain. Using default strain.
Warning: gnlti136478437 has no strain. Using default strain.
Warning: gnlti136478438 has no strain. Using default strain.
Warning: gnlti136478439 has no strain. Using default strain.
Warning: gnlti136478440 has no strain. Using default strain.
Warning: gnlti136478441 has no strain. Using default strain.
Warning: gnlti136478442 has no strain. Using default strain.
Warning: gnlti136478443 has no strain. Using default strain.
Warning: gnlti136478444 has no strain. Using default strain.
Warning: gnlti136478445 has no strain. Using default strain.
Warning: gnlti136478446 has no strain. Using default strain.
Warning: gnlti136478447 has no strain. Using default strain.
Warning: gnlti136478448 has no strain. Using default strain.
Warning: gnlti136478449 has no strain. Using default strain.
Warning: gnlti136478450 has no strain. Using default strain.
Warning: gnlti136478451 has no strain. Using default strain.
Warning: gnlti136478452 has no strain. Using default strain.
Warning: gnlti136478453 has no strain. Using default strain.
Warning: gnlti136478454 has no strain. Using default strain.
Warning: gnlti136478455 has no strain. Using default strain.
Warning: gnlti136478456 has no strain. Using default strain.
Warning: gnlti136478457 has no strain. Using default strain.
Warning: gnlti136478458 has no strain. Using default strain.
Warning: gnlti136478459 has no strain. Using default strain.
Warning: gnlti136478460 has no strain. Using default strain.
Warning: gnlti136478461 has no strain. Using default strain.
Warning: gnlti136478462 has no strain. Using default strain.
Warning: gnlti136478463 has no strain. Using default strain.
Warning: gnlti136478464 has no strain. Using default strain.
Warning: gnlti136478465 has no strain. Using default strain.
Warning: gnlti136478466 has no strain. Using default strain.
Warning: gnlti136478467 has no strain. Using default strain.
Warning: gnlti136478468 has no strain. Using default strain.
Warning: gnlti136478469 has no strain. Using default strain.
Warning: gnlti136478470 has no strain. Using default strain.
Warning: gnlti136478471 has no strain. Using default strain.
Warning: gnlti136478472 has no strain. Using default strain.
Warning: gnlti136478473 has no strain. Using default strain.
Warning: gnlti136478474 has no strain. Using default strain.
Warning: gnlti136478475 has no strain. Using default strain.
Warning: gnlti136478476 has no strain. Using default strain.
Warning: gnlti136478477 has no strain. Using default strain.
Warning: gnlti136478478 has no strain. Using default strain.
Warning: gnlti136478479 has no strain. Using default strain.
Warning: gnlti136478480 has no strain. Using default strain.
Warning: gnlti136478481 has no strain. Using default strain.
Warning: gnlti136478482 has no strain. Using default strain.
Warning: gnlti136478483 has no strain. Using default strain.
Warning: gnlti136478484 has no strain. Using default strain.
Warning: gnlti136478485 has no strain. Using default strain.
Warning: gnlti136478486 has no strain. Using default strain.
Warning: gnlti136478487 has no strain. Using default strain.
Warning: gnlti136478488 has no strain. Using default strain.
Warning: gnlti136478489 has no strain. Using default strain.
Warning: gnlti136478490 has no strain. Using default strain.
Warning: gnlti136478491 has no strain. Using default strain.
Warning: gnlti136478492 has no strain. Using default strain.
Warning: gnlti136478493 has no strain. Using default strain.
Warning: gnlti136478494 has no strain. Using default strain.
Warning: gnlti136478495 has no strain. Using default strain.
Warning: gnlti136478496 has no strain. Using default strain.
Warning: gnlti136478497 has no strain. Using default strain.
Warning: gnlti136478498 has no strain. Using default strain.
Warning: gnlti136478499 has no strain. Using default strain.
Warning: gnlti136478500 has no strain. Using default strain.
Warning: gnlti136478501 has no strain. Using default strain.
Warning: gnlti136478502 has no strain. Using default strain.
Warning: gnlti136478503 has no strain. Using default strain.
Warning: gnlti136478504 has no strain. Using default strain.
Warning: gnlti136478505 has no strain. Using default strain.
Warning: gnlti136478506 has no strain. Using default strain.
Warning: gnlti136478507 has no strain. Using default strain.
Warning: gnlti136478508 has no strain. Using default strain.
Warning: gnlti136478509 has no strain. Using default strain.
Warning: gnlti136478510 has no strain. Using default strain.
Warning: gnlti136478511 has no strain. Using default strain.
Warning: gnlti136478512 has no strain. Using default strain.
Warning: gnlti136478513 has no strain. Using default strain.
Warning: gnlti136478514 has no strain. Using default strain.
Warning: gnlti136478515 has no strain. Using default strain.
Warning: gnlti136478516 has no strain. Using default strain.
Warning: gnlti136478517 has no strain. Using default strain.
Warning: gnlti136478518 has no strain. Using default strain.
Warning: gnlti136478519 has no strain. Using default strain.
Warning: gnlti136478520 has no strain. Using default strain.
Warning: gnlti136478521 has no strain. Using default strain.
Warning: gnlti136478522 has no strain. Using default strain.
Warning: gnlti136478523 has no strain. Using default strain.
Warning: gnlti136478524 has no strain. Using default strain.
Warning: gnlti136478525 has no strain. Using default strain.
Warning: gnlti136478526 has no strain. Using default strain.
Warning: gnlti136478527 has no strain. Using default strain.
Warning: gnlti136478528 has no strain. Using default strain.
Warning: gnlti136478529 has no strain. Using default strain.
Warning: gnlti136478530 has no strain. Using default strain.
Warning: gnlti136478531 has no strain. Using default strain.
Warning: gnlti136478532 has no strain. Using default strain.
Warning: gnlti136478533 has no strain. Using default strain.
Warning: gnlti136478534 has no strain. Using default strain.
Warning: gnlti136478535 has no strain. Using default strain.
Warning: gnlti136478536 has no strain. Using default strain.
Warning: gnlti136478537 has no strain. Using default strain.
Warning: gnlti136478538 has no strain. Using default strain.
Warning: gnlti136478539 has no strain. Using default strain.
Warning: gnlti136478540 has no strain. Using default strain.
Warning: gnlti136478541 has no strain. Using default strain.
Warning: gnlti136478542 has no strain. Using default strain.
Warning: gnlti136478543 has no strain. Using default strain.
Warning: gnlti136478544 has no strain. Using default strain.
Warning: gnlti136478545 has no strain. Using default strain.
Warning: gnlti136478546 has no strain. Using default strain.
Warning: gnlti136478547 has no strain. Using default strain.
Warning: gnlti136478548 has no strain. Using default strain.
Warning: gnlti136478549 has no strain. Using default strain.
Warning: gnlti136478550 has no strain. Using default strain.
Warning: gnlti136478551 has no strain. Using default strain.
Warning: gnlti136478552 has no strain. Using default strain.
Warning: gnlti136478553 has no strain. Using default strain.
Warning: gnlti136478554 has no strain. Using default strain.
Warning: gnlti136478555 has no strain. Using default strain.
Warning: gnlti136478556 has no strain. Using default strain.
Warning: gnlti136478557 has no strain. Using default strain.
Warning: gnlti136478558 has no strain. Using default strain.
Warning: gnlti136478559 has no strain. Using default strain.
Warning: gnlti136478560 has no strain. Using default strain.
Warning: gnlti136478561 has no strain. Using default strain.
Warning: gnlti136478562 has no strain. Using default strain.
Warning: gnlti136478563 has no strain. Using default strain.
Warning: gnlti136478564 has no strain. Using default strain.
Warning: gnlti136478565 has no strain. Using default strain.
Warning: gnlti136478566 has no strain. Using default strain.
Warning: gnlti136478567 has no strain. Using default strain.
Warning: gnlti136478568 has no strain. Using default strain.
Warning: gnlti136478569 has no strain. Using default strain.
Warning: gnlti136478570 has no strain. Using default strain.
Warning: gnlti136478571 has no strain. Using default strain.
Warning: gnlti136478572 has no strain. Using default strain.
Warning: gnlti136478573 has no strain. Using default strain.
Warning: gnlti136478574 has no strain. Using default strain.
Warning: gnlti136478575 has no strain. Using default strain.
Warning: gnlti136478576 has no strain. Using default strain.
Warning: gnlti136478577 has no strain. Using default strain.
Warning: gnlti136478578 has no strain. Using default strain.
Warning: gnlti136478579 has no strain. Using default strain.
Warning: gnlti136478580 has no strain. Using default strain.
Warning: gnlti136478581 has no strain. Using default strain.
Warning: gnlti136478582 has no strain. Using default strain.
Warning: gnlti136478583 has no strain. Using default strain.
Warning: gnlti136478584 has no strain. Using default strain.
Warning: gnlti136478585 has no strain. Using default strain.
Warning: gnlti136478586 has no strain. Using default strain.
Warning: gnlti136478587 has no strain. Using default strain.
Warning: gnlti136478588 has no strain. Using default strain.
Warning: gnlti136478589 has no strain. Using default strain.
Warning: gnlti136478590 has no strain. Using default strain.
Warning: gnlti136478591 has no strain. Using default strain.
Warning: gnlti136478592 has no strain. Using default strain.
Warning: gnlti136478593 has no strain. Using default strain.
Warning: gnlti136478594 has no strain. Using default strain.
Warning: gnlti136478595 has no strain. Using default strain.
Warning: gnlti136478596 has no strain. Using default strain.
Warning: gnlti136478597 has no strain. Using default strain.
Warning: gnlti136478598 has no strain. Using default strain.
Warning: gnlti136478599 has no strain. Using default strain.
Warning: gnlti136478600 has no strain. Using default strain.
Warning: gnlti136478601 has no strain. Using default strain.
Warning: gnlti136478602 has no strain. Using default strain.
Warning: gnlti136478603 has no strain. Using default strain.
Warning: gnlti136478604 has no strain. Using default strain.
Warning: gnlti136478605 has no strain. Using default strain.
Warning: gnlti136478606 has no strain. Using default strain.
Warning: gnlti136478607 has no strain. Using default strain.
Warning: gnlti136478608 has no strain. Using default strain.
Warning: gnlti136478609 has no strain. Using default strain.
Warning: gnlti136478610 has no strain. Using default strain.
Warning: gnlti136478611 has no strain. Using default strain.
Warning: gnlti136478612 has no strain. Using default strain.
Warning: gnlti136478613 has no strain. Using default strain.
Warning: gnlti136478614 has no strain. Using default strain.
Warning: gnlti136478615 has no strain. Using default strain.
Warning: gnlti136478616 has no strain. Using default strain.
Warning: gnlti136478617 has no strain. Using default strain.
Warning: gnlti136478618 has no strain. Using default strain.
Warning: gnlti136478619 has no strain. Using default strain.
Warning: gnlti136478620 has no strain. Using default strain.
Warning: gnlti136478621 has no strain. Using default strain.
Warning: gnlti136478622 has no strain. Using default strain.
Warning: gnlti136478623 has no strain. Using default strain.
Warning: gnlti136478624 has no strain. Using default strain.
Warning: gnlti136478625 has no strain. Using default strain.
Warning: gnlti136478626 has no strain. Using default strain.
Warning: gnlti136478627 has no strain. Using default strain.
Warning: gnlti136478628 has no strain. Using default strain.
Warning: gnlti136478629 has no strain. Using default strain.
Warning: gnlti136478630 has no strain. Using default strain.
Warning: gnlti136478631 has no strain. Using default strain.
Warning: gnlti136478632 has no strain. Using default strain.
Warning: gnlti136478633 has no strain. Using default strain.
Warning: gnlti136478634 has no strain. Using default strain.
Warning: gnlti136478635 has no strain. Using default strain.
Warning: gnlti136478636 has no strain. Using default strain.
Warning: gnlti136478637 has no strain. Using default strain.
Warning: gnlti136478638 has no strain. Using default strain.
Warning: gnlti136478639 has no strain. Using default strain.
Warning: gnlti136478640 has no strain. Using default strain.
Warning: gnlti136478641 has no strain. Using default strain.
Warning: gnlti136478642 has no strain. Using default strain.
Warning: gnlti136478643 has no strain. Using default strain.
Warning: gnlti136478644 has no strain. Using default strain.
Warning: gnlti136478645 has no strain. Using default strain.
Warning: gnlti136478646 has no strain. Using default strain.
Warning: gnlti136478647 has no strain. Using default strain.
Warning: gnlti136478648 has no strain. Using default strain.
Warning: gnlti136478649 has no strain. Using default strain.
Warning: gnlti136478650 has no strain. Using default strain.
Warning: gnlti136478651 has no strain. Using default strain.
Warning: gnlti136478652 has no strain. Using default strain.
Warning: gnlti136478653 has no strain. Using default strain.
Warning: gnlti136478654 has no strain. Using default strain.
Warning: gnlti136478655 has no strain. Using default strain.
Warning: gnlti136478656 has no strain. Using default strain.
Warning: gnlti136478657 has no strain. Using default strain.
Warning: gnlti136478658 has no strain. Using default strain.
Warning: gnlti136478659 has no strain. Using default strain.
Warning: gnlti136478660 has no strain. Using default strain.
Warning: gnlti136478661 has no strain. Using default strain.
Warning: gnlti136478662 has no strain. Using default strain.
Warning: gnlti136478663 has no strain. Using default strain.
Warning: gnlti136478664 has no strain. Using default strain.
Warning: gnlti136478665 has no strain. Using default strain.
Warning: gnlti136478666 has no strain. Using default strain.
Warning: gnlti136478667 has no strain. Using default strain.
Warning: gnlti136478668 has no strain. Using default strain.
Warning: gnlti136478669 has no strain. Using default strain.
Warning: gnlti136478670 has no strain. Using default strain.
Warning: gnlti136478671 has no strain. Using default strain.
Warning: gnlti136478672 has no strain. Using default strain.
Warning: gnlti136478673 has no strain. Using default strain.
Warning: gnlti136478674 has no strain. Using default strain.
Warning: gnlti136478675 has no strain. Using default strain.
Warning: gnlti136478676 has no strain. Using default strain.
Warning: gnlti136478677 has no strain. Using default strain.
Warning: gnlti136478678 has no strain. Using default strain.
Warning: gnlti136478679 has no strain. Using default strain.
Warning: gnlti136478680 has no strain. Using default strain.
Warning: gnlti136478681 has no strain. Using default strain.
Warning: gnlti136478682 has no strain. Using default strain.
Warning: gnlti136478683 has no strain. Using default strain.
Warning: gnlti136478684 has no strain. Using default strain.
Warning: gnlti136478685 has no strain. Using default strain.
Warning: gnlti136478686 has no strain. Using default strain.
Warning: gnlti136478687 has no strain. Using default strain.
Warning: gnlti136478688 has no strain. Using default strain.
Warning: gnlti136478689 has no strain. Using default strain.
Warning: gnlti136478690 has no strain. Using default strain.
Warning: gnlti136478691 has no strain. Using default strain.
Warning: gnlti136478692 has no strain. Using default strain.
Warning: gnlti136478693 has no strain. Using default strain.
Warning: gnlti136478694 has no strain. Using default strain.
Warning: gnlti136478695 has no strain. Using default strain.
Warning: gnlti136478696 has no strain. Using default strain.
Warning: gnlti136478697 has no strain. Using default strain.
Warning: gnlti136478698 has no strain. Using default strain.
Warning: gnlti136478699 has no strain. Using default strain.
Warning: gnlti136478700 has no strain. Using default strain.
Warning: gnlti136478701 has no strain. Using default strain.
Warning: gnlti136478702 has no strain. Using default strain.
Warning: gnlti136478703 has no strain. Using default strain.
Warning: gnlti136478704 has no strain. Using default strain.
Warning: gnlti136478705 has no strain. Using default strain.
Warning: gnlti136478706 has no strain. Using default strain.
Warning: gnlti136478707 has no strain. Using default strain.
Warning: gnlti136478708 has no strain. Using default strain.
Warning: gnlti136478709 has no strain. Using default strain.
Warning: gnlti136478710 has no strain. Using default strain.
Warning: gnlti136478711 has no strain. Using default strain.
Warning: gnlti136478712 has no strain. Using default strain.
Warning: gnlti136478713 has no strain. Using default strain.
Warning: gnlti136478714 has no strain. Using default strain.
Warning: gnlti136478715 has no strain. Using default strain.
Warning: gnlti136478716 has no strain. Using default strain.
Warning: gnlti136478717 has no strain. Using default strain.
Warning: gnlti136478718 has no strain. Using default strain.
Warning: gnlti136478719 has no strain. Using default strain.
Warning: gnlti136478720 has no strain. Using default strain.
Warning: gnlti136478721 has no strain. Using default strain.
Warning: gnlti136478722 has no strain. Using default strain.
Warning: gnlti136478723 has no strain. Using default strain.
Warning: gnlti136478724 has no strain. Using default strain.
Warning: gnlti136478725 has no strain. Using default strain.
Warning: gnlti136478726 has no strain. Using default strain.
Warning: gnlti136478727 has no strain. Using default strain.
Warning: gnlti136478728 has no strain. Using default strain.
Warning: gnlti136478729 has no strain. Using default strain.
Warning: gnlti136478730 has no strain. Using default strain.
Warning: gnlti136478731 has no strain. Using default strain.
Warning: gnlti136478732 has no strain. Using default strain.
Warning: gnlti136478733 has no strain. Using default strain.
Warning: gnlti136478734 has no strain. Using default strain.
Warning: gnlti136478735 has no strain. Using default strain.
Warning: gnlti136478736 has no strain. Using default strain.
Warning: gnlti136478737 has no strain. Using default strain.
Warning: gnlti136478738 has no strain. Using default strain.
Warning: gnlti136478739 has no strain. Using default strain.
Warning: gnlti136478740 has no strain. Using default strain.
Warning: gnlti136478741 has no strain. Using default strain.
Warning: gnlti136478742 has no strain. Using default strain.
Warning: gnlti136478743 has no strain. Using default strain.
Warning: gnlti136478744 has no strain. Using default strain.
Warning: gnlti136478745 has no strain. Using default strain.
Warning: gnlti136478746 has no strain. Using default strain.
Warning: gnlti136478747 has no strain. Using default strain.
Warning: gnlti136478748 has no strain. Using default strain.
Warning: gnlti136478749 has no strain. Using default strain.
Warning: gnlti136478750 has no strain. Using default strain.
Warning: gnlti136478751 has no strain. Using default strain.
Warning: gnlti136478752 has no strain. Using default strain.
Warning: gnlti136478753 has no strain. Using default strain.
Warning: gnlti136478754 has no strain. Using default strain.
Warning: gnlti136478755 has no strain. Using default strain.
Warning: gnlti136478756 has no strain. Using default strain.
Warning: gnlti136478757 has no strain. Using default strain.
Warning: gnlti136478758 has no strain. Using default strain.
Warning: gnlti136478759 has no strain. Using default strain.
Warning: gnlti136478760 has no strain. Using default strain.
Warning: gnlti136478761 has no strain. Using default strain.
Warning: gnlti136478762 has no strain. Using default strain.
Warning: gnlti136478763 has no strain. Using default strain.
Warning: gnlti136478764 has no strain. Using default strain.
Warning: gnlti136478765 has no strain. Using default strain.
Warning: gnlti136478766 has no strain. Using default strain.
Warning: gnlti136478767 has no strain. Using default strain.
Warning: gnlti136478768 has no strain. Using default strain.
Warning: gnlti136478769 has no strain. Using default strain.
Warning: gnlti136478770 has no strain. Using default strain.
Warning: gnlti136478771 has no strain. Using default strain.
Warning: gnlti136478772 has no strain. Using default strain.
Warning: gnlti136478773 has no strain. Using default strain.
Warning: gnlti136478774 has no strain. Using default strain.
Warning: gnlti136478775 has no strain. Using default strain.
Warning: gnlti136478776 has no strain. Using default strain.
Warning: gnlti136478777 has no strain. Using default strain.
Warning: gnlti136478778 has no strain. Using default strain.
Warning: gnlti136478779 has no strain. Using default strain.
Warning: gnlti136478780 has no strain. Using default strain.
Warning: gnlti136478781 has no strain. Using default strain.
Warning: gnlti136478782 has no strain. Using default strain.
Warning: gnlti136478783 has no strain. Using default strain.
Warning: gnlti136478784 has no strain. Using default strain.
Warning: gnlti136478785 has no strain. Using default strain.
Warning: gnlti136478786 has no strain. Using default strain.
Warning: gnlti136478787 has no strain. Using default strain.
Warning: gnlti136478788 has no strain. Using default strain.
Warning: gnlti136478789 has no strain. Using default strain.
Warning: gnlti136478790 has no strain. Using default strain.
Warning: gnlti136478791 has no strain. Using default strain.
Warning: gnlti136478792 has no strain. Using default strain.
Warning: gnlti136478793 has no strain. Using default strain.
Warning: gnlti136478794 has no strain. Using default strain.
Warning: gnlti136478795 has no strain. Using default strain.
Warning: gnlti136478796 has no strain. Using default strain.
Warning: gnlti136478797 has no strain. Using default strain.
Warning: gnlti136478798 has no strain. Using default strain.
Warning: gnlti136478799 has no strain. Using default strain.
Warning: gnlti136478800 has no strain. Using default strain.
Warning: gnlti136478801 has no strain. Using default strain.
Warning: gnlti136478802 has no strain. Using default strain.
Warning: gnlti136478803 has no strain. Using default strain.
Warning: gnlti136478804 has no strain. Using default strain.
Warning: gnlti136478805 has no strain. Using default strain.
Warning: gnlti136478806 has no strain. Using default strain.
Warning: gnlti136478807 has no strain. Using default strain.
Warning: gnlti136478808 has no strain. Using default strain.
Warning: gnlti136478809 has no strain. Using default strain.
Warning: gnlti136478810 has no strain. Using default strain.
Warning: gnlti136478811 has no strain. Using default strain.
Warning: gnlti136478812 has no strain. Using default strain.
Warning: gnlti136478813 has no strain. Using default strain.
Warning: gnlti136478814 has no strain. Using default strain.
Warning: gnlti136478815 has no strain. Using default strain.
Warning: gnlti136478816 has no strain. Using default strain.
Warning: gnlti136478817 has no strain. Using default strain.
Warning: gnlti136478818 has no strain. Using default strain.
Warning: gnlti136478819 has no strain. Using default strain.
Warning: gnlti136478820 has no strain. Using default strain.
Warning: gnlti136478821 has no strain. Using default strain.
Warning: gnlti136478822 has no strain. Using default strain.
Warning: gnlti136478823 has no strain. Using default strain.
Warning: gnlti136478824 has no strain. Using default strain.
Warning: gnlti136478825 has no strain. Using default strain.
Warning: gnlti136478826 has no strain. Using default strain.
Warning: gnlti136478827 has no strain. Using default strain.
Warning: gnlti136478828 has no strain. Using default strain.
Warning: gnlti136478829 has no strain. Using default strain.
Warning: gnlti136478830 has no strain. Using default strain.
Warning: gnlti136478831 has no strain. Using default strain.
Warning: gnlti136478832 has no strain. Using default strain.
Warning: gnlti136478833 has no strain. Using default strain.
Warning: gnlti136478834 has no strain. Using default strain.
Warning: gnlti136478835 has no strain. Using default strain.
Warning: gnlti136478836 has no strain. Using default strain.
Warning: gnlti136478837 has no strain. Using default strain.
Warning: gnlti136478838 has no strain. Using default strain.
Warning: gnlti136478839 has no strain. Using default strain.
Warning: gnlti136478840 has no strain. Using default strain.
Warning: gnlti136478841 has no strain. Using default strain.
Warning: gnlti136478842 has no strain. Using default strain.
Warning: gnlti136478843 has no strain. Using default strain.
Warning: gnlti136478844 has no strain. Using default strain.
Warning: gnlti136478845 has no strain. Using default strain.
Warning: gnlti136478846 has no strain. Using default strain.
Warning: gnlti136478847 has no strain. Using default strain.
Warning: gnlti136478848 has no strain. Using default strain.
Warning: gnlti136478849 has no strain. Using default strain.
Warning: gnlti136478850 has no strain. Using default strain.
Warning: gnlti136478851 has no strain. Using default strain.
Warning: gnlti136478852 has no strain. Using default strain.
Warning: gnlti136478853 has no strain. Using default strain.
Warning: gnlti136478854 has no strain. Using default strain.
Warning: gnlti136478855 has no strain. Using default strain.
Warning: gnlti136478856 has no strain. Using default strain.
Warning: gnlti136478857 has no strain. Using default strain.
Warning: gnlti136478858 has no strain. Using default strain.
Warning: gnlti136478859 has no strain. Using default strain.
Warning: gnlti136478860 has no strain. Using default strain.
Warning: gnlti136478861 has no strain. Using default strain.
Warning: gnlti136478862 has no strain. Using default strain.
Warning: gnlti136478863 has no strain. Using default strain.
Warning: gnlti136478864 has no strain. Using default strain.
Warning: gnlti136478865 has no strain. Using default strain.
Warning: gnlti136478866 has no strain. Using default strain.
Warning: gnlti136478867 has no strain. Using default strain.
Warning: gnlti136478868 has no strain. Using default strain.
Warning: gnlti136478869 has no strain. Using default strain.
Warning: gnlti136478870 has no strain. Using default strain.
Warning: gnlti136478871 has no strain. Using default strain.
Warning: gnlti136478872 has no strain. Using default strain.
Warning: gnlti136478873 has no strain. Using default strain.
Warning: gnlti136478874 has no strain. Using default strain.
Warning: gnlti136478875 has no strain. Using default strain.
Warning: gnlti136478876 has no strain. Using default strain.
Warning: gnlti136478877 has no strain. Using default strain.
Warning: gnlti136478878 has no strain. Using default strain.
Warning: gnlti136478879 has no strain. Using default strain.
Warning: gnlti136478880 has no strain. Using default strain.
Warning: gnlti136478881 has no strain. Using default strain.
Warning: gnlti136478882 has no strain. Using default strain.
Warning: gnlti136478883 has no strain. Using default strain.
Warning: gnlti136478884 has no strain. Using default strain.
Warning: gnlti136478885 has no strain. Using default strain.
Warning: gnlti136478886 has no strain. Using default strain.
Warning: gnlti136478887 has no strain. Using default strain.
Warning: gnlti136478888 has no strain. Using default strain.
Warning: gnlti136478889 has no strain. Using default strain.
Warning: gnlti136478890 has no strain. Using default strain.
Warning: gnlti136478891 has no strain. Using default strain.
Warning: gnlti136478892 has no strain. Using default strain.
Warning: gnlti136478893 has no strain. Using default strain.
Warning: gnlti136478894 has no strain. Using default strain.
Warning: gnlti136478895 has no strain. Using default strain.
Warning: gnlti136478896 has no strain. Using default strain.
Warning: gnlti136478897 has no strain. Using default strain.
Warning: gnlti136478898 has no strain. Using default strain.
Warning: gnlti136478899 has no strain. Using default strain.
Warning: gnlti136478900 has no strain. Using default strain.
Warning: gnlti136478901 has no strain. Using default strain.
Warning: gnlti136478902 has no strain. Using default strain.
Warning: gnlti136478903 has no strain. Using default strain.
Warning: gnlti136478904 has no strain. Using default strain.
Warning: gnlti136478905 has no strain. Using default strain.
Warning: gnlti136478906 has no strain. Using default strain.
Warning: gnlti136478907 has no strain. Using default strain.
Warning: gnlti136478908 has no strain. Using default strain.
Warning: gnlti136478909 has no strain. Using default strain.
Warning: gnlti136478910 has no strain. Using default strain.
Warning: gnlti136478911 has no strain. Using default strain.
Warning: gnlti136478912 has no strain. Using default strain.
Warning: gnlti136478913 has no strain. Using default strain.
Warning: gnlti136478914 has no strain. Using default strain.
Warning: gnlti136478915 has no strain. Using default strain.
Warning: gnlti136478916 has no strain. Using default strain.
Warning: gnlti136478917 has no strain. Using default strain.
Warning: gnlti136478918 has no strain. Using default strain.
Warning: gnlti136478919 has no strain. Using default strain.
Warning: gnlti136478920 has no strain. Using default strain.
Warning: gnlti136478921 has no strain. Using default strain.
Warning: gnlti136478922 has no strain. Using default strain.
Warning: gnlti136478923 has no strain. Using default strain.
Warning: gnlti136478924 has no strain. Using default strain.
Warning: gnlti136478925 has no strain. Using default strain.
Warning: gnlti136478926 has no strain. Using default strain.
Warning: gnlti136478927 has no strain. Using default strain.
Warning: gnlti136478928 has no strain. Using default strain.
Warning: gnlti136478929 has no strain. Using default strain.
Warning: gnlti136478930 has no strain. Using default strain.
Warning: gnlti136478931 has no strain. Using default strain.
Warning: gnlti136478932 has no strain. Using default strain.
Warning: gnlti136478933 has no strain. Using default strain.
Warning: gnlti136478934 has no strain. Using default strain.
Warning: gnlti136478935 has no strain. Using default strain.
Warning: gnlti136478936 has no strain. Using default strain.
Warning: gnlti136478937 has no strain. Using default strain.
Warning: gnlti136478938 has no strain. Using default strain.
Warning: gnlti136478939 has no strain. Using default strain.
Warning: gnlti136478940 has no strain. Using default strain.
Warning: gnlti136478941 has no strain. Using default strain.
Warning: gnlti136478942 has no strain. Using default strain.
Warning: gnlti136478943 has no strain. Using default strain.
Warning: gnlti136478944 has no strain. Using default strain.
Warning: gnlti136478945 has no strain. Using default strain.
Warning: gnlti136478946 has no strain. Using default strain.
Warning: gnlti136478947 has no strain. Using default strain.
Warning: gnlti136478948 has no strain. Using default strain.
Warning: gnlti136478949 has no strain. Using default strain.
Warning: gnlti136478950 has no strain. Using default strain.
Warning: gnlti136478951 has no strain. Using default strain.
Warning: gnlti136478952 has no strain. Using default strain.
Warning: gnlti136478953 has no strain. Using default strain.
Warning: gnlti136478954 has no strain. Using default strain.
Warning: gnlti136478955 has no strain. Using default strain.
Warning: gnlti136478956 has no strain. Using default strain.
Warning: gnlti136478957 has no strain. Using default strain.
Warning: gnlti136478958 has no strain. Using default strain.
Warning: gnlti136478959 has no strain. Using default strain.
Warning: gnlti136478960 has no strain. Using default strain.
Warning: gnlti136478961 has no strain. Using default strain.
Warning: gnlti136478962 has no strain. Using default strain.
Warning: gnlti136478963 has no strain. Using default strain.
Warning: gnlti136478964 has no strain. Using default strain.
Warning: gnlti136478965 has no strain. Using default strain.
Warning: gnlti136478966 has no strain. Using default strain.
Warning: gnlti136478967 has no strain. Using default strain.
Warning: gnlti136478968 has no strain. Using default strain.
Warning: gnlti136478969 has no strain. Using default strain.
Warning: gnlti136478970 has no strain. Using default strain.
Warning: gnlti136478971 has no strain. Using default strain.
Warning: gnlti136478972 has no strain. Using default strain.
Warning: gnlti136478973 has no strain. Using default strain.
Warning: gnlti136478974 has no strain. Using default strain.
Warning: gnlti136478975 has no strain. Using default strain.
Warning: gnlti136478976 has no strain. Using default strain.
Warning: gnlti136478977 has no strain. Using default strain.
Warning: gnlti136478978 has no strain. Using default strain.
Warning: gnlti136478979 has no strain. Using default strain.
Warning: gnlti136478980 has no strain. Using default strain.
Warning: gnlti136478981 has no strain. Using default strain.
Warning: gnlti136478982 has no strain. Using default strain.
Warning: gnlti136478983 has no strain. Using default strain.
Warning: gnlti136478984 has no strain. Using default strain.
Warning: gnlti136478985 has no strain. Using default strain.
Warning: gnlti136478986 has no strain. Using default strain.
Warning: gnlti136478987 has no strain. Using default strain.
Warning: gnlti136478988 has no strain. Using default strain.
Warning: gnlti136478989 has no strain. Using default strain.
Warning: gnlti136478990 has no strain. Using default strain.
Warning: gnlti136478991 has no strain. Using default strain.
Warning: gnlti136478992 has no strain. Using default strain.
Warning: gnlti136478993 has no strain. Using default strain.
Warning: gnlti136478994 has no strain. Using default strain.
Warning: gnlti136478995 has no strain. Using default strain.
Warning: gnlti136478996 has no strain. Using default strain.
Warning: gnlti136478997 has no strain. Using default strain.
Warning: gnlti136478998 has no strain. Using default strain.
Warning: gnlti136478999 has no strain. Using default strain.
Warning: gnlti136479000 has no strain. Using default strain.
Warning: gnlti136479001 has no strain. Using default strain.
Warning: gnlti136479002 has no strain. Using default strain.
Warning: gnlti136479003 has no strain. Using default strain.
Warning: gnlti136479004 has no strain. Using default strain.
Warning: gnlti136479005 has no strain. Using default strain.
Warning: gnlti136479006 has no strain. Using default strain.
Warning: gnlti136479007 has no strain. Using default strain.
Warning: gnlti136479008 has no strain. Using default strain.
Warning: gnlti136479009 has no strain. Using default strain.
Warning: gnlti136479010 has no strain. Using default strain.
Warning: gnlti136479011 has no strain. Using default strain.
Warning: gnlti136479012 has no strain. Using default strain.
Warning: gnlti136479013 has no strain. Using default strain.
Warning: gnlti136479014 has no strain. Using default strain.
Warning: gnlti136479015 has no strain. Using default strain.
Warning: gnlti136479016 has no strain. Using default strain.
Warning: gnlti136479017 has no strain. Using default strain.
Warning: gnlti136479018 has no strain. Using default strain.
Warning: gnlti136479019 has no strain. Using default strain.
Warning: gnlti136479020 has no strain. Using default strain.
Warning: gnlti136479021 has no strain. Using default strain.
Warning: gnlti136479022 has no strain. Using default strain.
Warning: gnlti136479023 has no strain. Using default strain.
Warning: gnlti136479024 has no strain. Using default strain.
Warning: gnlti136479025 has no strain. Using default strain.
Warning: gnlti136479026 has no strain. Using default strain.
Warning: gnlti136479027 has no strain. Using default strain.
Warning: gnlti136479028 has no strain. Using default strain.
Warning: gnlti136479029 has no strain. Using default strain.
Warning: gnlti136479030 has no strain. Using default strain.
Warning: gnlti136479031 has no strain. Using default strain.
Warning: gnlti136479032 has no strain. Using default strain.
Warning: gnlti136479033 has no strain. Using default strain.
Warning: gnlti136479034 has no strain. Using default strain.
Warning: gnlti136479035 has no strain. Using default strain.
Warning: gnlti136479036 has no strain. Using default strain.
Warning: gnlti136479037 has no strain. Using default strain.
Warning: gnlti136479038 has no strain. Using default strain.
Warning: gnlti136479039 has no strain. Using default strain.
Warning: gnlti136479040 has no strain. Using default strain.
Warning: gnlti136479041 has no strain. Using default strain.
Warning: gnlti136479042 has no strain. Using default strain.
Warning: gnlti136479043 has no strain. Using default strain.
Warning: gnlti136479044 has no strain. Using default strain.
Warning: gnlti136479045 has no strain. Using default strain.
Warning: gnlti136479046 has no strain. Using default strain.
Warning: gnlti136479047 has no strain. Using default strain.
Warning: gnlti136479048 has no strain. Using default strain.
Warning: gnlti136479049 has no strain. Using default strain.
Warning: gnlti136479050 has no strain. Using default strain.
Warning: gnlti136479051 has no strain. Using default strain.
Warning: gnlti136479052 has no strain. Using default strain.
Warning: gnlti136479053 has no strain. Using default strain.
Warning: gnlti136479054 has no strain. Using default strain.
Warning: gnlti136479055 has no strain. Using default strain.
Warning: gnlti136479056 has no strain. Using default strain.
Warning: gnlti136479057 has no strain. Using default strain.
Warning: gnlti136479058 has no strain. Using default strain.
Warning: gnlti136479059 has no strain. Using default strain.
Warning: gnlti136479060 has no strain. Using default strain.
Warning: gnlti136479061 has no strain. Using default strain.
Warning: gnlti136479062 has no strain. Using default strain.
Warning: gnlti136479063 has no strain. Using default strain.
Warning: gnlti136479064 has no strain. Using default strain.
Warning: gnlti136479065 has no strain. Using default strain.
Warning: gnlti136479066 has no strain. Using default strain.
Warning: gnlti136479067 has no strain. Using default strain.
Warning: gnlti136479068 has no strain. Using default strain.
Warning: gnlti136479069 has no strain. Using default strain.
Warning: gnlti136479070 has no strain. Using default strain.
Warning: gnlti136479071 has no strain. Using default strain.
Warning: gnlti136479072 has no strain. Using default strain.
Warning: gnlti136479073 has no strain. Using default strain.
Warning: gnlti136479074 has no strain. Using default strain.
Warning: gnlti136479075 has no strain. Using default strain.
Warning: gnlti136479076 has no strain. Using default strain.
Warning: gnlti136479077 has no strain. Using default strain.
Warning: gnlti136479078 has no strain. Using default strain.
Warning: gnlti136479079 has no strain. Using default strain.
Warning: gnlti136479080 has no strain. Using default strain.
Warning: gnlti136479081 has no strain. Using default strain.
Warning: gnlti136479082 has no strain. Using default strain.
Warning: gnlti136479083 has no strain. Using default strain.
Warning: gnlti136479084 has no strain. Using default strain.
Warning: gnlti136479085 has no strain. Using default strain.
Warning: gnlti136479086 has no strain. Using default strain.
Warning: gnlti136479087 has no strain. Using default strain.
Warning: gnlti136479088 has no strain. Using default strain.
Warning: gnlti136479089 has no strain. Using default strain.
Warning: gnlti136479090 has no strain. Using default strain.
Warning: gnlti136479091 has no strain. Using default strain.
Warning: gnlti136479092 has no strain. Using default strain.
Warning: gnlti136479093 has no strain. Using default strain.
Warning: gnlti136479094 has no strain. Using default strain.
Warning: gnlti136479095 has no strain. Using default strain.
Warning: gnlti136479096 has no strain. Using default strain.
Warning: gnlti136479097 has no strain. Using default strain.
Warning: gnlti136479098 has no strain. Using default strain.
Warning: gnlti136479099 has no strain. Using default strain.
Warning: gnlti136479100 has no strain. Using default strain.
Warning: gnlti136479101 has no strain. Using default strain.
Warning: gnlti136479102 has no strain. Using default strain.
Warning: gnlti136479103 has no strain. Using default strain.
Warning: gnlti136479104 has no strain. Using default strain.
Warning: gnlti136479105 has no strain. Using default strain.
Warning: gnlti136479106 has no strain. Using default strain.
Warning: gnlti136479107 has no strain. Using default strain.
Warning: gnlti136479108 has no strain. Using default strain.
Warning: gnlti136479109 has no strain. Using default strain.
Warning: gnlti136479110 has no strain. Using default strain.
Warning: gnlti136479111 has no strain. Using default strain.
Warning: gnlti136479112 has no strain. Using default strain.
Warning: gnlti136479113 has no strain. Using default strain.
Warning: gnlti136479114 has no strain. Using default strain.
Warning: gnlti136479115 has no strain. Using default strain.
Warning: gnlti136479116 has no strain. Using default strain.
Warning: gnlti136479117 has no strain. Using default strain.
Warning: gnlti136479118 has no strain. Using default strain.
Warning: gnlti136479119 has no strain. Using default strain.
Warning: gnlti136479120 has no strain. Using default strain.
Warning: gnlti136479121 has no strain. Using default strain.
Warning: gnlti136479122 has no strain. Using default strain.
Warning: gnlti136479123 has no strain. Using default strain.
Warning: gnlti136479124 has no strain. Using default strain.
Warning: gnlti136479125 has no strain. Using default strain.
Warning: gnlti136479126 has no strain. Using default strain.
Warning: gnlti136479127 has no strain. Using default strain.
Warning: gnlti136479128 has no strain. Using default strain.
Warning: gnlti136479129 has no strain. Using default strain.
Warning: gnlti136479130 has no strain. Using default strain.
Warning: gnlti136479131 has no strain. Using default strain.
Warning: gnlti136479132 has no strain. Using default strain.
Warning: gnlti136479133 has no strain. Using default strain.
Warning: gnlti136479134 has no strain. Using default strain.
Warning: gnlti136479135 has no strain. Using default strain.
Warning: gnlti136479136 has no strain. Using default strain.
Warning: gnlti136479137 has no strain. Using default strain.
Warning: gnlti136479138 has no strain. Using default strain.
Warning: gnlti136479139 has no strain. Using default strain.
Warning: gnlti136479140 has no strain. Using default strain.
Warning: gnlti136479141 has no strain. Using default strain.
Warning: gnlti136479142 has no strain. Using default strain.
Warning: gnlti136479143 has no strain. Using default strain.
Warning: gnlti136479144 has no strain. Using default strain.
Warning: gnlti136479145 has no strain. Using default strain.
Warning: gnlti136479146 has no strain. Using default strain.
Warning: gnlti136479147 has no strain. Using default strain.
Warning: gnlti136479148 has no strain. Using default strain.
Warning: gnlti136479149 has no strain. Using default strain.
Warning: gnlti136479150 has no strain. Using default strain.
Warning: gnlti136479151 has no strain. Using default strain.
Warning: gnlti136479152 has no strain. Using default strain.
Warning: gnlti136479153 has no strain. Using default strain.
Warning: gnlti136479154 has no strain. Using default strain.
Warning: gnlti136479155 has no strain. Using default strain.
Warning: gnlti136479156 has no strain. Using default strain.
Warning: gnlti136479157 has no strain. Using default strain.
Warning: gnlti136479158 has no strain. Using default strain.
Warning: gnlti136479159 has no strain. Using default strain.
Warning: gnlti136479160 has no strain. Using default strain.
Warning: gnlti136479161 has no strain. Using default strain.
Warning: gnlti136479162 has no strain. Using default strain.
Warning: gnlti136479163 has no strain. Using default strain.
Warning: gnlti136479164 has no strain. Using default strain.
Warning: gnlti136479165 has no strain. Using default strain.
Warning: gnlti136479166 has no strain. Using default strain.
Warning: gnlti136479167 has no strain. Using default strain.
Warning: gnlti136479168 has no strain. Using default strain.
Warning: gnlti136479169 has no strain. Using default strain.
Warning: gnlti136479170 has no strain. Using default strain.
Warning: gnlti136479171 has no strain. Using default strain.
Warning: gnlti136479172 has no strain. Using default strain.
Warning: gnlti136479173 has no strain. Using default strain.
Warning: gnlti136479174 has no strain. Using default strain.
Warning: gnlti136479175 has no strain. Using default strain.
Warning: gnlti136479176 has no strain. Using default strain.
Warning: gnlti136479177 has no strain. Using default strain.
Warning: gnlti136479178 has no strain. Using default strain.
Warning: gnlti136479179 has no strain. Using default strain.
Warning: gnlti136479180 has no strain. Using default strain.
Warning: gnlti136479181 has no strain. Using default strain.
Warning: gnlti136479182 has no strain. Using default strain.
Warning: gnlti136479183 has no strain. Using default strain.
Warning: gnlti136479184 has no strain. Using default strain.
Warning: gnlti136479185 has no strain. Using default strain.
Warning: gnlti136479186 has no strain. Using default strain.
Warning: gnlti136479187 has no strain. Using default strain.
Warning: gnlti136479188 has no strain. Using default strain.
Warning: gnlti136479189 has no strain. Using default strain.
Warning: gnlti136479190 has no strain. Using default strain.
Warning: gnlti136479191 has no strain. Using default strain.
Warning: gnlti136479192 has no strain. Using default strain.
Warning: gnlti136479193 has no strain. Using default strain.
Warning: gnlti136479194 has no strain. Using default strain.
Warning: gnlti136479195 has no strain. Using default strain.
Warning: gnlti136479196 has no strain. Using default strain.
Warning: gnlti136479197 has no strain. Using default strain.
Warning: gnlti136479198 has no strain. Using default strain.
Warning: gnlti136479199 has no strain. Using default strain.
Warning: gnlti136479200 has no strain. Using default strain.
Warning: gnlti136479201 has no strain. Using default strain.
Warning: gnlti136479202 has no strain. Using default strain.
Warning: gnlti136479203 has no strain. Using default strain.
Warning: gnlti136479204 has no strain. Using default strain.
Warning: gnlti136479205 has no strain. Using default strain.
Warning: gnlti136479206 has no strain. Using default strain.
Warning: gnlti136479207 has no strain. Using default strain.
Warning: gnlti136479208 has no strain. Using default strain.
Warning: gnlti136479209 has no strain. Using default strain.
Warning: gnlti136479210 has no strain. Using default strain.
Warning: gnlti136479211 has no strain. Using default strain.
Warning: gnlti136479212 has no strain. Using default strain.
Warning: gnlti136479213 has no strain. Using default strain.
Warning: gnlti136479214 has no strain. Using default strain.
Warning: gnlti136479215 has no strain. Using default strain.
Warning: gnlti136479216 has no strain. Using default strain.
Warning: gnlti136479217 has no strain. Using default strain.
Warning: gnlti136479218 has no strain. Using default strain.
Warning: gnlti136479219 has no strain. Using default strain.
Warning: gnlti136479220 has no strain. Using default strain.
Warning: gnlti136479221 has no strain. Using default strain.
Warning: gnlti136479222 has no strain. Using default strain.
Warning: gnlti136479223 has no strain. Using default strain.
Warning: gnlti136479224 has no strain. Using default strain.
Warning: gnlti136479225 has no strain. Using default strain.
Warning: gnlti136479226 has no strain. Using default strain.
Warning: gnlti136479227 has no strain. Using default strain.
Warning: gnlti136479228 has no strain. Using default strain.
Warning: gnlti136479229 has no strain. Using default strain.
Warning: gnlti136479230 has no strain. Using default strain.
Warning: gnlti136479231 has no strain. Using default strain.
Warning: gnlti136479232 has no strain. Using default strain.
Warning: gnlti136479233 has no strain. Using default strain.
Warning: gnlti136479234 has no strain. Using default strain.
Warning: gnlti136479235 has no strain. Using default strain.
Warning: gnlti136479236 has no strain. Using default strain.
Warning: gnlti136479237 has no strain. Using default strain.
Warning: gnlti136479238 has no strain. Using default strain.
Warning: gnlti136479239 has no strain. Using default strain.
Warning: gnlti136479240 has no strain. Using default strain.
Warning: gnlti136479241 has no strain. Using default strain.
Warning: gnlti136479242 has no strain. Using default strain.
Warning: gnlti136479243 has no strain. Using default strain.
Warning: gnlti136479244 has no strain. Using default strain.
Warning: gnlti136479245 has no strain. Using default strain.
Warning: gnlti136479246 has no strain. Using default strain.
Warning: gnlti136479247 has no strain. Using default strain.
Warning: gnlti136479248 has no strain. Using default strain.
Warning: gnlti136479249 has no strain. Using default strain.
Warning: gnlti136479250 has no strain. Using default strain.
Warning: gnlti136479251 has no strain. Using default strain.
Warning: gnlti136479252 has no strain. Using default strain.
Warning: gnlti136479253 has no strain. Using default strain.
Warning: gnlti136479254 has no strain. Using default strain.
Warning: gnlti136479255 has no strain. Using default strain.
Warning: gnlti136479256 has no strain. Using default strain.
Warning: gnlti136479257 has no strain. Using default strain.
Warning: gnlti136479258 has no strain. Using default strain.
Warning: gnlti136479259 has no strain. Using default strain.
Warning: gnlti136479260 has no strain. Using default strain.
Warning: gnlti136479261 has no strain. Using default strain.
Warning: gnlti136479262 has no strain. Using default strain.
Warning: gnlti136479263 has no strain. Using default strain.
Warning: gnlti136479264 has no strain. Using default strain.
Warning: gnlti136479265 has no strain. Using default strain.
Warning: gnlti136479266 has no strain. Using default strain.
Warning: gnlti136479267 has no strain. Using default strain.
Warning: gnlti136479268 has no strain. Using default strain.
Warning: gnlti136479269 has no strain. Using default strain.
Warning: gnlti136479270 has no strain. Using default strain.
Warning: gnlti136479271 has no strain. Using default strain.
Warning: gnlti136479272 has no strain. Using default strain.
Warning: gnlti136479273 has no strain. Using default strain.
Warning: gnlti136479274 has no strain. Using default strain.
Warning: gnlti136479275 has no strain. Using default strain.
Warning: gnlti136479276 has no strain. Using default strain.
Warning: gnlti136479277 has no strain. Using default strain.
Warning: gnlti136479278 has no strain. Using default strain.
Warning: gnlti136479279 has no strain. Using default strain.
Warning: gnlti136479280 has no strain. Using default strain.
Warning: gnlti136479281 has no strain. Using default strain.
Warning: gnlti136479282 has no strain. Using default strain.
Warning: gnlti136479283 has no strain. Using default strain.
Warning: gnlti136479284 has no strain. Using default strain.
Warning: gnlti136479285 has no strain. Using default strain.
Warning: gnlti136479286 has no strain. Using default strain.
Warning: gnlti136479287 has no strain. Using default strain.
Warning: gnlti136479288 has no strain. Using default strain.
Warning: gnlti136479289 has no strain. Using default strain.
Warning: gnlti136479290 has no strain. Using default strain.
Warning: gnlti136479291 has no strain. Using default strain.
Warning: gnlti136479292 has no strain. Using default strain.
Warning: gnlti136479293 has no strain. Using default strain.
Warning: gnlti136479294 has no strain. Using default strain.
Warning: gnlti136479295 has no strain. Using default strain.
Warning: gnlti136479296 has no strain. Using default strain.
Warning: gnlti136479297 has no strain. Using default strain.
Warning: gnlti136479298 has no strain. Using default strain.
Warning: gnlti136479299 has no strain. Using default strain.
Warning: gnlti136479300 has no strain. Using default strain.
Warning: gnlti136479301 has no strain. Using default strain.
Warning: gnlti136479302 has no strain. Using default strain.
Warning: gnlti136479303 has no strain. Using default strain.
Warning: gnlti136479304 has no strain. Using default strain.
Warning: gnlti136479305 has no strain. Using default strain.
Warning: gnlti136479306 has no strain. Using default strain.
Warning: gnlti136479307 has no strain. Using default strain.
Warning: gnlti136479308 has no strain. Using default strain.
Warning: gnlti136479309 has no strain. Using default strain.
Warning: gnlti136479310 has no strain. Using default strain.
Warning: gnlti136479311 has no strain. Using default strain.
Warning: gnlti136479312 has no strain. Using default strain.
Warning: gnlti136479313 has no strain. Using default strain.
Warning: gnlti136479314 has no strain. Using default strain.
Warning: gnlti136479315 has no strain. Using default strain.
Warning: gnlti136479316 has no strain. Using default strain.
Warning: gnlti136479317 has no strain. Using default strain.
Warning: gnlti136479318 has no strain. Using default strain.
Warning: gnlti136479319 has no strain. Using default strain.
Warning: gnlti136479320 has no strain. Using default strain.
Warning: gnlti136479321 has no strain. Using default strain.
Warning: gnlti136479322 has no strain. Using default strain.
Warning: gnlti136479323 has no strain. Using default strain.
Warning: gnlti136479324 has no strain. Using default strain.
Warning: gnlti136479325 has no strain. Using default strain.
Warning: gnlti136479326 has no strain. Using default strain.
Warning: gnlti136479327 has no strain. Using default strain.
Warning: gnlti136479328 has no strain. Using default strain.
Warning: gnlti136479329 has no strain. Using default strain.
Warning: gnlti136479330 has no strain. Using default strain.
Warning: gnlti136479331 has no strain. Using default strain.
Warning: gnlti136479332 has no strain. Using default strain.
Warning: gnlti136479333 has no strain. Using default strain.
Warning: gnlti136479334 has no strain. Using default strain.
Warning: gnlti136479335 has no strain. Using default strain.
Warning: gnlti136479336 has no strain. Using default strain.
Warning: gnlti136479337 has no strain. Using default strain.
Warning: gnlti136479338 has no strain. Using default strain.
Warning: gnlti136479339 has no strain. Using default strain.
Warning: gnlti136479340 has no strain. Using default strain.
Warning: gnlti136479341 has no strain. Using default strain.
Warning: gnlti136479342 has no strain. Using default strain.
Warning: gnlti136479343 has no strain. Using default strain.
Warning: gnlti136479344 has no strain. Using default strain.
Warning: gnlti136479345 has no strain. Using default strain.
Warning: gnlti136479346 has no strain. Using default strain.
Warning: gnlti136479347 has no strain. Using default strain.
Warning: gnlti136479348 has no strain. Using default strain.
Warning: gnlti136479349 has no strain. Using default strain.
Warning: gnlti136479350 has no strain. Using default strain.
Warning: gnlti136479351 has no strain. Using default strain.
Warning: gnlti136479352 has no strain. Using default strain.
Warning: gnlti136479353 has no strain. Using default strain.
Warning: gnlti136479354 has no strain. Using default strain.
Warning: gnlti136479355 has no strain. Using default strain.
Warning: gnlti136479356 has no strain. Using default strain.
Warning: gnlti136479357 has no strain. Using default strain.
Warning: gnlti136479358 has no strain. Using default strain.
Warning: gnlti136479359 has no strain. Using default strain.
Warning: gnlti136479360 has no strain. Using default strain.
Warning: gnlti136479361 has no strain. Using default strain.
Warning: gnlti136479362 has no strain. Using default strain.
Warning: gnlti136479363 has no strain. Using default strain.
Warning: gnlti136479364 has no strain. Using default strain.
Warning: gnlti136479365 has no strain. Using default strain.
Warning: gnlti136479366 has no strain. Using default strain.
Warning: gnlti136479367 has no strain. Using default strain.
Warning: gnlti136479368 has no strain. Using default strain.
Warning: gnlti136479369 has no strain. Using default strain.
Warning: gnlti136479370 has no strain. Using default strain.
Warning: gnlti136479371 has no strain. Using default strain.
Warning: gnlti136479372 has no strain. Using default strain.
Warning: gnlti136479373 has no strain. Using default strain.
Warning: gnlti136479374 has no strain. Using default strain.
Warning: gnlti136479375 has no strain. Using default strain.
Warning: gnlti136479376 has no strain. Using default strain.
Warning: gnlti136479377 has no strain. Using default strain.
Warning: gnlti136479378 has no strain. Using default strain.
Warning: gnlti136479379 has no strain. Using default strain.
Warning: gnlti136479380 has no strain. Using default strain.
Warning: gnlti136479381 has no strain. Using default strain.
Warning: gnlti136479382 has no strain. Using default strain.
Warning: gnlti136479383 has no strain. Using default strain.
Warning: gnlti136479384 has no strain. Using default strain.
Warning: gnlti136479385 has no strain. Using default strain.
Warning: gnlti136479386 has no strain. Using default strain.
Warning: gnlti136479387 has no strain. Using default strain.
Warning: gnlti136479388 has no strain. Using default strain.
Warning: gnlti136479389 has no strain. Using default strain.
Warning: gnlti136479390 has no strain. Using default strain.
Warning: gnlti136479391 has no strain. Using default strain.
Warning: gnlti136479392 has no strain. Using default strain.
Warning: gnlti136479393 has no strain. Using default strain.
Warning: gnlti136479394 has no strain. Using default strain.
Warning: gnlti136479395 has no strain. Using default strain.
Warning: gnlti136479396 has no strain. Using default strain.
Warning: gnlti136479397 has no strain. Using default strain.
Warning: gnlti136479398 has no strain. Using default strain.
Warning: gnlti136479399 has no strain. Using default strain.
Warning: gnlti136479400 has no strain. Using default strain.
Warning: gnlti136479401 has no strain. Using default strain.
Warning: gnlti136479402 has no strain. Using default strain.
Warning: gnlti136479403 has no strain. Using default strain.
Warning: gnlti136479404 has no strain. Using default strain.
Warning: gnlti136479405 has no strain. Using default strain.
Warning: gnlti136479406 has no strain. Using default strain.
Warning: gnlti136479407 has no strain. Using default strain.
Warning: gnlti136479408 has no strain. Using default strain.
Warning: gnlti136479409 has no strain. Using default strain.
Warning: gnlti136479410 has no strain. Using default strain.
Warning: gnlti136479411 has no strain. Using default strain.
Warning: gnlti136479412 has no strain. Using default strain.
Warning: gnlti136479413 has no strain. Using default strain.
Warning: gnlti136479414 has no strain. Using default strain.
Warning: gnlti136479415 has no strain. Using default strain.
Warning: gnlti136479416 has no strain. Using default strain.
Warning: gnlti136479417 has no strain. Using default strain.
Warning: gnlti136479418 has no strain. Using default strain.
Warning: gnlti136479419 has no strain. Using default strain.
Warning: gnlti136479420 has no strain. Using default strain.
Warning: gnlti136479421 has no strain. Using default strain.
Warning: gnlti136479422 has no strain. Using default strain.
Warning: gnlti136479423 has no strain. Using default strain.
Warning: gnlti136479424 has no strain. Using default strain.
Warning: gnlti136479425 has no strain. Using default strain.
Warning: gnlti136479426 has no strain. Using default strain.
Warning: gnlti136479427 has no strain. Using default strain.
Warning: gnlti136479428 has no strain. Using default strain.
Warning: gnlti136479429 has no strain. Using default strain.
Warning: gnlti136479430 has no strain. Using default strain.
Warning: gnlti136479431 has no strain. Using default strain.
Warning: gnlti136479432 has no strain. Using default strain.
Warning: gnlti136479433 has no strain. Using default strain.
Warning: gnlti136479434 has no strain. Using default strain.
Warning: gnlti136479435 has no strain. Using default strain.
Warning: gnlti136479436 has no strain. Using default strain.
Warning: gnlti136479437 has no strain. Using default strain.
Warning: gnlti136479438 has no strain. Using default strain.
Warning: gnlti136479439 has no strain. Using default strain.
Warning: gnlti136479440 has no strain. Using default strain.
Warning: gnlti136479441 has no strain. Using default strain.
Warning: gnlti136479442 has no strain. Using default strain.
Warning: gnlti136479443 has no strain. Using default strain.
Warning: gnlti136479444 has no strain. Using default strain.
Warning: gnlti136479445 has no strain. Using default strain.
Warning: gnlti136479446 has no strain. Using default strain.
Warning: gnlti136479447 has no strain. Using default strain.
Warning: gnlti136479448 has no strain. Using default strain.
Warning: gnlti136479449 has no strain. Using default strain.
Warning: gnlti136479450 has no strain. Using default strain.
Warning: gnlti136479451 has no strain. Using default strain.
Warning: gnlti136479452 has no strain. Using default strain.
Warning: gnlti136479453 has no strain. Using default strain.
Warning: gnlti136479454 has no strain. Using default strain.
Warning: gnlti136479455 has no strain. Using default strain.
Warning: gnlti136479456 has no strain. Using default strain.
Warning: gnlti136479457 has no strain. Using default strain.
Warning: gnlti136479458 has no strain. Using default strain.
Warning: gnlti136479459 has no strain. Using default strain.
Warning: gnlti136479460 has no strain. Using default strain.
Warning: gnlti136479461 has no strain. Using default strain.
Warning: gnlti136479462 has no strain. Using default strain.
Warning: gnlti136479463 has no strain. Using default strain.
Warning: gnlti136479464 has no strain. Using default strain.
Warning: gnlti136479465 has no strain. Using default strain.
Warning: gnlti136479466 has no strain. Using default strain.
Warning: gnlti136479467 has no strain. Using default strain.
Warning: gnlti136479468 has no strain. Using default strain.
Warning: gnlti136479469 has no strain. Using default strain.
Warning: gnlti136479470 has no strain. Using default strain.
Warning: gnlti136479471 has no strain. Using default strain.
Warning: gnlti136479472 has no strain. Using default strain.
Warning: gnlti136479473 has no strain. Using default strain.
Warning: gnlti136479474 has no strain. Using default strain.
Warning: gnlti136479475 has no strain. Using default strain.
Warning: gnlti136479476 has no strain. Using default strain.
Warning: gnlti136479477 has no strain. Using default strain.
Warning: gnlti136479478 has no strain. Using default strain.
Warning: gnlti136479479 has no strain. Using default strain.
Warning: gnlti136479480 has no strain. Using default strain.
Warning: gnlti136479481 has no strain. Using default strain.
Warning: gnlti136479482 has no strain. Using default strain.
Warning: gnlti136479483 has no strain. Using default strain.
Warning: gnlti136479484 has no strain. Using default strain.
Warning: gnlti136479485 has no strain. Using default strain.
Warning: gnlti136479486 has no strain. Using default strain.
Warning: gnlti136479487 has no strain. Using default strain.
Warning: gnlti136479488 has no strain. Using default strain.
Warning: gnlti136479489 has no strain. Using default strain.
Warning: gnlti136479490 has no strain. Using default strain.
Warning: gnlti136479491 has no strain. Using default strain.
Warning: gnlti136479492 has no strain. Using default strain.
Warning: gnlti136479493 has no strain. Using default strain.
Warning: gnlti136479494 has no strain. Using default strain.
Warning: gnlti136479495 has no strain. Using default strain.
Warning: gnlti136479496 has no strain. Using default strain.
Warning: gnlti136479497 has no strain. Using default strain.
Warning: gnlti136479498 has no strain. Using default strain.
Warning: gnlti136479499 has no strain. Using default strain.
Warning: gnlti136479500 has no strain. Using default strain.
Warning: gnlti136479501 has no strain. Using default strain.
Warning: gnlti136479502 has no strain. Using default strain.
Warning: gnlti136479503 has no strain. Using default strain.
Warning: gnlti136479504 has no strain. Using default strain.
Warning: gnlti136479505 has no strain. Using default strain.
Warning: gnlti136479506 has no strain. Using default strain.
Warning: gnlti136479507 has no strain. Using default strain.
Warning: gnlti136479508 has no strain. Using default strain.
Warning: gnlti136479509 has no strain. Using default strain.
Warning: gnlti136479510 has no strain. Using default strain.
Warning: gnlti136479511 has no strain. Using default strain.
Warning: gnlti136479512 has no strain. Using default strain.
Warning: gnlti136479513 has no strain. Using default strain.
Warning: gnlti136479514 has no strain. Using default strain.
Warning: gnlti136479515 has no strain. Using default strain.
Warning: gnlti136479516 has no strain. Using default strain.
Warning: gnlti136479517 has no strain. Using default strain.
Warning: gnlti136479518 has no strain. Using default strain.
Warning: gnlti136479519 has no strain. Using default strain.
Warning: gnlti136479520 has no strain. Using default strain.
Warning: gnlti136479521 has no strain. Using default strain.
Warning: gnlti136479522 has no strain. Using default strain.
Warning: gnlti136479523 has no strain. Using default strain.
Warning: gnlti136479524 has no strain. Using default strain.
Warning: gnlti136479525 has no strain. Using default strain.
Warning: gnlti136479526 has no strain. Using default strain.
Warning: gnlti136479527 has no strain. Using default strain.
Warning: gnlti136479528 has no strain. Using default strain.
Warning: gnlti136479529 has no strain. Using default strain.
Warning: gnlti136479530 has no strain. Using default strain.
Warning: gnlti136479531 has no strain. Using default strain.
Warning: gnlti136479532 has no strain. Using default strain.
Warning: gnlti136479533 has no strain. Using default strain.
Warning: gnlti136479534 has no strain. Using default strain.
Warning: gnlti136479535 has no strain. Using default strain.
Warning: gnlti136479536 has no strain. Using default strain.
Warning: gnlti136479537 has no strain. Using default strain.
Warning: gnlti136479538 has no strain. Using default strain.
Warning: gnlti136479539 has no strain. Using default strain.
Warning: gnlti136479540 has no strain. Using default strain.
Warning: gnlti136479541 has no strain. Using default strain.
Warning: gnlti136479542 has no strain. Using default strain.
Warning: gnlti136479543 has no strain. Using default strain.
Warning: gnlti136479544 has no strain. Using default strain.
Warning: gnlti136479545 has no strain. Using default strain.
Warning: gnlti136479546 has no strain. Using default strain.
Warning: gnlti136479547 has no strain. Using default strain.
Warning: gnlti136479548 has no strain. Using default strain.
Warning: gnlti136479549 has no strain. Using default strain.
Warning: gnlti136479550 has no strain. Using default strain.
Warning: gnlti136479551 has no strain. Using default strain.
Warning: gnlti136479552 has no strain. Using default strain.
Warning: gnlti136479553 has no strain. Using default strain.
Warning: gnlti136479554 has no strain. Using default strain.
Warning: gnlti136479555 has no strain. Using default strain.
Warning: gnlti136479556 has no strain. Using default strain.
Warning: gnlti136479557 has no strain. Using default strain.
Warning: gnlti136479558 has no strain. Using default strain.
Warning: gnlti136479559 has no strain. Using default strain.
Warning: gnlti136479560 has no strain. Using default strain.
Warning: gnlti136479561 has no strain. Using default strain.
Warning: gnlti136479562 has no strain. Using default strain.
Warning: gnlti136479563 has no strain. Using default strain.
Warning: gnlti136479564 has no strain. Using default strain.
Warning: gnlti136479565 has no strain. Using default strain.
Warning: gnlti136479566 has no strain. Using default strain.
Warning: gnlti136479567 has no strain. Using default strain.
Warning: gnlti136479568 has no strain. Using default strain.
Warning: gnlti136479569 has no strain. Using default strain.
Warning: gnlti136479570 has no strain. Using default strain.
Warning: gnlti136479571 has no strain. Using default strain.
Warning: gnlti136479572 has no strain. Using default strain.
Warning: gnlti136479573 has no strain. Using default strain.
Warning: gnlti136479574 has no strain. Using default strain.
Warning: gnlti136479575 has no strain. Using default strain.
Warning: gnlti136479576 has no strain. Using default strain.
Warning: gnlti136479577 has no strain. Using default strain.
Warning: gnlti136479578 has no strain. Using default strain.
Warning: gnlti136479579 has no strain. Using default strain.
Warning: gnlti136479580 has no strain. Using default strain.
Warning: gnlti136479581 has no strain. Using default strain.
Warning: gnlti136479582 has no strain. Using default strain.
Warning: gnlti136479583 has no strain. Using default strain.
Warning: gnlti136479584 has no strain. Using default strain.
Warning: gnlti136479585 has no strain. Using default strain.
Warning: gnlti136479586 has no strain. Using default strain.
Warning: gnlti136479587 has no strain. Using default strain.
Warning: gnlti136479588 has no strain. Using default strain.
Warning: gnlti136479589 has no strain. Using default strain.
Warning: gnlti136479590 has no strain. Using default strain.
Warning: gnlti136479591 has no strain. Using default strain.
Warning: gnlti136479592 has no strain. Using default strain.
Warning: gnlti136479593 has no strain. Using default strain.
Warning: gnlti136479594 has no strain. Using default strain.
Warning: gnlti136479595 has no strain. Using default strain.
Warning: gnlti136479596 has no strain. Using default strain.
Warning: gnlti136479597 has no strain. Using default strain.
Warning: gnlti136479598 has no strain. Using default strain.
Warning: gnlti136479599 has no strain. Using default strain.
Warning: gnlti136479600 has no strain. Using default strain.
Warning: gnlti136479601 has no strain. Using default strain.
Warning: gnlti136479602 has no strain. Using default strain.
Warning: gnlti136479603 has no strain. Using default strain.
Warning: gnlti136479604 has no strain. Using default strain.
Warning: gnlti136479605 has no strain. Using default strain.
Warning: gnlti136479606 has no strain. Using default strain.
Warning: gnlti136479607 has no strain. Using default strain.
Warning: gnlti136479608 has no strain. Using default strain.
Warning: gnlti136479609 has no strain. Using default strain.
Warning: gnlti136479610 has no strain. Using default strain.
Warning: gnlti136479611 has no strain. Using default strain.
Warning: gnlti136479612 has no strain. Using default strain.
Warning: gnlti136479613 has no strain. Using default strain.
Warning: gnlti136479614 has no strain. Using default strain.
Warning: gnlti136479615 has no strain. Using default strain.
Warning: gnlti136479616 has no strain. Using default strain.
Warning: gnlti136479617 has no strain. Using default strain.
Warning: gnlti136479618 has no strain. Using default strain.
Warning: gnlti136479619 has no strain. Using default strain.
Warning: gnlti136479620 has no strain. Using default strain.
Warning: gnlti136479621 has no strain. Using default strain.
Warning: gnlti136479622 has no strain. Using default strain.
Warning: gnlti136479623 has no strain. Using default strain.
Warning: gnlti136479624 has no strain. Using default strain.
Warning: gnlti136479625 has no strain. Using default strain.
Warning: gnlti136479626 has no strain. Using default strain.
Warning: gnlti136479627 has no strain. Using default strain.
Warning: gnlti136479628 has no strain. Using default strain.
Warning: gnlti136479629 has no strain. Using default strain.
Warning: gnlti136479630 has no strain. Using default strain.
Warning: gnlti136479631 has no strain. Using default strain.
Warning: gnlti136479632 has no strain. Using default strain.
Warning: gnlti136479633 has no strain. Using default strain.
Warning: gnlti136479634 has no strain. Using default strain.
Warning: gnlti136479635 has no strain. Using default strain.
Warning: gnlti136479636 has no strain. Using default strain.
Warning: gnlti136479637 has no strain. Using default strain.
Warning: gnlti136479638 has no strain. Using default strain.
Warning: gnlti136479639 has no strain. Using default strain.
Warning: gnlti136479640 has no strain. Using default strain.
Warning: gnlti136479641 has no strain. Using default strain.
Warning: gnlti136479642 has no strain. Using default strain.
Warning: gnlti136479643 has no strain. Using default strain.
Warning: gnlti136479644 has no strain. Using default strain.
Warning: gnlti136479645 has no strain. Using default strain.
Warning: gnlti136479646 has no strain. Using default strain.
Warning: gnlti136479647 has no strain. Using default strain.
Warning: gnlti136479648 has no strain. Using default strain.
Warning: gnlti136479649 has no strain. Using default strain.
Warning: gnlti136479650 has no strain. Using default strain.
Warning: gnlti136479651 has no strain. Using default strain.
Warning: gnlti136479652 has no strain. Using default strain.
Warning: gnlti136479653 has no strain. Using default strain.
Warning: gnlti136479654 has no strain. Using default strain.
Warning: gnlti136479655 has no strain. Using default strain.
Warning: gnlti136479656 has no strain. Using default strain.
Warning: gnlti136479657 has no strain. Using default strain.
Warning: gnlti136479658 has no strain. Using default strain.
Warning: gnlti136479659 has no strain. Using default strain.
Warning: gnlti136479660 has no strain. Using default strain.
Warning: gnlti136479661 has no strain. Using default strain.
Warning: gnlti136479662 has no strain. Using default strain.
Warning: gnlti136479663 has no strain. Using default strain.
Warning: gnlti136479664 has no strain. Using default strain.
Warning: gnlti136479665 has no strain. Using default strain.
Warning: gnlti136479666 has no strain. Using default strain.
Warning: gnlti136479667 has no strain. Using default strain.
Warning: gnlti136479668 has no strain. Using default strain.
Warning: gnlti136479669 has no strain. Using default strain.
Warning: gnlti136479670 has no strain. Using default strain.
Warning: gnlti136479671 has no strain. Using default strain.
Warning: gnlti136479672 has no strain. Using default strain.
Warning: gnlti136479673 has no strain. Using default strain.
Warning: gnlti136479674 has no strain. Using default strain.
Warning: gnlti136479675 has no strain. Using default strain.
Warning: gnlti136479676 has no strain. Using default strain.
Warning: gnlti136479677 has no strain. Using default strain.
Warning: gnlti136479678 has no strain. Using default strain.
Warning: gnlti136479679 has no strain. Using default strain.
Warning: gnlti136479680 has no strain. Using default strain.
Warning: gnlti136479681 has no strain. Using default strain.
Warning: gnlti136479682 has no strain. Using default strain.
Warning: gnlti136479683 has no strain. Using default strain.
Warning: gnlti136479684 has no strain. Using default strain.
Warning: gnlti136479685 has no strain. Using default strain.
Warning: gnlti136479686 has no strain. Using default strain.
Warning: gnlti136479687 has no strain. Using default strain.
Warning: gnlti136479688 has no strain. Using default strain.
Warning: gnlti136479689 has no strain. Using default strain.
Warning: gnlti136479690 has no strain. Using default strain.
Warning: gnlti136479691 has no strain. Using default strain.
Warning: gnlti136479692 has no strain. Using default strain.
Warning: gnlti136479693 has no strain. Using default strain.
Warning: gnlti136479694 has no strain. Using default strain.
Warning: gnlti136479695 has no strain. Using default strain.
Warning: gnlti136479696 has no strain. Using default strain.
Warning: gnlti136479697 has no strain. Using default strain.
Warning: gnlti136479698 has no strain. Using default strain.
Warning: gnlti136479699 has no strain. Using default strain.
Warning: gnlti136479700 has no strain. Using default strain.
Warning: gnlti136479701 has no strain. Using default strain.
Warning: gnlti136479702 has no strain. Using default strain.
Warning: gnlti136479703 has no strain. Using default strain.
Warning: gnlti136479704 has no strain. Using default strain.
Warning: gnlti136479705 has no strain. Using default strain.
Warning: gnlti136479706 has no strain. Using default strain.
Warning: gnlti136479707 has no strain. Using default strain.
Warning: gnlti136479708 has no strain. Using default strain.
Warning: gnlti136479709 has no strain. Using default strain.
Warning: gnlti136479710 has no strain. Using default strain.
Warning: gnlti136479711 has no strain. Using default strain.
Warning: gnlti136479712 has no strain. Using default strain.
Warning: gnlti136479713 has no strain. Using default strain.
Warning: gnlti136479714 has no strain. Using default strain.
Warning: gnlti136479715 has no strain. Using default strain.
Warning: gnlti136479716 has no strain. Using default strain.
Warning: gnlti136479717 has no strain. Using default strain.
Warning: gnlti136479718 has no strain. Using default strain.
Warning: gnlti136479719 has no strain. Using default strain.
Warning: gnlti136479720 has no strain. Using default strain.
Warning: gnlti136479721 has no strain. Using default strain.
Warning: gnlti136479722 has no strain. Using default strain.
Warning: gnlti136479723 has no strain. Using default strain.
Warning: gnlti136479724 has no strain. Using default strain.
Warning: gnlti136479725 has no strain. Using default strain.
Warning: gnlti136479726 has no strain. Using default strain.
Warning: gnlti136479727 has no strain. Using default strain.
Warning: gnlti136479728 has no strain. Using default strain.
Warning: gnlti136479729 has no strain. Using default strain.
Warning: gnlti136479730 has no strain. Using default strain.
Warning: gnlti136479731 has no strain. Using default strain.
Warning: gnlti136479732 has no strain. Using default strain.
Warning: gnlti136479733 has no strain. Using default strain.
Warning: gnlti136479734 has no strain. Using default strain.
Warning: gnlti136479735 has no strain. Using default strain.
Warning: gnlti136479736 has no strain. Using default strain.
Warning: gnlti136479737 has no strain. Using default strain.
Warning: gnlti136479738 has no strain. Using default strain.
Warning: gnlti136479739 has no strain. Using default strain.
Warning: gnlti136479740 has no strain. Using default strain.
Warning: gnlti136479741 has no strain. Using default strain.
Warning: gnlti136479742 has no strain. Using default strain.
Warning: gnlti136479743 has no strain. Using default strain.
Warning: gnlti136479744 has no strain. Using default strain.
Warning: gnlti136479745 has no strain. Using default strain.
Warning: gnlti136479746 has no strain. Using default strain.
Warning: gnlti136479747 has no strain. Using default strain.
Warning: gnlti136479748 has no strain. Using default strain.
Warning: gnlti136479749 has no strain. Using default strain.
Warning: gnlti136479750 has no strain. Using default strain.
Warning: gnlti136479751 has no strain. Using default strain.
Warning: gnlti136479752 has no strain. Using default strain.
Warning: gnlti136479753 has no strain. Using default strain.
Warning: gnlti136479754 has no strain. Using default strain.
Warning: gnlti136479755 has no strain. Using default strain.
Warning: gnlti136479756 has no strain. Using default strain.
Warning: gnlti136479757 has no strain. Using default strain.
Warning: gnlti136479758 has no strain. Using default strain.
Warning: gnlti136479759 has no strain. Using default strain.
Warning: gnlti136479760 has no strain. Using default strain.
Warning: gnlti136479761 has no strain. Using default strain.
Warning: gnlti136479762 has no strain. Using default strain.
Warning: gnlti136479763 has no strain. Using default strain.
Warning: gnlti136479764 has no strain. Using default strain.
Warning: gnlti136479765 has no strain. Using default strain.
Warning: gnlti136479766 has no strain. Using default strain.
Warning: gnlti136479767 has no strain. Using default strain.
Warning: gnlti136479768 has no strain. Using default strain.
Warning: gnlti136479769 has no strain. Using default strain.
Warning: gnlti136479770 has no strain. Using default strain.
Warning: gnlti136479771 has no strain. Using default strain.
Warning: gnlti136479772 has no strain. Using default strain.
Warning: gnlti136479773 has no strain. Using default strain.
Warning: gnlti136479774 has no strain. Using default strain.
Warning: gnlti136479775 has no strain. Using default strain.
Warning: gnlti136479776 has no strain. Using default strain.
Warning: gnlti136479777 has no strain. Using default strain.
Warning: gnlti136479778 has no strain. Using default strain.
Warning: gnlti136479779 has no strain. Using default strain.
Warning: gnlti136479780 has no strain. Using default strain.
Warning: gnlti136479781 has no strain. Using default strain.
Warning: gnlti136479782 has no strain. Using default strain.
Warning: gnlti136479783 has no strain. Using default strain.
Warning: gnlti136479784 has no strain. Using default strain.
Warning: gnlti136479785 has no strain. Using default strain.
Warning: gnlti136479786 has no strain. Using default strain.
Warning: gnlti136479787 has no strain. Using default strain.
Warning: gnlti136479788 has no strain. Using default strain.
Warning: gnlti136479789 has no strain. Using default strain.
Warning: gnlti136479790 has no strain. Using default strain.
Warning: gnlti136479791 has no strain. Using default strain.
Warning: gnlti136479792 has no strain. Using default strain.
Warning: gnlti136479793 has no strain. Using default strain.
Warning: gnlti136479794 has no strain. Using default strain.
Warning: gnlti136479795 has no strain. Using default strain.
Warning: gnlti136479796 has no strain. Using default strain.
Warning: gnlti136479797 has no strain. Using default strain.
Warning: gnlti136479798 has no strain. Using default strain.
Warning: gnlti136479799 has no strain. Using default strain.
Warning: gnlti136479800 has no strain. Using default strain.
Warning: gnlti136479801 has no strain. Using default strain.
Warning: gnlti136479802 has no strain. Using default strain.
Warning: gnlti136479803 has no strain. Using default strain.
Warning: gnlti136479804 has no strain. Using default strain.
Warning: gnlti136479805 has no strain. Using default strain.
Warning: gnlti136479806 has no strain. Using default strain.
Warning: gnlti136479807 has no strain. Using default strain.
Warning: gnlti136479808 has no strain. Using default strain.
Warning: gnlti136479809 has no strain. Using default strain.
Warning: gnlti136479810 has no strain. Using default strain.
Warning: gnlti136479811 has no strain. Using default strain.
Warning: gnlti136479812 has no strain. Using default strain.
Warning: gnlti136479813 has no strain. Using default strain.
Warning: gnlti136479814 has no strain. Using default strain.
Warning: gnlti136479815 has no strain. Using default strain.
Warning: gnlti136479816 has no strain. Using default strain.
Warning: gnlti136479817 has no strain. Using default strain.
Warning: gnlti136479818 has no strain. Using default strain.
Warning: gnlti136479819 has no strain. Using default strain.
Warning: gnlti136479820 has no strain. Using default strain.
Warning: gnlti136479821 has no strain. Using default strain.
Warning: gnlti136479822 has no strain. Using default strain.
Warning: gnlti136479823 has no strain. Using default strain.
Warning: gnlti136479824 has no strain. Using default strain.
Warning: gnlti136479825 has no strain. Using default strain.
Warning: gnlti136479826 has no strain. Using default strain.
Warning: gnlti136479827 has no strain. Using default strain.
Warning: gnlti136479828 has no strain. Using default strain.
Warning: gnlti136479829 has no strain. Using default strain.
Warning: gnlti136479830 has no strain. Using default strain.
Warning: gnlti136479831 has no strain. Using default strain.
Warning: gnlti136479832 has no strain. Using default strain.
Warning: gnlti136479833 has no strain. Using default strain.
Warning: gnlti136479834 has no strain. Using default strain.
Warning: gnlti136479835 has no strain. Using default strain.
Warning: gnlti136479836 has no strain. Using default strain.
Warning: gnlti136479837 has no strain. Using default strain.
Warning: gnlti136479838 has no strain. Using default strain.
Warning: gnlti136479839 has no strain. Using default strain.
Warning: gnlti136479840 has no strain. Using default strain.
Warning: gnlti136479841 has no strain. Using default strain.
Warning: gnlti136479842 has no strain. Using default strain.
Warning: gnlti136479843 has no strain. Using default strain.
Warning: gnlti136479844 has no strain. Using default strain.
Warning: gnlti136479845 has no strain. Using default strain.
Warning: gnlti136479846 has no strain. Using default strain.
Warning: gnlti136479847 has no strain. Using default strain.
Warning: gnlti136479848 has no strain. Using default strain.
Warning: gnlti136479849 has no strain. Using default strain.
Warning: gnlti136479850 has no strain. Using default strain.
Warning: gnlti136479851 has no strain. Using default strain.
Warning: gnlti136479852 has no strain. Using default strain.
Warning: gnlti136479853 has no strain. Using default strain.
Warning: gnlti136479854 has no strain. Using default strain.
Warning: gnlti136479855 has no strain. Using default strain.
Warning: gnlti136479856 has no strain. Using default strain.
Warning: gnlti136479857 has no strain. Using default strain.
Warning: gnlti136479858 has no strain. Using default strain.
Warning: gnlti136479859 has no strain. Using default strain.
Warning: gnlti136479860 has no strain. Using default strain.
Warning: gnlti136479861 has no strain. Using default strain.
Warning: gnlti136479862 has no strain. Using default strain.
Warning: gnlti136479863 has no strain. Using default strain.
Warning: gnlti136479864 has no strain. Using default strain.
Warning: gnlti136479865 has no strain. Using default strain.
Warning: gnlti136479866 has no strain. Using default strain.
Warning: gnlti136479867 has no strain. Using default strain.
Warning: gnlti136479868 has no strain. Using default strain.
Warning: gnlti136479869 has no strain. Using default strain.
Warning: gnlti136479870 has no strain. Using default strain.
Warning: gnlti136479871 has no strain. Using default strain.
Warning: gnlti136479872 has no strain. Using default strain.
Warning: gnlti136479873 has no strain. Using default strain.
Warning: gnlti136479874 has no strain. Using default strain.
Warning: gnlti136479875 has no strain. Using default strain.
Warning: gnlti136479876 has no strain. Using default strain.
Warning: gnlti136479877 has no strain. Using default strain.
Warning: gnlti136479878 has no strain. Using default strain.
Warning: gnlti136479879 has no strain. Using default strain.
Warning: gnlti136479880 has no strain. Using default strain.
Warning: gnlti136479881 has no strain. Using default strain.
Warning: gnlti136479882 has no strain. Using default strain.
Warning: gnlti136479883 has no strain. Using default strain.
Warning: gnlti136479884 has no strain. Using default strain.
Warning: gnlti136479885 has no strain. Using default strain.
Warning: gnlti136479886 has no strain. Using default strain.
Warning: gnlti136479887 has no strain. Using default strain.
Warning: gnlti136479888 has no strain. Using default strain.
Warning: gnlti136479889 has no strain. Using default strain.


Starting minimum left vector clip ... done.
Pool has 2396 reads .
Checking reads for trace data:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
No SCF data present in any read, automatic contig editing is now switched off.
2396 reads with valid data for assembly.

For the reads that are neither backbones nor rails:
- 547 reads have not enough good bases for assembly.
- 1849 reads used for assembly.
- 0 reads have no real quality (see miralog.noqualities).
- mean length of good parts of used reads: 396
Localtime: Thu Jul 15 12:00:00 2010

Generated 2396 unique template ids for 2396 valid reads.
No useful template information found, template routines will not be used.
Localtime: Thu Jul 15 12:00:00 2010

Generated 0 unique strain ids for 2396 reads.
Tagging poly A/T stretches at ends of reads.

Localtime: Thu Jul 15 12:00:00 2010


Searching for possible overlaps:
Localtime: Thu Jul 15 12:00:00 2010
We will get 1 partitions.
Progressend: 4792
Now running partitioned skimmer with 1 partitions:

Working on partition 1/1
Will contain read IDs 0 to 2395
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
Total megahubs: 0

Skim summary:
	accepted: 4515
	possible: 554148
	permbans: 0

Hits chosen: 3209

Localtime: Thu Jul 15 12:00:00 2010

Pre-assembly alignment search for read extension and / or vector clipping:
Making alignments.
Localtime: Thu Jul 15 12:00:00 2010

Aligning possible forward matches:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
Localtime: Thu Jul 15 12:00:00 2010

Aligning possible complement matches:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
Localtime: Thu Jul 15 12:00:00 2010

Calculating possible vector leftovers ... done.

Loading confirmed overlaps from disk (will need approximately 1 M.):
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 

Sorting confirmed overlaps (this may take a while) ... done.

Generating clusters:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 

Pre-assembly vector clipping

Performing vector clipping ... done.
Pool has 2396 reads .
Checking reads for trace data:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
No SCF data present in any read, automatic contig editing is now switched off.
2396 reads with valid data for assembly.

For the reads that are neither backbones nor rails:
- 550 reads have not enough good bases for assembly.
- 1846 reads used for assembly.
- 0 reads have no real quality (see miralog.noqualities).
- mean length of good parts of used reads: 395
Localtime: Thu Jul 15 12:00:00 2010

Generated 2396 unique template ids for 2396 valid reads.
No useful template information found, template routines will not be used.
Localtime: Thu Jul 15 12:00:00 2010

Generated 0 unique strain ids for 2396 reads.
Tagging poly A/T stretches at ends of reads.

Localtime: Thu Jul 15 12:00:00 2010


Searching for possible overlaps:
Localtime: Thu Jul 15 12:00:00 2010
We will get 1 partitions.
Progressend: 4792
Now running partitioned skimmer with 1 partitions:

Working on partition 1/1
Will contain read IDs 0 to 2395
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
Total megahubs: 0

Skim summary:
	accepted: 3421
	possible: 552590
	permbans: 0

Hits chosen: 2507

Localtime: Thu Jul 15 12:00:00 2010



Pass: 1
Making alignments.
Localtime: Thu Jul 15 12:00:00 2010

Aligning possible forward matches:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
Localtime: Thu Jul 15 12:00:00 2010

Aligning possible complement matches:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
Localtime: Thu Jul 15 12:00:00 2010

Calculating possible vector leftovers ... done.

Loading confirmed overlaps from disk (will need approximately 1 M.):
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 

Sorting confirmed overlaps (this may take a while) ... done.

Generating clusters:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 

Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1846
+[1] +++++a
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1
Contig length: 496
Avg. contig coverage: 4.63
Consensus contains:	A: 93	C: 139	G: 109	T: 125	N: 0
			IUPAC: 29	Funny: 0	*: 1

Num reads: 6
Avg. read length: 383
Reads contain 2286 bases, 1 Ns and 14 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 3 Strong RMB
 - 0 Weak RMB
 - 0 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering tags to readpool.

The previously assembled contig had grave misassemblies, rebuilding contig 1 now.
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1846
+[1] ppp++ppaaa
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1
Contig length: 509
Avg. contig coverage: 2.55
Consensus contains:	A: 91	C: 147	G: 115	T: 133	N: 0
			IUPAC: 23	Funny: 0	*: 0

Num reads: 3
Avg. read length: 434
Reads contain 1299 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 2
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1843
+[1] ++++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 2
Contig length: 494
Avg. contig coverage: 4.44
Consensus contains:	A: 134	C: 125	G: 114	T: 106	N: 0
			IUPAC: 11	Funny: 0	*: 4

Num reads: 5
Avg. read length: 438
Reads contain 2181 bases, 2 Ns and 11 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 1 Strong RMB
 - 0 Weak RMB
 - 0 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering tags to readpool.

The previously assembled contig had grave misassemblies, rebuilding contig 2 now.
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1843
+[1] ppp+ppp
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 2
Contig length: 437
Avg. contig coverage: 1.89
Consensus contains:	A: 126	C: 112	G: 94	T: 98	N: 0
			IUPAC: 4	Funny: 0	*: 3

Num reads: 2
Avg. read length: 414
Reads contain 823 bases, 2 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 3
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1841
+[1] ++++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 3
Contig length: 611
Avg. contig coverage: 3.53
Consensus contains:	A: 145	C: 129	G: 156	T: 158	N: 0
			IUPAC: 21	Funny: 0	*: 2

Num reads: 5
Avg. read length: 432
Reads contain 2153 bases, 1 Ns and 7 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 4
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1836
+[1] ++++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 4
Contig length: 912
Avg. contig coverage: 2.7
Consensus contains:	A: 255	C: 243	G: 180	T: 220	N: 0
			IUPAC: 11	Funny: 0	*: 3

Num reads: 5
Avg. read length: 493
Reads contain 2456 bases, 2 Ns and 10 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 4 Strong RMB
 - 0 Weak RMB
 - 0 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering tags to readpool.

The previously assembled contig had grave misassemblies, rebuilding contig 4 now.
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1836
+[1] +pp+p
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 4
Contig length: 842
Avg. contig coverage: 1.68
Consensus contains:	A: 222	C: 235	G: 178	T: 205	N: 0
			IUPAC: 0	Funny: 0	*: 2

Num reads: 3
Avg. read length: 471
Reads contain 1412 bases, 1 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 5
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1833
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 5
Contig length: 544
Avg. contig coverage: 1.92
Consensus contains:	A: 177	C: 134	G: 100	T: 133	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 522
Reads contain 1044 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 6
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1831
+[1] +++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 6
Contig length: 382
Avg. contig coverage: 3.77
Consensus contains:	A: 125	C: 75	G: 114	T: 68	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 4
Avg. read length: 360
Reads contain 1442 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 7
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1827
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 7
Contig length: 563
Avg. contig coverage: 2.94
Consensus contains:	A: 168	C: 112	G: 146	T: 136	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 3
Avg. read length: 553
Reads contain 1653 bases, 5 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 8
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1824
+[1] ++a+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 8
Contig length: 509
Avg. contig coverage: 3.62
Consensus contains:	A: 132	C: 128	G: 116	T: 119	N: 0
			IUPAC: 7	Funny: 0	*: 7

Num reads: 4
Avg. read length: 461
Reads contain 1822 bases, 1 Ns and 22 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 9
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1820
+[1] +a+++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 9
Contig length: 701
Avg. contig coverage: 3.29
Consensus contains:	A: 153	C: 151	G: 193	T: 163	N: 0
			IUPAC: 38	Funny: 0	*: 3

Num reads: 5
Avg. read length: 461
Reads contain 2292 bases, 0 Ns and 17 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 10
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1815
+[1] +++++++a
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 10
Contig length: 682
Avg. contig coverage: 5.05
Consensus contains:	A: 171	C: 154	G: 188	T: 147	N: 0
			IUPAC: 17	Funny: 0	*: 5

Num reads: 8
Avg. read length: 431
Reads contain 3424 bases, 3 Ns and 22 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 11
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1807
+[1] +++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 11
Contig length: 638
Avg. contig coverage: 2.57
Consensus contains:	A: 169	C: 179	G: 122	T: 163	N: 0
			IUPAC: 5	Funny: 0	*: 0

Num reads: 4
Avg. read length: 410
Reads contain 1641 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 12
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1803
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 12
Contig length: 589
Avg. contig coverage: 2.68
Consensus contains:	A: 128	C: 189	G: 110	T: 162	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 3
Avg. read length: 526
Reads contain 1579 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 13
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1800
+[1] ++r
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 13
Contig length: 580
Avg. contig coverage: 2.61
Consensus contains:	A: 134	C: 144	G: 158	T: 117	N: 0
			IUPAC: 25	Funny: 0	*: 2

Num reads: 3
Avg. read length: 506
Reads contain 1512 bases, 1 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 14
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1797
+[1] +++++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 14
Contig length: 559
Avg. contig coverage: 4.16
Consensus contains:	A: 124	C: 131	G: 130	T: 144	N: 0
			IUPAC: 13	Funny: 0	*: 17

Num reads: 6
Avg. read length: 387
Reads contain 2254 bases, 1 Ns and 72 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 2 Strong RMB
 - 0 Weak RMB
 - 0 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering tags to readpool.

The previously assembled contig had grave misassemblies, rebuilding contig 14 now.
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1797
+[1] +pp
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 14
Contig length: 423
Avg. contig coverage: 1.89
Consensus contains:	A: 105	C: 96	G: 98	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 401
Reads contain 800 bases, 1 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 15
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1795
+[1] +++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 15
Contig length: 422
Avg. contig coverage: 3.53
Consensus contains:	A: 113	C: 73	G: 91	T: 129	N: 0
			IUPAC: 15	Funny: 0	*: 1

Num reads: 4
Avg. read length: 372
Reads contain 1485 bases, 0 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 16
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1791
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 16
Contig length: 602
Avg. contig coverage: 2.57
Consensus contains:	A: 155	C: 151	G: 135	T: 161	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 3
Avg. read length: 517
Reads contain 1551 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 17
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1788
+[1] ++a
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 17
Contig length: 542
Avg. contig coverage: 2.52
Consensus contains:	A: 143	C: 133	G: 137	T: 125	N: 0
			IUPAC: 1	Funny: 0	*: 3

Num reads: 3
Avg. read length: 456
Reads contain 1360 bases, 1 Ns and 8 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 18
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1785
+[1] +++a+++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 18
Contig length: 1008
Avg. contig coverage: 3.1
Consensus contains:	A: 220	C: 200	G: 239	T: 274	N: 0
			IUPAC: 70	Funny: 0	*: 5

Num reads: 7
Avg. read length: 446
Reads contain 3107 bases, 0 Ns and 18 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 1 Strong RMB
 - 0 Weak RMB
 - 0 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering tags to readpool.

The previously assembled contig had grave misassemblies, rebuilding contig 18 now.
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1785
+[1] pp+++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 18
Contig length: 631
Avg. contig coverage: 2.89
Consensus contains:	A: 127	C: 149	G: 165	T: 150	N: 0
			IUPAC: 35	Funny: 0	*: 5

Num reads: 4
Avg. read length: 456
Reads contain 1812 bases, 0 Ns and 12 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 19
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1781
+[1] +++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 19
Contig length: 412
Avg. contig coverage: 3.59
Consensus contains:	A: 107	C: 91	G: 86	T: 114	N: 0
			IUPAC: 12	Funny: 0	*: 2

Num reads: 4
Avg. read length: 370
Reads contain 1473 bases, 0 Ns and 8 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 20
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1777
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 20
Contig length: 625
Avg. contig coverage: 2.49
Consensus contains:	A: 155	C: 122	G: 175	T: 171	N: 0
			IUPAC: 1	Funny: 0	*: 1

Num reads: 3
Avg. read length: 520
Reads contain 1554 bases, 1 Ns and 7 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 21
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1774
+[1] +++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 21
Contig length: 512
Avg. contig coverage: 2.66
Consensus contains:	A: 126	C: 117	G: 103	T: 164	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 4
Avg. read length: 340
Reads contain 1362 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 1 Strong RMB
 - 0 Weak RMB
 - 0 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering tags to readpool.

The previously assembled contig had grave misassemblies, rebuilding contig 21 now.
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1774
+[1] pp+pp
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 21
Contig length: 359
Avg. contig coverage: 1.54
Consensus contains:	A: 89	C: 81	G: 73	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 276
Reads contain 553 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 22
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1772
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 22
Contig length: 512
Avg. contig coverage: 1.58
Consensus contains:	A: 126	C: 117	G: 104	T: 164	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 405
Reads contain 809 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 23
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1770
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 23
Contig length: 462
Avg. contig coverage: 2.78
Consensus contains:	A: 106	C: 89	G: 113	T: 153	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 3
Avg. read length: 429
Reads contain 1285 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 24
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1767
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 24
Contig length: 680
Avg. contig coverage: 2.53
Consensus contains:	A: 174	C: 134	G: 187	T: 181	N: 0
			IUPAC: 1	Funny: 0	*: 3

Num reads: 3
Avg. read length: 574
Reads contain 1718 bases, 1 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 25
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1764
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 25
Contig length: 695
Avg. contig coverage: 2.1
Consensus contains:	A: 198	C: 173	G: 138	T: 185	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 3
Avg. read length: 488
Reads contain 1464 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 26
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1761
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 26
Contig length: 440
Avg. contig coverage: 2.87
Consensus contains:	A: 109	C: 102	G: 105	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 3
Avg. read length: 422
Reads contain 1265 bases, 1 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 27
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1758
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 27
Contig length: 510
Avg. contig coverage: 1
Consensus contains:	A: 123	C: 125	G: 138	T: 123	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 510
Reads contain 509 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 28
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1757
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 28
Contig length: 552
Avg. contig coverage: 2.93
Consensus contains:	A: 151	C: 132	G: 127	T: 121	N: 0
			IUPAC: 16	Funny: 0	*: 5

Num reads: 3
Avg. read length: 539
Reads contain 1605 bases, 2 Ns and 12 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 29
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1754
+[1] ++a
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 29
Contig length: 585
Avg. contig coverage: 2.21
Consensus contains:	A: 180	C: 139	G: 109	T: 143	N: 0
			IUPAC: 13	Funny: 0	*: 1

Num reads: 3
Avg. read length: 432
Reads contain 1295 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 30
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1751
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 30
Contig length: 467
Avg. contig coverage: 2.81
Consensus contains:	A: 114	C: 78	G: 151	T: 118	N: 0
			IUPAC: 6	Funny: 0	*: 0

Num reads: 3
Avg. read length: 438
Reads contain 1315 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 31
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1748
+[1] +++ara
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 31
Contig length: 415
Avg. contig coverage: 3.59
Consensus contains:	A: 71	C: 109	G: 91	T: 94	N: 0
			IUPAC: 45	Funny: 0	*: 5

Num reads: 4
Avg. read length: 372
Reads contain 1478 bases, 0 Ns and 13 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 32
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1744
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 32
Contig length: 490
Avg. contig coverage: 2.6
Consensus contains:	A: 131	C: 93	G: 126	T: 136	N: 0
			IUPAC: 2	Funny: 0	*: 2

Num reads: 3
Avg. read length: 424
Reads contain 1270 bases, 0 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 33
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1741
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 33
Contig length: 519
Avg. contig coverage: 2.75
Consensus contains:	A: 143	C: 129	G: 78	T: 150	N: 0
			IUPAC: 18	Funny: 0	*: 1

Num reads: 3
Avg. read length: 476
Reads contain 1428 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 34
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1738
+[1] ++++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 34
Contig length: 570
Avg. contig coverage: 3.37
Consensus contains:	A: 153	C: 116	G: 145	T: 120	N: 0
			IUPAC: 34	Funny: 0	*: 2

Num reads: 5
Avg. read length: 384
Reads contain 1915 bases, 0 Ns and 7 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 6 Strong RMB
 - 0 Weak RMB
 - 0 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering tags to readpool.

The previously assembled contig had grave misassemblies, rebuilding contig 34 now.
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1738
+[1] ppp
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 34
Contig length: 460
Avg. contig coverage: 1
Consensus contains:	A: 134	C: 92	G: 131	T: 103	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 460
Reads contain 460 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 35
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1737
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 35
Contig length: 538
Avg. contig coverage: 2.48
Consensus contains:	A: 133	C: 147	G: 100	T: 153	N: 0
			IUPAC: 5	Funny: 0	*: 0

Num reads: 3
Avg. read length: 446
Reads contain 1337 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 36
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1734
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 36
Contig length: 540
Avg. contig coverage: 2.73
Consensus contains:	A: 152	C: 128	G: 91	T: 167	N: 0
			IUPAC: 0	Funny: 0	*: 2

Num reads: 3
Avg. read length: 492
Reads contain 1472 bases, 0 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 37
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1731
+[1] +++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 37
Contig length: 557
Avg. contig coverage: 2.66
Consensus contains:	A: 123	C: 131	G: 131	T: 146	N: 0
			IUPAC: 14	Funny: 0	*: 12

Num reads: 4
Avg. read length: 371
Reads contain 1454 bases, 0 Ns and 32 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 38
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1727
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 38
Contig length: 377
Avg. contig coverage: 2.93
Consensus contains:	A: 86	C: 104	G: 85	T: 100	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 3
Avg. read length: 368
Reads contain 1101 bases, 3 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 39
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1724
+[1] +++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 39
Contig length: 464
Avg. contig coverage: 3.61
Consensus contains:	A: 125	C: 121	G: 92	T: 109	N: 0
			IUPAC: 9	Funny: 0	*: 8

Num reads: 4
Avg. read length: 419
Reads contain 1653 bases, 0 Ns and 24 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 40
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1720
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 40
Contig length: 589
Avg. contig coverage: 2.17
Consensus contains:	A: 185	C: 139	G: 113	T: 151	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 3
Avg. read length: 427
Reads contain 1281 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 41
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1717
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 41
Contig length: 511
Avg. contig coverage: 2.68
Consensus contains:	A: 138	C: 148	G: 102	T: 122	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 3
Avg. read length: 457
Reads contain 1373 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 42
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1714
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 42
Contig length: 517
Avg. contig coverage: 1.98
Consensus contains:	A: 111	C: 135	G: 110	T: 154	N: 0
			IUPAC: 5	Funny: 0	*: 2

Num reads: 2
Avg. read length: 512
Reads contain 1020 bases, 0 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 43
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1712
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 43
Contig length: 548
Avg. contig coverage: 2.2
Consensus contains:	A: 109	C: 114	G: 116	T: 209	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 3
Avg. read length: 402
Reads contain 1207 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 44
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1709
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 44
Contig length: 530
Avg. contig coverage: 2.41
Consensus contains:	A: 160	C: 119	G: 125	T: 117	N: 0
			IUPAC: 5	Funny: 0	*: 4

Num reads: 3
Avg. read length: 426
Reads contain 1273 bases, 1 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 45
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1706
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 45
Contig length: 523
Avg. contig coverage: 2.43
Consensus contains:	A: 136	C: 126	G: 126	T: 127	N: 0
			IUPAC: 6	Funny: 0	*: 2

Num reads: 3
Avg. read length: 424
Reads contain 1267 bases, 0 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 46
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1703
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 46
Contig length: 382
Avg. contig coverage: 2.72
Consensus contains:	A: 84	C: 96	G: 86	T: 115	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 3
Avg. read length: 346
Reads contain 1040 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 47
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1700
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 47
Contig length: 576
Avg. contig coverage: 2.3
Consensus contains:	A: 178	C: 145	G: 103	T: 136	N: 0
			IUPAC: 12	Funny: 0	*: 2

Num reads: 3
Avg. read length: 442
Reads contain 1323 bases, 0 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 48
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1697
+[1] ++r
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 48
Contig length: 495
Avg. contig coverage: 2.42
Consensus contains:	A: 123	C: 136	G: 93	T: 134	N: 0
			IUPAC: 7	Funny: 0	*: 2

Num reads: 3
Avg. read length: 400
Reads contain 1192 bases, 1 Ns and 7 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 49
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1694
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 49
Contig length: 415
Avg. contig coverage: 2.86
Consensus contains:	A: 95	C: 127	G: 87	T: 104	N: 0
			IUPAC: 1	Funny: 0	*: 1

Num reads: 3
Avg. read length: 396
Reads contain 1183 bases, 0 Ns and 7 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 50
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1691
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 50
Contig length: 577
Avg. contig coverage: 2.22
Consensus contains:	A: 194	C: 113	G: 109	T: 154	N: 2
			IUPAC: 0	Funny: 0	*: 5

Num reads: 3
Avg. read length: 427
Reads contain 1271 bases, 2 Ns and 10 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 51
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1688
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 51
Contig length: 621
Avg. contig coverage: 2.08
Consensus contains:	A: 164	C: 163	G: 128	T: 158	N: 0
			IUPAC: 8	Funny: 0	*: 0

Num reads: 3
Avg. read length: 431
Reads contain 1295 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 52
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1685
+[1] ++a
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 52
Contig length: 694
Avg. contig coverage: 1.98
Consensus contains:	A: 225	C: 180	G: 119	T: 168	N: 0
			IUPAC: 1	Funny: 0	*: 1

Num reads: 3
Avg. read length: 459
Reads contain 1376 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 53
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1682
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 53
Contig length: 451
Avg. contig coverage: 2.42
Consensus contains:	A: 100	C: 132	G: 115	T: 100	N: 0
			IUPAC: 2	Funny: 0	*: 2

Num reads: 3
Avg. read length: 365
Reads contain 1093 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 54
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1679
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 54
Contig length: 608
Avg. contig coverage: 1.96
Consensus contains:	A: 184	C: 118	G: 156	T: 150	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 597
Reads contain 1195 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 55
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1677
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 55
Contig length: 929
Avg. contig coverage: 1.67
Consensus contains:	A: 277	C: 179	G: 187	T: 283	N: 0
			IUPAC: 1	Funny: 0	*: 2

Num reads: 3
Avg. read length: 520
Reads contain 1554 bases, 1 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 56
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1674
+[1] +++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 56
Contig length: 492
Avg. contig coverage: 2.79
Consensus contains:	A: 135	C: 130	G: 74	T: 128	N: 0
			IUPAC: 22	Funny: 0	*: 3

Num reads: 4
Avg. read length: 344
Reads contain 1365 bases, 0 Ns and 11 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 1 Strong RMB
 - 0 Weak RMB
 - 0 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering tags to readpool.

The previously assembled contig had grave misassemblies, rebuilding contig 56 now.
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1674
+[1] +pp
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 56
Contig length: 357
Avg. contig coverage: 1.81
Consensus contains:	A: 114	C: 97	G: 53	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 323
Reads contain 647 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 57
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1672
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 57
Contig length: 938
Avg. contig coverage: 1.65
Consensus contains:	A: 253	C: 280	G: 185	T: 218	N: 0
			IUPAC: 1	Funny: 0	*: 1

Num reads: 3
Avg. read length: 517
Reads contain 1549 bases, 1 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 58
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1669
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 58
Contig length: 549
Avg. contig coverage: 2.53
Consensus contains:	A: 131	C: 124	G: 172	T: 117	N: 0
			IUPAC: 3	Funny: 0	*: 2

Num reads: 3
Avg. read length: 463
Reads contain 1384 bases, 0 Ns and 7 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 59
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1666
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 59
Contig length: 602
Avg. contig coverage: 2.2
Consensus contains:	A: 156	C: 131	G: 133	T: 177	N: 0
			IUPAC: 0	Funny: 0	*: 5

Num reads: 3
Avg. read length: 442
Reads contain 1319 bases, 0 Ns and 7 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 60
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1663
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 60
Contig length: 637
Avg. contig coverage: 1.91
Consensus contains:	A: 107	C: 187	G: 104	T: 239	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 610
Reads contain 1218 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 61
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1661
+[1] ++++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 61
Contig length: 523
Avg. contig coverage: 3.47
Consensus contains:	A: 140	C: 112	G: 127	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 3

Num reads: 5
Avg. read length: 363
Reads contain 1808 bases, 0 Ns and 9 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 62
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1656
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 62
Contig length: 425
Avg. contig coverage: 2.35
Consensus contains:	A: 91	C: 93	G: 151	T: 89	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 3
Avg. read length: 333
Reads contain 1001 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 63
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1653
+[1] ++++r
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 63
Contig length: 914
Avg. contig coverage: 2.64
Consensus contains:	A: 274	C: 201	G: 173	T: 218	N: 0
			IUPAC: 42	Funny: 0	*: 6

Num reads: 5
Avg. read length: 483
Reads contain 2401 bases, 0 Ns and 18 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 5 Strong RMB
 - 0 Weak RMB
 - 0 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering tags to readpool.

The previously assembled contig had grave misassemblies, rebuilding contig 63 now.
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1653
+[1] ++ppr
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 63
Contig length: 908
Avg. contig coverage: 1.82
Consensus contains:	A: 282	C: 204	G: 174	T: 224	N: 0
			IUPAC: 24	Funny: 0	*: 0

Num reads: 3
Avg. read length: 553
Reads contain 1657 bases, 0 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 64
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1650
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 64
Contig length: 448
Avg. contig coverage: 2.26
Consensus contains:	A: 100	C: 106	G: 137	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 3
Avg. read length: 338
Reads contain 1014 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 65
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1647
+[1] +++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 65
Contig length: 372
Avg. contig coverage: 3.08
Consensus contains:	A: 65	C: 78	G: 119	T: 80	N: 0
			IUPAC: 29	Funny: 0	*: 1

Num reads: 4
Avg. read length: 286
Reads contain 1141 bases, 0 Ns and 6 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 66
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1643
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 66
Contig length: 378
Avg. contig coverage: 2.47
Consensus contains:	A: 138	C: 100	G: 54	T: 84	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 3
Avg. read length: 311
Reads contain 935 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 67
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1640
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 67
Contig length: 1030
Avg. contig coverage: 1.54
Consensus contains:	A: 246	C: 212	G: 296	T: 275	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 3
Avg. read length: 531
Reads contain 1594 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 68
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1637
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 68
Contig length: 527
Avg. contig coverage: 1.97
Consensus contains:	A: 164	C: 125	G: 100	T: 138	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 520
Reads contain 1040 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 69
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1635
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 69
Contig length: 667
Avg. contig coverage: 2.07
Consensus contains:	A: 178	C: 137	G: 166	T: 182	N: 0
			IUPAC: 1	Funny: 0	*: 3

Num reads: 3
Avg. read length: 460
Reads contain 1373 bases, 1 Ns and 8 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 70
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1632
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 70
Contig length: 537
Avg. contig coverage: 1.96
Consensus contains:	A: 159	C: 141	G: 119	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 528
Reads contain 1057 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 71
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1630
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 71
Contig length: 502
Avg. contig coverage: 2
Consensus contains:	A: 165	C: 112	G: 117	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 502
Reads contain 1004 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 72
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1628
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 72
Contig length: 369
Avg. contig coverage: 2.61
Consensus contains:	A: 95	C: 89	G: 69	T: 110	N: 0
			IUPAC: 5	Funny: 0	*: 1

Num reads: 3
Avg. read length: 322
Reads contain 962 bases, 0 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 73
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1625
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 73
Contig length: 333
Avg. contig coverage: 2.61
Consensus contains:	A: 88	C: 71	G: 75	T: 95	N: 0
			IUPAC: 4	Funny: 0	*: 0

Num reads: 3
Avg. read length: 290
Reads contain 868 bases, 1 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 74
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1622
+[1] +a++++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 74
Contig length: 773
Avg. contig coverage: 3.56
Consensus contains:	A: 165	C: 190	G: 172	T: 194	N: 0
			IUPAC: 46	Funny: 0	*: 6

Num reads: 6
Avg. read length: 459
Reads contain 2726 bases, 5 Ns and 23 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 12 Strong RMB
 - 0 Weak RMB
 - 0 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering tags to readpool.

The previously assembled contig had grave misassemblies, rebuilding contig 74 now.
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1622
+[1] +a+pp+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 74
Contig length: 770
Avg. contig coverage: 2.31
Consensus contains:	A: 175	C: 196	G: 184	T: 205	N: 0
			IUPAC: 7	Funny: 0	*: 3

Num reads: 4
Avg. read length: 446
Reads contain 1775 bases, 4 Ns and 6 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 75
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1618
+[1] +++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 75
Contig length: 769
Avg. contig coverage: 2.26
Consensus contains:	A: 227	C: 170	G: 146	T: 210	N: 0
			IUPAC: 8	Funny: 0	*: 8

Num reads: 4
Avg. read length: 436
Reads contain 1734 bases, 0 Ns and 11 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 76
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1614
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 76
Contig length: 564
Avg. contig coverage: 1.93
Consensus contains:	A: 154	C: 112	G: 126	T: 169	N: 0
			IUPAC: 2	Funny: 0	*: 1

Num reads: 2
Avg. read length: 544
Reads contain 1088 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 77
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1612
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 77
Contig length: 569
Avg. contig coverage: 2.44
Consensus contains:	A: 124	C: 144	G: 142	T: 130	N: 0
			IUPAC: 29	Funny: 0	*: 0

Num reads: 3
Avg. read length: 464
Reads contain 1391 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 78
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1609
+[1] +r
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 78
Contig length: 482
Avg. contig coverage: 1.81
Consensus contains:	A: 119	C: 106	G: 129	T: 128	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 438
Reads contain 876 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 79
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1607
+[1] ++a
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 79
Contig length: 519
Avg. contig coverage: 2.23
Consensus contains:	A: 158	C: 82	G: 122	T: 137	N: 0
			IUPAC: 17	Funny: 0	*: 3

Num reads: 3
Avg. read length: 386
Reads contain 1150 bases, 1 Ns and 7 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 80
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1604
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 80
Contig length: 530
Avg. contig coverage: 1.93
Consensus contains:	A: 132	C: 126	G: 141	T: 130	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 3
Avg. read length: 341
Reads contain 1024 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 81
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1601
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 81
Contig length: 491
Avg. contig coverage: 1.98
Consensus contains:	A: 143	C: 84	G: 106	T: 154	N: 1
			IUPAC: 2	Funny: 0	*: 1

Num reads: 2
Avg. read length: 488
Reads contain 972 bases, 4 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 82
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1599
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 82
Contig length: 472
Avg. contig coverage: 1.99
Consensus contains:	A: 114	C: 144	G: 84	T: 129	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 470
Reads contain 940 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 83
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1597
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 83
Contig length: 562
Avg. contig coverage: 1.9
Consensus contains:	A: 119	C: 138	G: 142	T: 163	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 536
Reads contain 1069 bases, 2 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 84
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1595
+[1] ++a
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 84
Contig length: 896
Avg. contig coverage: 1.6
Consensus contains:	A: 247	C: 191	G: 210	T: 238	N: 0
			IUPAC: 8	Funny: 0	*: 2

Num reads: 3
Avg. read length: 480
Reads contain 1435 bases, 1 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 85
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1592
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 85
Contig length: 568
Avg. contig coverage: 2.51
Consensus contains:	A: 136	C: 107	G: 147	T: 150	N: 0
			IUPAC: 16	Funny: 0	*: 12

Num reads: 3
Avg. read length: 475
Reads contain 1401 bases, 0 Ns and 25 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 86
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1589
+[1] +++a
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 86
Contig length: 705
Avg. contig coverage: 2.26
Consensus contains:	A: 184	C: 159	G: 175	T: 143	N: 1
			IUPAC: 42	Funny: 0	*: 1

Num reads: 4
Avg. read length: 399
Reads contain 1589 bases, 1 Ns and 9 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 4 Strong RMB
 - 0 Weak RMB
 - 0 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering tags to readpool.

The previously assembled contig had grave misassemblies, rebuilding contig 86 now.
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1589
+[1] ppp
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 86
Contig length: 354
Avg. contig coverage: 1
Consensus contains:	A: 91	C: 100	G: 86	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 354
Reads contain 354 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 87
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1588
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 87
Contig length: 867
Avg. contig coverage: 1.67
Consensus contains:	A: 235	C: 162	G: 193	T: 274	N: 0
			IUPAC: 2	Funny: 0	*: 1

Num reads: 3
Avg. read length: 482
Reads contain 1445 bases, 1 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 88
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1585
+[1] +++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 88
Contig length: 589
Avg. contig coverage: 2.57
Consensus contains:	A: 144	C: 175	G: 114	T: 114	N: 0
			IUPAC: 38	Funny: 0	*: 4

Num reads: 4
Avg. read length: 378
Reads contain 1499 bases, 0 Ns and 15 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 2 Strong RMB
 - 0 Weak RMB
 - 0 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering tags to readpool.

The previously assembled contig had grave misassemblies, rebuilding contig 88 now.
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1585
+[1] p+p
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 88
Contig length: 454
Avg. contig coverage: 1.42
Consensus contains:	A: 131	C: 126	G: 93	T: 102	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 2
Avg. read length: 323
Reads contain 647 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 89
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1583
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 89
Contig length: 552
Avg. contig coverage: 1.82
Consensus contains:	A: 167	C: 109	G: 142	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 503
Reads contain 1006 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 90
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1581
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 90
Contig length: 523
Avg. contig coverage: 1.86
Consensus contains:	A: 141	C: 138	G: 115	T: 128	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 486
Reads contain 972 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 91
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1579
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 91
Contig length: 389
Avg. contig coverage: 2.53
Consensus contains:	A: 120	C: 84	G: 93	T: 69	N: 0
			IUPAC: 22	Funny: 0	*: 1

Num reads: 3
Avg. read length: 328
Reads contain 980 bases, 3 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 92
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1576
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 92
Contig length: 469
Avg. contig coverage: 1.94
Consensus contains:	A: 164	C: 124	G: 75	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 456
Reads contain 913 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 93
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1574
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 93
Contig length: 539
Avg. contig coverage: 1.84
Consensus contains:	A: 146	C: 92	G: 133	T: 167	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 496
Reads contain 993 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 94
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1572
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 94
Contig length: 490
Avg. contig coverage: 2
Consensus contains:	A: 116	C: 125	G: 90	T: 158	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 490
Reads contain 979 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 95
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1570
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 95
Contig length: 377
Avg. contig coverage: 2.15
Consensus contains:	A: 62	C: 85	G: 116	T: 114	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 3
Avg. read length: 270
Reads contain 811 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 96
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1567
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 96
Contig length: 504
Avg. contig coverage: 1.85
Consensus contains:	A: 128	C: 126	G: 91	T: 158	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 467
Reads contain 935 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 97
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1565
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 97
Contig length: 494
Avg. contig coverage: 1.95
Consensus contains:	A: 109	C: 118	G: 127	T: 140	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 483
Reads contain 965 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 98
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1563
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 98
Contig length: 465
Avg. contig coverage: 1.92
Consensus contains:	A: 134	C: 90	G: 118	T: 122	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 447
Reads contain 895 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 99
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1561
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 99
Contig length: 508
Avg. contig coverage: 1.84
Consensus contains:	A: 159	C: 97	G: 128	T: 123	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 467
Reads contain 935 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 100
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1559
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 100
Contig length: 592
Avg. contig coverage: 1.85
Consensus contains:	A: 142	C: 121	G: 180	T: 145	N: 0
			IUPAC: 3	Funny: 0	*: 1

Num reads: 2
Avg. read length: 550
Reads contain 1100 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 101
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1557
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 101
Contig length: 505
Avg. contig coverage: 1.88
Consensus contains:	A: 139	C: 103	G: 128	T: 135	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 475
Reads contain 950 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 102
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1555
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 102
Contig length: 456
Avg. contig coverage: 1.58
Consensus contains:	A: 122	C: 128	G: 73	T: 123	N: 0
			IUPAC: 5	Funny: 0	*: 5

Num reads: 2
Avg. read length: 362
Reads contain 718 bases, 0 Ns and 6 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 103
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1553
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 103
Contig length: 548
Avg. contig coverage: 1.83
Consensus contains:	A: 149	C: 119	G: 138	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 503
Reads contain 1006 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 104
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1551
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 104
Contig length: 492
Avg. contig coverage: 1.94
Consensus contains:	A: 132	C: 121	G: 95	T: 140	N: 0
			IUPAC: 3	Funny: 0	*: 1

Num reads: 2
Avg. read length: 479
Reads contain 957 bases, 1 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 105
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1549
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 105
Contig length: 541
Avg. contig coverage: 1.8
Consensus contains:	A: 153	C: 126	G: 111	T: 150	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 489
Reads contain 977 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 106
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1547
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 106
Contig length: 468
Avg. contig coverage: 1.87
Consensus contains:	A: 146	C: 92	G: 82	T: 148	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 438
Reads contain 876 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 107
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1545
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 107
Contig length: 611
Avg. contig coverage: 1.68
Consensus contains:	A: 132	C: 203	G: 81	T: 195	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 513
Reads contain 1027 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 108
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1543
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 108
Contig length: 457
Avg. contig coverage: 1.93
Consensus contains:	A: 113	C: 122	G: 105	T: 115	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 2
Avg. read length: 441
Reads contain 883 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 109
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1541
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 109
Contig length: 401
Avg. contig coverage: 2
Consensus contains:	A: 77	C: 125	G: 102	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 401
Reads contain 802 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 110
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1539
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 110
Contig length: 438
Avg. contig coverage: 1.94
Consensus contains:	A: 97	C: 114	G: 124	T: 103	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 425
Reads contain 851 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 111
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1537
+[1] +++a
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 111
Contig length: 735
Avg. contig coverage: 2.4
Consensus contains:	A: 176	C: 134	G: 183	T: 201	N: 0
			IUPAC: 36	Funny: 0	*: 5

Num reads: 4
Avg. read length: 441
Reads contain 1749 bases, 0 Ns and 16 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 112
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1533
+[1] +a
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 112
Contig length: 402
Avg. contig coverage: 1.85
Consensus contains:	A: 133	C: 91	G: 76	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 372
Reads contain 745 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 113
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1531
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 113
Contig length: 437
Avg. contig coverage: 1.96
Consensus contains:	A: 101	C: 75	G: 94	T: 167	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 428
Reads contain 857 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 114
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1529
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 114
Contig length: 589
Avg. contig coverage: 1.91
Consensus contains:	A: 143	C: 131	G: 168	T: 132	N: 0
			IUPAC: 13	Funny: 0	*: 2

Num reads: 3
Avg. read length: 375
Reads contain 1115 bases, 7 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 115
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1526
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 115
Contig length: 446
Avg. contig coverage: 2.41
Consensus contains:	A: 122	C: 114	G: 100	T: 108	N: 0
			IUPAC: 1	Funny: 0	*: 1

Num reads: 3
Avg. read length: 359
Reads contain 1074 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 116
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1523
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 116
Contig length: 428
Avg. contig coverage: 1.91
Consensus contains:	A: 124	C: 115	G: 88	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 410
Reads contain 820 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 117
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1521
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 117
Contig length: 513
Avg. contig coverage: 1.76
Consensus contains:	A: 119	C: 129	G: 132	T: 132	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 453
Reads contain 906 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 118
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1519
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 118
Contig length: 489
Avg. contig coverage: 1.78
Consensus contains:	A: 135	C: 128	G: 85	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 436
Reads contain 872 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 119
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1517
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 119
Contig length: 509
Avg. contig coverage: 1.93
Consensus contains:	A: 125	C: 99	G: 140	T: 143	N: 0
			IUPAC: 0	Funny: 0	*: 2

Num reads: 2
Avg. read length: 493
Reads contain 983 bases, 1 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 120
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1515
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 120
Contig length: 550
Avg. contig coverage: 1.73
Consensus contains:	A: 138	C: 176	G: 114	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 477
Reads contain 955 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 121
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1513
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 121
Contig length: 540
Avg. contig coverage: 1.72
Consensus contains:	A: 124	C: 150	G: 108	T: 158	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 466
Reads contain 932 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 122
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1511
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 122
Contig length: 1056
Avg. contig coverage: 1.43
Consensus contains:	A: 309	C: 194	G: 265	T: 284	N: 0
			IUPAC: 3	Funny: 0	*: 1

Num reads: 3
Avg. read length: 506
Reads contain 1519 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 123
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1508
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 123
Contig length: 502
Avg. contig coverage: 1.82
Consensus contains:	A: 123	C: 105	G: 130	T: 143	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 458
Reads contain 916 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 124
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1506
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 124
Contig length: 545
Avg. contig coverage: 1.81
Consensus contains:	A: 150	C: 108	G: 132	T: 144	N: 1
			IUPAC: 10	Funny: 0	*: 0

Num reads: 2
Avg. read length: 493
Reads contain 984 bases, 3 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 125
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1504
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 125
Contig length: 423
Avg. contig coverage: 1.88
Consensus contains:	A: 94	C: 97	G: 117	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 399
Reads contain 798 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 126
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1502
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 126
Contig length: 429
Avg. contig coverage: 1.89
Consensus contains:	A: 139	C: 93	G: 104	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 407
Reads contain 815 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 127
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1500
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 127
Contig length: 397
Avg. contig coverage: 2
Consensus contains:	A: 142	C: 92	G: 64	T: 98	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 397
Reads contain 794 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 128
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1498
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 128
Contig length: 587
Avg. contig coverage: 1.8
Consensus contains:	A: 152	C: 135	G: 113	T: 178	N: 0
			IUPAC: 9	Funny: 0	*: 0

Num reads: 2
Avg. read length: 531
Reads contain 1062 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 129
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1496
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 129
Contig length: 379
Avg. contig coverage: 1.99
Consensus contains:	A: 64	C: 120	G: 99	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 377
Reads contain 754 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 130
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1494
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 130
Contig length: 421
Avg. contig coverage: 1.88
Consensus contains:	A: 114	C: 119	G: 67	T: 120	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 397
Reads contain 793 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 131
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1492
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 131
Contig length: 435
Avg. contig coverage: 1.88
Consensus contains:	A: 125	C: 93	G: 98	T: 119	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 409
Reads contain 819 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 132
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1490
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 132
Contig length: 508
Avg. contig coverage: 1.72
Consensus contains:	A: 159	C: 145	G: 88	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 438
Reads contain 875 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 133
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1488
+[1] ++++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 133
Contig length: 929
Avg. contig coverage: 2.07
Consensus contains:	A: 213	C: 208	G: 292	T: 189	N: 0
			IUPAC: 16	Funny: 0	*: 11

Num reads: 5
Avg. read length: 385
Reads contain 1894 bases, 0 Ns and 34 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 134
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1483
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 134
Contig length: 607
Avg. contig coverage: 1.58
Consensus contains:	A: 132	C: 155	G: 162	T: 158	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 480
Reads contain 961 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 135
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1481
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 135
Contig length: 599
Avg. contig coverage: 1.79
Consensus contains:	A: 118	C: 145	G: 173	T: 150	N: 0
			IUPAC: 12	Funny: 0	*: 1

Num reads: 3
Avg. read length: 358
Reads contain 1074 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 136
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1478
+[1] ++a
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 136
Contig length: 379
Avg. contig coverage: 2.05
Consensus contains:	A: 98	C: 102	G: 71	T: 96	N: 0
			IUPAC: 9	Funny: 0	*: 3

Num reads: 3
Avg. read length: 259
Reads contain 772 bases, 1 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 137
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1475
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 137
Contig length: 474
Avg. contig coverage: 1.8
Consensus contains:	A: 98	C: 96	G: 152	T: 119	N: 0
			IUPAC: 9	Funny: 0	*: 0

Num reads: 2
Avg. read length: 428
Reads contain 852 bases, 0 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 138
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1473
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 138
Contig length: 668
Avg. contig coverage: 1.76
Consensus contains:	A: 172	C: 128	G: 156	T: 188	N: 0
			IUPAC: 22	Funny: 0	*: 2

Num reads: 3
Avg. read length: 392
Reads contain 1167 bases, 1 Ns and 8 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 139
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1470
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 139
Contig length: 360
Avg. contig coverage: 1.96
Consensus contains:	A: 67	C: 88	G: 82	T: 121	N: 1
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 354
Reads contain 708 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 140
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1468
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 140
Contig length: 386
Avg. contig coverage: 1.9
Consensus contains:	A: 93	C: 86	G: 119	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 368
Reads contain 735 bases, 1 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 141
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1466
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 141
Contig length: 466
Avg. contig coverage: 1.93
Consensus contains:	A: 131	C: 105	G: 119	T: 109	N: 0
			IUPAC: 1	Funny: 0	*: 1

Num reads: 2
Avg. read length: 452
Reads contain 900 bases, 1 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 142
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1464
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 142
Contig length: 471
Avg. contig coverage: 1.71
Consensus contains:	A: 159	C: 122	G: 56	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 404
Reads contain 809 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 143
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1462
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 143
Contig length: 337
Avg. contig coverage: 2
Consensus contains:	A: 78	C: 83	G: 68	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 337
Reads contain 674 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 144
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1460
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 144
Contig length: 418
Avg. contig coverage: 1.89
Consensus contains:	A: 123	C: 95	G: 108	T: 90	N: 0
			IUPAC: 1	Funny: 0	*: 1

Num reads: 2
Avg. read length: 397
Reads contain 791 bases, 1 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 145
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1458
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 145
Contig length: 571
Avg. contig coverage: 1.61
Consensus contains:	A: 161	C: 143	G: 101	T: 165	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 462
Reads contain 921 bases, 1 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 146
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1456
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 146
Contig length: 471
Avg. contig coverage: 1.81
Consensus contains:	A: 120	C: 110	G: 111	T: 130	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 428
Reads contain 855 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 147
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1454
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 147
Contig length: 351
Avg. contig coverage: 1.96
Consensus contains:	A: 111	C: 86	G: 45	T: 109	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 344
Reads contain 689 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 148
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1452
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 148
Contig length: 368
Avg. contig coverage: 1.97
Consensus contains:	A: 90	C: 54	G: 86	T: 137	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 364
Reads contain 725 bases, 2 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 149
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1450
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 149
Contig length: 670
Avg. contig coverage: 1.82
Consensus contains:	A: 195	C: 130	G: 164	T: 157	N: 0
			IUPAC: 22	Funny: 0	*: 2

Num reads: 3
Avg. read length: 408
Reads contain 1220 bases, 0 Ns and 6 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 150
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1447
+[1] +a
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 150
Contig length: 386
Avg. contig coverage: 1.9
Consensus contains:	A: 90	C: 84	G: 106	T: 102	N: 0
			IUPAC: 2	Funny: 0	*: 2

Num reads: 2
Avg. read length: 367
Reads contain 731 bases, 0 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 151
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1445
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 151
Contig length: 592
Avg. contig coverage: 1.58
Consensus contains:	A: 146	C: 96	G: 166	T: 183	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 468
Reads contain 937 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 152
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1443
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 152
Contig length: 324
Avg. contig coverage: 2
Consensus contains:	A: 119	C: 74	G: 48	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 324
Reads contain 648 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 153
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1441
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 153
Contig length: 334
Avg. contig coverage: 1.99
Consensus contains:	A: 106	C: 87	G: 60	T: 80	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 333
Reads contain 665 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 154
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1439
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 154
Contig length: 338
Avg. contig coverage: 1.98
Consensus contains:	A: 87	C: 83	G: 79	T: 88	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 335
Reads contain 670 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 155
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1437
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 155
Contig length: 456
Avg. contig coverage: 1.94
Consensus contains:	A: 118	C: 87	G: 104	T: 143	N: 0
			IUPAC: 1	Funny: 0	*: 3

Num reads: 2
Avg. read length: 443
Reads contain 880 bases, 3 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 156
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1435
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 156
Contig length: 356
Avg. contig coverage: 1.89
Consensus contains:	A: 87	C: 77	G: 124	T: 68	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 337
Reads contain 675 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 157
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1433
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 157
Contig length: 624
Avg. contig coverage: 1.53
Consensus contains:	A: 133	C: 152	G: 132	T: 206	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 479
Reads contain 959 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 158
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1431
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 158
Contig length: 395
Avg. contig coverage: 1.93
Consensus contains:	A: 105	C: 99	G: 97	T: 93	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 382
Reads contain 765 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 159
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1429
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 159
Contig length: 418
Avg. contig coverage: 1.82
Consensus contains:	A: 109	C: 95	G: 91	T: 119	N: 0
			IUPAC: 4	Funny: 0	*: 0

Num reads: 2
Avg. read length: 381
Reads contain 763 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 160
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1427
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 160
Contig length: 698
Avg. contig coverage: 1.91
Consensus contains:	A: 208	C: 178	G: 121	T: 142	N: 0
			IUPAC: 45	Funny: 0	*: 4

Num reads: 3
Avg. read length: 445
Reads contain 1324 bases, 1 Ns and 10 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 161
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1424
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 161
Contig length: 524
Avg. contig coverage: 1.79
Consensus contains:	A: 117	C: 148	G: 122	T: 126	N: 0
			IUPAC: 10	Funny: 0	*: 1

Num reads: 2
Avg. read length: 470
Reads contain 938 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 162
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1422
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 162
Contig length: 547
Avg. contig coverage: 1.57
Consensus contains:	A: 150	C: 145	G: 104	T: 148	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 430
Reads contain 860 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 163
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1420
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 163
Contig length: 384
Avg. contig coverage: 1.94
Consensus contains:	A: 118	C: 54	G: 74	T: 137	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 374
Reads contain 747 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 164
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1418
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 164
Contig length: 334
Avg. contig coverage: 1.99
Consensus contains:	A: 145	C: 47	G: 69	T: 73	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 333
Reads contain 666 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 165
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1416
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 165
Contig length: 655
Avg. contig coverage: 1.5
Consensus contains:	A: 216	C: 144	G: 124	T: 170	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 493
Reads contain 983 bases, 1 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 166
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1414
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 166
Contig length: 521
Avg. contig coverage: 1.81
Consensus contains:	A: 128	C: 123	G: 134	T: 132	N: 0
			IUPAC: 2	Funny: 0	*: 2

Num reads: 3
Avg. read length: 316
Reads contain 944 bases, 0 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 167
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1411
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 167
Contig length: 307
Avg. contig coverage: 2
Consensus contains:	A: 68	C: 90	G: 62	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 307
Reads contain 614 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 168
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1409
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 168
Contig length: 577
Avg. contig coverage: 1.7
Consensus contains:	A: 158	C: 116	G: 140	T: 163	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 492
Reads contain 984 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 169
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1407
+[1] +a
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 169
Contig length: 281
Avg. contig coverage: 1.96
Consensus contains:	A: 70	C: 58	G: 79	T: 70	N: 0
			IUPAC: 3	Funny: 0	*: 1

Num reads: 2
Avg. read length: 276
Reads contain 551 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 170
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1405
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 170
Contig length: 668
Avg. contig coverage: 1.66
Consensus contains:	A: 169	C: 167	G: 145	T: 183	N: 0
			IUPAC: 2	Funny: 0	*: 2

Num reads: 2
Avg. read length: 556
Reads contain 1107 bases, 0 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 171
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1403
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 171
Contig length: 636
Avg. contig coverage: 1.58
Consensus contains:	A: 179	C: 157	G: 106	T: 188	N: 0
			IUPAC: 5	Funny: 0	*: 1

Num reads: 2
Avg. read length: 503
Reads contain 1006 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 172
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1401
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 172
Contig length: 530
Avg. contig coverage: 1.59
Consensus contains:	A: 161	C: 119	G: 103	T: 146	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 422
Reads contain 843 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 173
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1399
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 173
Contig length: 444
Avg. contig coverage: 1.9
Consensus contains:	A: 153	C: 101	G: 73	T: 114	N: 0
			IUPAC: 2	Funny: 0	*: 1

Num reads: 2
Avg. read length: 424
Reads contain 845 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 174
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1397
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 174
Contig length: 423
Avg. contig coverage: 1.76
Consensus contains:	A: 135	C: 96	G: 102	T: 88	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 2
Avg. read length: 372
Reads contain 744 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 175
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1395
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 175
Contig length: 520
Avg. contig coverage: 2.1
Consensus contains:	A: 104	C: 113	G: 122	T: 149	N: 0
			IUPAC: 27	Funny: 0	*: 5

Num reads: 3
Avg. read length: 365
Reads contain 1086 bases, 0 Ns and 9 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 176
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1392
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 176
Contig length: 596
Avg. contig coverage: 1.6
Consensus contains:	A: 160	C: 155	G: 108	T: 170	N: 0
			IUPAC: 2	Funny: 0	*: 1

Num reads: 2
Avg. read length: 479
Reads contain 957 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 177
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1390
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 177
Contig length: 712
Avg. contig coverage: 1.81
Consensus contains:	A: 247	C: 175	G: 104	T: 174	N: 0
			IUPAC: 8	Funny: 0	*: 4

Num reads: 3
Avg. read length: 430
Reads contain 1277 bases, 4 Ns and 11 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 178
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1387
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 178
Contig length: 441
Avg. contig coverage: 1.71
Consensus contains:	A: 108	C: 77	G: 132	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 379
Reads contain 758 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 179
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1385
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 179
Contig length: 395
Avg. contig coverage: 2.47
Consensus contains:	A: 124	C: 110	G: 41	T: 115	N: 1
			IUPAC: 0	Funny: 0	*: 4

Num reads: 3
Avg. read length: 326
Reads contain 969 bases, 1 Ns and 8 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 180
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1382
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 180
Contig length: 330
Avg. contig coverage: 2
Consensus contains:	A: 82	C: 65	G: 103	T: 78	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 2
Avg. read length: 330
Reads contain 659 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 181
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1380
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 181
Contig length: 362
Avg. contig coverage: 1.8
Consensus contains:	A: 117	C: 99	G: 48	T: 97	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 327
Reads contain 654 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 182
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1378
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 182
Contig length: 480
Avg. contig coverage: 1.62
Consensus contains:	A: 119	C: 108	G: 111	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 389
Reads contain 778 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 183
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1376
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 183
Contig length: 395
Avg. contig coverage: 1.77
Consensus contains:	A: 117	C: 103	G: 76	T: 96	N: 1
			IUPAC: 1	Funny: 0	*: 1

Num reads: 2
Avg. read length: 351
Reads contain 699 bases, 1 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 184
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1374
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 184
Contig length: 353
Avg. contig coverage: 1.86
Consensus contains:	A: 91	C: 66	G: 94	T: 98	N: 0
			IUPAC: 3	Funny: 0	*: 1

Num reads: 2
Avg. read length: 329
Reads contain 657 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 185
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1372
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 185
Contig length: 524
Avg. contig coverage: 1.58
Consensus contains:	A: 116	C: 84	G: 179	T: 143	N: 1
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 415
Reads contain 827 bases, 2 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 186
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1370
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 186
Contig length: 765
Avg. contig coverage: 1.65
Consensus contains:	A: 198	C: 175	G: 180	T: 186	N: 2
			IUPAC: 23	Funny: 0	*: 1

Num reads: 3
Avg. read length: 421
Reads contain 1256 bases, 2 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 187
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1367
+[1] p
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 187
Contig length: 312
Avg. contig coverage: 1
Consensus contains:	A: 86	C: 110	G: 70	T: 46	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 312
Reads contain 312 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 188
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1366
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 188
Contig length: 368
Avg. contig coverage: 1.85
Consensus contains:	A: 84	C: 89	G: 84	T: 110	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 340
Reads contain 679 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 189
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1364
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 189
Contig length: 421
Avg. contig coverage: 1.65
Consensus contains:	A: 112	C: 119	G: 82	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 348
Reads contain 697 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 190
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1362
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 190
Contig length: 399
Avg. contig coverage: 1.97
Consensus contains:	A: 89	C: 83	G: 112	T: 110	N: 1
			IUPAC: 0	Funny: 0	*: 4

Num reads: 2
Avg. read length: 394
Reads contain 780 bases, 1 Ns and 8 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 191
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1360
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 191
Contig length: 301
Avg. contig coverage: 2
Consensus contains:	A: 91	C: 68	G: 52	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 301
Reads contain 601 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 192
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1358
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 192
Contig length: 596
Avg. contig coverage: 1.64
Consensus contains:	A: 101	C: 206	G: 160	T: 119	N: 0
			IUPAC: 10	Funny: 0	*: 0

Num reads: 2
Avg. read length: 490
Reads contain 979 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 193
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1356
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 193
Contig length: 861
Avg. contig coverage: 1.4
Consensus contains:	A: 273	C: 192	G: 176	T: 214	N: 0
			IUPAC: 5	Funny: 0	*: 1

Num reads: 3
Avg. read length: 403
Reads contain 1208 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 194
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1353
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 194
Contig length: 439
Avg. contig coverage: 1.83
Consensus contains:	A: 123	C: 131	G: 77	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 403
Reads contain 806 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 195
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1351
+[1] +a
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 195
Contig length: 676
Avg. contig coverage: 1.86
Consensus contains:	A: 172	C: 152	G: 159	T: 170	N: 0
			IUPAC: 20	Funny: 0	*: 3

Num reads: 2
Avg. read length: 632
Reads contain 1247 bases, 7 Ns and 10 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 196
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1349
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 196
Contig length: 275
Avg. contig coverage: 2
Consensus contains:	A: 81	C: 53	G: 77	T: 64	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 275
Reads contain 550 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 197
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1347
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 197
Contig length: 595
Avg. contig coverage: 1.76
Consensus contains:	A: 158	C: 155	G: 111	T: 155	N: 0
			IUPAC: 15	Funny: 0	*: 1

Num reads: 2
Avg. read length: 525
Reads contain 1048 bases, 2 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 198
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1345
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 198
Contig length: 402
Avg. contig coverage: 1.7
Consensus contains:	A: 93	C: 81	G: 97	T: 129	N: 1
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 342
Reads contain 682 bases, 1 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 199
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1343
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 199
Contig length: 751
Avg. contig coverage: 1.34
Consensus contains:	A: 203	C: 147	G: 179	T: 222	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 503
Reads contain 1007 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 200
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1341
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 200
Contig length: 402
Avg. contig coverage: 1.96
Consensus contains:	A: 94	C: 98	G: 80	T: 126	N: 0
			IUPAC: 4	Funny: 0	*: 0

Num reads: 2
Avg. read length: 395
Reads contain 790 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 201
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1339
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 201
Contig length: 418
Avg. contig coverage: 1.96
Consensus contains:	A: 90	C: 74	G: 143	T: 106	N: 0
			IUPAC: 4	Funny: 0	*: 1

Num reads: 2
Avg. read length: 411
Reads contain 819 bases, 1 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 202
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1337
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 202
Contig length: 422
Avg. contig coverage: 1.67
Consensus contains:	A: 132	C: 134	G: 55	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 352
Reads contain 704 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 203
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1335
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 203
Contig length: 664
Avg. contig coverage: 1.46
Consensus contains:	A: 181	C: 179	G: 141	T: 161	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 2
Avg. read length: 487
Reads contain 975 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 204
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1333
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 204
Contig length: 502
Avg. contig coverage: 1.57
Consensus contains:	A: 132	C: 115	G: 95	T: 157	N: 0
			IUPAC: 1	Funny: 0	*: 2

Num reads: 2
Avg. read length: 395
Reads contain 789 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 205
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1331
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 205
Contig length: 438
Avg. contig coverage: 1.59
Consensus contains:	A: 123	C: 127	G: 92	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 349
Reads contain 698 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 206
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1329
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 206
Contig length: 544
Avg. contig coverage: 1.53
Consensus contains:	A: 179	C: 125	G: 100	T: 139	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 418
Reads contain 836 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 207
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1327
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 207
Contig length: 462
Avg. contig coverage: 1.53
Consensus contains:	A: 124	C: 114	G: 102	T: 120	N: 1
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 355
Reads contain 709 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 208
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1325
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 208
Contig length: 503
Avg. contig coverage: 1.9
Consensus contains:	A: 138	C: 144	G: 98	T: 119	N: 0
			IUPAC: 1	Funny: 0	*: 3

Num reads: 2
Avg. read length: 478
Reads contain 953 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 209
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1323
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 209
Contig length: 511
Avg. contig coverage: 1.49
Consensus contains:	A: 132	C: 128	G: 108	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 383
Reads contain 765 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 210
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1321
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 210
Contig length: 450
Avg. contig coverage: 1.56
Consensus contains:	A: 128	C: 119	G: 98	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 352
Reads contain 704 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 211
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1319
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 211
Contig length: 550
Avg. contig coverage: 1.43
Consensus contains:	A: 204	C: 138	G: 81	T: 125	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 395
Reads contain 788 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 212
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1317
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 212
Contig length: 380
Avg. contig coverage: 1.66
Consensus contains:	A: 103	C: 92	G: 81	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 316
Reads contain 632 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 213
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1315
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 213
Contig length: 467
Avg. contig coverage: 2.01
Consensus contains:	A: 110	C: 123	G: 94	T: 114	N: 0
			IUPAC: 25	Funny: 0	*: 1

Num reads: 3
Avg. read length: 314
Reads contain 939 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 214
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1312
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 214
Contig length: 505
Avg. contig coverage: 1.82
Consensus contains:	A: 165	C: 91	G: 91	T: 157	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 460
Reads contain 919 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 215
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1310
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 215
Contig length: 605
Avg. contig coverage: 1.56
Consensus contains:	A: 185	C: 132	G: 117	T: 167	N: 0
			IUPAC: 3	Funny: 0	*: 1

Num reads: 3
Avg. read length: 315
Reads contain 941 bases, 0 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 216
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1307
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 216
Contig length: 602
Avg. contig coverage: 1.63
Consensus contains:	A: 158	C: 147	G: 123	T: 164	N: 1
			IUPAC: 6	Funny: 0	*: 3

Num reads: 2
Avg. read length: 492
Reads contain 981 bases, 1 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 217
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1305
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 217
Contig length: 476
Avg. contig coverage: 1.85
Consensus contains:	A: 111	C: 119	G: 113	T: 129	N: 0
			IUPAC: 2	Funny: 0	*: 2

Num reads: 2
Avg. read length: 442
Reads contain 881 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 218
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1303
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 218
Contig length: 315
Avg. contig coverage: 1.86
Consensus contains:	A: 74	C: 79	G: 94	T: 66	N: 0
			IUPAC: 0	Funny: 0	*: 2

Num reads: 2
Avg. read length: 294
Reads contain 585 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 219
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1301
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 219
Contig length: 475
Avg. contig coverage: 1.76
Consensus contains:	A: 125	C: 101	G: 140	T: 106	N: 0
			IUPAC: 3	Funny: 0	*: 0

Num reads: 2
Avg. read length: 419
Reads contain 836 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 220
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1299
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 220
Contig length: 612
Avg. contig coverage: 1.37
Consensus contains:	A: 154	C: 168	G: 130	T: 160	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 3
Avg. read length: 281
Reads contain 844 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 221
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1296
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 221
Contig length: 619
Avg. contig coverage: 1.62
Consensus contains:	A: 146	C: 142	G: 161	T: 155	N: 0
			IUPAC: 15	Funny: 0	*: 0

Num reads: 2
Avg. read length: 504
Reads contain 1007 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 222
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1294
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 222
Contig length: 538
Avg. contig coverage: 1.77
Consensus contains:	A: 153	C: 112	G: 132	T: 120	N: 0
			IUPAC: 18	Funny: 0	*: 3

Num reads: 2
Avg. read length: 477
Reads contain 949 bases, 0 Ns and 6 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 223
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1292
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 223
Contig length: 491
Avg. contig coverage: 1.51
Consensus contains:	A: 135	C: 144	G: 108	T: 98	N: 3
			IUPAC: 1	Funny: 0	*: 2

Num reads: 2
Avg. read length: 371
Reads contain 737 bases, 4 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 224
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1290
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 224
Contig length: 842
Avg. contig coverage: 1.27
Consensus contains:	A: 260	C: 172	G: 170	T: 240	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 537
Reads contain 1074 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 225
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1288
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 225
Contig length: 385
Avg. contig coverage: 1.74
Consensus contains:	A: 114	C: 103	G: 76	T: 90	N: 0
			IUPAC: 1	Funny: 0	*: 1

Num reads: 2
Avg. read length: 336
Reads contain 671 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 226
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1286
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 226
Contig length: 275
Avg. contig coverage: 1.83
Consensus contains:	A: 101	C: 60	G: 57	T: 56	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 252
Reads contain 504 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 227
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1284
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 227
Contig length: 354
Avg. contig coverage: 1.62
Consensus contains:	A: 91	C: 69	G: 85	T: 109	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 287
Reads contain 574 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 228
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1282
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 228
Contig length: 522
Avg. contig coverage: 1.41
Consensus contains:	A: 141	C: 106	G: 120	T: 155	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 370
Reads contain 741 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 229
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1280
+[1] a+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 229
Contig length: 393
Avg. contig coverage: 1.26
Consensus contains:	A: 132	C: 88	G: 71	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 249
Reads contain 498 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 230
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1278
+[1] p
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 230
Contig length: 253
Avg. contig coverage: 1
Consensus contains:	A: 62	C: 52	G: 75	T: 64	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 253
Reads contain 253 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 231
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1277
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 231
Contig length: 523
Avg. contig coverage: 1.97
Consensus contains:	A: 157	C: 61	G: 124	T: 166	N: 0
			IUPAC: 11	Funny: 0	*: 4

Num reads: 2
Avg. read length: 517
Reads contain 1026 bases, 0 Ns and 8 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 232
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1275
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 232
Contig length: 393
Avg. contig coverage: 1.57
Consensus contains:	A: 113	C: 103	G: 82	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 2

Num reads: 2
Avg. read length: 309
Reads contain 617 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 233
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1273
+[1] +++++rrr
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 233
Contig length: 626
Avg. contig coverage: 2.96
Consensus contains:	A: 138	C: 166	G: 160	T: 137	N: 0
			IUPAC: 21	Funny: 0	*: 4

Num reads: 6
Avg. read length: 309
Reads contain 1836 bases, 0 Ns and 18 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 234
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1267
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 234
Contig length: 299
Avg. contig coverage: 1.69
Consensus contains:	A: 102	C: 82	G: 36	T: 78	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 254
Reads contain 507 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 235
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1265
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 235
Contig length: 443
Avg. contig coverage: 1.73
Consensus contains:	A: 131	C: 111	G: 89	T: 110	N: 0
			IUPAC: 0	Funny: 0	*: 2

Num reads: 2
Avg. read length: 384
Reads contain 766 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 236
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1263
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 236
Contig length: 731
Avg. contig coverage: 1.36
Consensus contains:	A: 186	C: 164	G: 176	T: 200	N: 0
			IUPAC: 3	Funny: 0	*: 2

Num reads: 2
Avg. read length: 500
Reads contain 996 bases, 0 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 237
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1261
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 237
Contig length: 373
Avg. contig coverage: 1.53
Consensus contains:	A: 150	C: 86	G: 37	T: 100	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 286
Reads contain 573 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 238
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1259
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 238
Contig length: 461
Avg. contig coverage: 1.93
Consensus contains:	A: 145	C: 93	G: 102	T: 103	N: 0
			IUPAC: 14	Funny: 0	*: 4

Num reads: 2
Avg. read length: 446
Reads contain 888 bases, 0 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 239
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1257
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 239
Contig length: 486
Avg. contig coverage: 1.42
Consensus contains:	A: 146	C: 91	G: 129	T: 116	N: 3
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 346
Reads contain 690 bases, 3 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 240
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1255
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 240
Contig length: 448
Avg. contig coverage: 1.42
Consensus contains:	A: 136	C: 82	G: 77	T: 153	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 318
Reads contain 637 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 241
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1253
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 241
Contig length: 518
Avg. contig coverage: 1.81
Consensus contains:	A: 164	C: 86	G: 131	T: 118	N: 0
			IUPAC: 15	Funny: 0	*: 4

Num reads: 2
Avg. read length: 470
Reads contain 934 bases, 0 Ns and 6 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 242
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1251
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 242
Contig length: 307
Avg. contig coverage: 1.93
Consensus contains:	A: 91	C: 95	G: 54	T: 64	N: 1
			IUPAC: 0	Funny: 0	*: 2

Num reads: 3
Avg. read length: 197
Reads contain 588 bases, 1 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 243
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1248
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 243
Contig length: 451
Avg. contig coverage: 1.64
Consensus contains:	A: 122	C: 115	G: 111	T: 100	N: 0
			IUPAC: 2	Funny: 0	*: 1

Num reads: 2
Avg. read length: 370
Reads contain 740 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 244
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1246
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 244
Contig length: 390
Avg. contig coverage: 1.49
Consensus contains:	A: 76	C: 106	G: 109	T: 97	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 2
Avg. read length: 291
Reads contain 582 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 245
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1244
+[1] ++a
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 245
Contig length: 435
Avg. contig coverage: 1.98
Consensus contains:	A: 104	C: 94	G: 123	T: 91	N: 0
			IUPAC: 23	Funny: 0	*: 0

Num reads: 3
Avg. read length: 288
Reads contain 861 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 246
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1241
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 246
Contig length: 496
Avg. contig coverage: 1.43
Consensus contains:	A: 158	C: 121	G: 106	T: 109	N: 0
			IUPAC: 0	Funny: 0	*: 2

Num reads: 2
Avg. read length: 356
Reads contain 709 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 247
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1239
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 247
Contig length: 388
Avg. contig coverage: 2.15
Consensus contains:	A: 99	C: 111	G: 93	T: 77	N: 0
			IUPAC: 5	Funny: 0	*: 3

Num reads: 3
Avg. read length: 278
Reads contain 826 bases, 0 Ns and 9 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 248
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1236
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 248
Contig length: 507
Avg. contig coverage: 1.42
Consensus contains:	A: 149	C: 119	G: 102	T: 132	N: 0
			IUPAC: 3	Funny: 0	*: 2

Num reads: 2
Avg. read length: 360
Reads contain 716 bases, 2 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 249
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1234
+[1] +a
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 249
Contig length: 642
Avg. contig coverage: 1.42
Consensus contains:	A: 176	C: 144	G: 154	T: 159	N: 3
			IUPAC: 5	Funny: 0	*: 1

Num reads: 2
Avg. read length: 457
Reads contain 908 bases, 3 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 250
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1232
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 250
Contig length: 303
Avg. contig coverage: 1.98
Consensus contains:	A: 85	C: 37	G: 105	T: 74	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 2
Avg. read length: 300
Reads contain 597 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 251
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1230
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 251
Contig length: 486
Avg. contig coverage: 1.61
Consensus contains:	A: 117	C: 133	G: 105	T: 122	N: 0
			IUPAC: 3	Funny: 0	*: 6

Num reads: 2
Avg. read length: 392
Reads contain 778 bases, 0 Ns and 7 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 252
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1228
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 252
Contig length: 564
Avg. contig coverage: 1.74
Consensus contains:	A: 112	C: 150	G: 120	T: 151	N: 2
			IUPAC: 29	Funny: 0	*: 0

Num reads: 2
Avg. read length: 492
Reads contain 978 bases, 4 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 253
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1226
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 253
Contig length: 816
Avg. contig coverage: 1.33
Consensus contains:	A: 195	C: 189	G: 234	T: 192	N: 0
			IUPAC: 2	Funny: 0	*: 4

Num reads: 2
Avg. read length: 545
Reads contain 1086 bases, 0 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 254
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1224
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 254
Contig length: 764
Avg. contig coverage: 1.21
Consensus contains:	A: 209	C: 158	G: 184	T: 213	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 465
Reads contain 931 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 255
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1222
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 255
Contig length: 519
Avg. contig coverage: 1.31
Consensus contains:	A: 125	C: 133	G: 131	T: 130	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 342
Reads contain 685 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 256
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1220
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 256
Contig length: 459
Avg. contig coverage: 1
Consensus contains:	A: 129	C: 107	G: 113	T: 110	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 459
Reads contain 459 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 257
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1219
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 257
Contig length: 479
Avg. contig coverage: 1.46
Consensus contains:	A: 94	C: 91	G: 142	T: 149	N: 0
			IUPAC: 3	Funny: 0	*: 0

Num reads: 2
Avg. read length: 352
Reads contain 703 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 258
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1217
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 258
Contig length: 430
Avg. contig coverage: 1.92
Consensus contains:	A: 82	C: 106	G: 120	T: 119	N: 1
			IUPAC: 1	Funny: 0	*: 1

Num reads: 2
Avg. read length: 414
Reads contain 824 bases, 1 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 259
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1215
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 259
Contig length: 708
Avg. contig coverage: 1.24
Consensus contains:	A: 167	C: 119	G: 211	T: 211	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 439
Reads contain 879 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 260
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1213
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 260
Contig length: 238
Avg. contig coverage: 1.88
Consensus contains:	A: 69	C: 80	G: 38	T: 51	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 224
Reads contain 449 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 261
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1211
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 261
Contig length: 375
Avg. contig coverage: 1.48
Consensus contains:	A: 102	C: 74	G: 91	T: 106	N: 0
			IUPAC: 1	Funny: 0	*: 1

Num reads: 2
Avg. read length: 277
Reads contain 554 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 262
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1209
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 262
Contig length: 412
Avg. contig coverage: 1.51
Consensus contains:	A: 97	C: 85	G: 117	T: 111	N: 0
			IUPAC: 1	Funny: 0	*: 1

Num reads: 2
Avg. read length: 312
Reads contain 622 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 263
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1207
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 263
Contig length: 561
Avg. contig coverage: 1.31
Consensus contains:	A: 175	C: 132	G: 90	T: 164	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 367
Reads contain 735 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 264
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1205
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 264
Contig length: 223
Avg. contig coverage: 1.73
Consensus contains:	A: 56	C: 35	G: 73	T: 58	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 193
Reads contain 386 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 265
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1203
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 265
Contig length: 275
Avg. contig coverage: 1.78
Consensus contains:	A: 76	C: 63	G: 53	T: 80	N: 0
			IUPAC: 1	Funny: 0	*: 2

Num reads: 2
Avg. read length: 245
Reads contain 489 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 266
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1201
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 266
Contig length: 847
Avg. contig coverage: 1.39
Consensus contains:	A: 225	C: 187	G: 178	T: 244	N: 0
			IUPAC: 11	Funny: 0	*: 2

Num reads: 3
Avg. read length: 393
Reads contain 1174 bases, 2 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 267
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1198
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 267
Contig length: 429
Avg. contig coverage: 1.36
Consensus contains:	A: 145	C: 89	G: 74	T: 121	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 292
Reads contain 585 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 268
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1196
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 268
Contig length: 473
Avg. contig coverage: 1.51
Consensus contains:	A: 115	C: 117	G: 115	T: 120	N: 0
			IUPAC: 3	Funny: 0	*: 3

Num reads: 2
Avg. read length: 357
Reads contain 712 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 269
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1194
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 269
Contig length: 379
Avg. contig coverage: 1.92
Consensus contains:	A: 94	C: 88	G: 89	T: 94	N: 0
			IUPAC: 12	Funny: 0	*: 2

Num reads: 2
Avg. read length: 365
Reads contain 723 bases, 1 Ns and 6 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 270
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1192
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 270
Contig length: 322
Avg. contig coverage: 1.9
Consensus contains:	A: 67	C: 79	G: 85	T: 51	N: 0
			IUPAC: 38	Funny: 0	*: 2

Num reads: 2
Avg. read length: 307
Reads contain 610 bases, 0 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 271
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1190
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 271
Contig length: 531
Avg. contig coverage: 1.4
Consensus contains:	A: 142	C: 103	G: 106	T: 173	N: 0
			IUPAC: 6	Funny: 0	*: 1

Num reads: 2
Avg. read length: 373
Reads contain 745 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 272
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1188
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 272
Contig length: 539
Avg. contig coverage: 1.31
Consensus contains:	A: 131	C: 157	G: 138	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 355
Reads contain 710 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 273
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1186
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 273
Contig length: 448
Avg. contig coverage: 1.51
Consensus contains:	A: 118	C: 84	G: 110	T: 121	N: 0
			IUPAC: 14	Funny: 0	*: 1

Num reads: 2
Avg. read length: 339
Reads contain 678 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 274
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1184
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 274
Contig length: 510
Avg. contig coverage: 1.53
Consensus contains:	A: 158	C: 97	G: 115	T: 138	N: 1
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 391
Reads contain 782 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 275
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1182
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 275
Contig length: 501
Avg. contig coverage: 1.83
Consensus contains:	A: 140	C: 129	G: 78	T: 128	N: 0
			IUPAC: 22	Funny: 0	*: 4

Num reads: 2
Avg. read length: 460
Reads contain 913 bases, 0 Ns and 7 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 276
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1180
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 276
Contig length: 396
Avg. contig coverage: 1.42
Consensus contains:	A: 87	C: 84	G: 123	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 283
Reads contain 566 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 277
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1178
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 277
Contig length: 254
Avg. contig coverage: 1.56
Consensus contains:	A: 49	C: 42	G: 83	T: 80	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 198
Reads contain 397 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 278
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1176
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 278
Contig length: 623
Avg. contig coverage: 1.67
Consensus contains:	A: 179	C: 150	G: 127	T: 150	N: 0
			IUPAC: 12	Funny: 0	*: 5

Num reads: 2
Avg. read length: 520
Reads contain 1031 bases, 1 Ns and 9 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 279
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1174
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 279
Contig length: 269
Avg. contig coverage: 1.78
Consensus contains:	A: 103	C: 59	G: 47	T: 59	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 240
Reads contain 479 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 280
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1172
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 280
Contig length: 196
Avg. contig coverage: 1
Consensus contains:	A: 53	C: 47	G: 49	T: 47	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 196
Reads contain 196 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 281
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1171
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 281
Contig length: 214
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 37	G: 13	T: 66	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 214
Reads contain 214 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 282
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1170
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 282
Contig length: 509
Avg. contig coverage: 1.3
Consensus contains:	A: 139	C: 114	G: 119	T: 136	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 333
Reads contain 666 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 283
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1168
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 283
Contig length: 313
Avg. contig coverage: 1.47
Consensus contains:	A: 111	C: 56	G: 66	T: 80	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 231
Reads contain 463 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 284
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1166
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 284
Contig length: 344
Avg. contig coverage: 1.54
Consensus contains:	A: 106	C: 83	G: 74	T: 80	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 266
Reads contain 531 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 285
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1164
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 285
Contig length: 319
Avg. contig coverage: 1.66
Consensus contains:	A: 115	C: 64	G: 55	T: 72	N: 0
			IUPAC: 13	Funny: 0	*: 0

Num reads: 2
Avg. read length: 266
Reads contain 532 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 286
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1162
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 286
Contig length: 562
Avg. contig coverage: 1.59
Consensus contains:	A: 144	C: 119	G: 148	T: 144	N: 0
			IUPAC: 4	Funny: 0	*: 3

Num reads: 2
Avg. read length: 447
Reads contain 891 bases, 0 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 287
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1160
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 287
Contig length: 850
Avg. contig coverage: 1.19
Consensus contains:	A: 230	C: 153	G: 219	T: 248	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 509
Reads contain 1017 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 288
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1158
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 288
Contig length: 276
Avg. contig coverage: 1.27
Consensus contains:	A: 73	C: 58	G: 86	T: 56	N: 0
			IUPAC: 3	Funny: 0	*: 0

Num reads: 2
Avg. read length: 176
Reads contain 352 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 289
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1156
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 289
Contig length: 443
Avg. contig coverage: 1
Consensus contains:	A: 164	C: 91	G: 71	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 443
Reads contain 443 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 290
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1155
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 290
Contig length: 364
Avg. contig coverage: 1
Consensus contains:	A: 113	C: 84	G: 78	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 364
Reads contain 364 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 291
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1154
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 291
Contig length: 460
Avg. contig coverage: 1.4
Consensus contains:	A: 107	C: 91	G: 139	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 323
Reads contain 647 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 292
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1152
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 292
Contig length: 341
Avg. contig coverage: 1.95
Consensus contains:	A: 91	C: 94	G: 58	T: 88	N: 0
			IUPAC: 3	Funny: 0	*: 7

Num reads: 2
Avg. read length: 332
Reads contain 656 bases, 0 Ns and 9 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 293
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1150
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 293
Contig length: 433
Avg. contig coverage: 1.66
Consensus contains:	A: 113	C: 56	G: 115	T: 134	N: 0
			IUPAC: 5	Funny: 0	*: 10

Num reads: 2
Avg. read length: 360
Reads contain 708 bases, 2 Ns and 10 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 294
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1148
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 294
Contig length: 560
Avg. contig coverage: 1.4
Consensus contains:	A: 181	C: 135	G: 112	T: 119	N: 1
			IUPAC: 11	Funny: 0	*: 1

Num reads: 2
Avg. read length: 392
Reads contain 780 bases, 1 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 295
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1146
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 295
Contig length: 533
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 130	G: 142	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 533
Reads contain 533 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 296
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1145
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 296
Contig length: 182
Avg. contig coverage: 1
Consensus contains:	A: 44	C: 35	G: 60	T: 43	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 182
Reads contain 182 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 297
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1144
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 297
Contig length: 331
Avg. contig coverage: 1
Consensus contains:	A: 87	C: 64	G: 88	T: 92	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 331
Reads contain 331 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 298
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1143
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 298
Contig length: 334
Avg. contig coverage: 1.45
Consensus contains:	A: 77	C: 49	G: 120	T: 87	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 243
Reads contain 486 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 299
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1141
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 299
Contig length: 213
Avg. contig coverage: 1.55
Consensus contains:	A: 59	C: 98	G: 24	T: 32	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 165
Reads contain 331 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 300
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1139
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 300
Contig length: 328
Avg. contig coverage: 1.34
Consensus contains:	A: 97	C: 74	G: 67	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 221
Reads contain 442 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 301
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1137
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 301
Contig length: 578
Avg. contig coverage: 1
Consensus contains:	A: 169	C: 135	G: 101	T: 170	N: 3
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 578
Reads contain 575 bases, 3 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 302
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1136
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 302
Contig length: 733
Avg. contig coverage: 1.29
Consensus contains:	A: 230	C: 211	G: 138	T: 142	N: 1
			IUPAC: 7	Funny: 0	*: 4

Num reads: 3
Avg. read length: 316
Reads contain 943 bases, 1 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 303
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1133
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 303
Contig length: 274
Avg. contig coverage: 1.5
Consensus contains:	A: 38	C: 90	G: 69	T: 75	N: 0
			IUPAC: 0	Funny: 0	*: 2

Num reads: 2
Avg. read length: 206
Reads contain 410 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 304
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1131
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 304
Contig length: 587
Avg. contig coverage: 1.44
Consensus contains:	A: 150	C: 147	G: 115	T: 166	N: 0
			IUPAC: 6	Funny: 0	*: 3

Num reads: 2
Avg. read length: 425
Reads contain 844 bases, 0 Ns and 7 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 305
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1129
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 305
Contig length: 632
Avg. contig coverage: 1.43
Consensus contains:	A: 164	C: 154	G: 120	T: 169	N: 1
			IUPAC: 22	Funny: 0	*: 2

Num reads: 2
Avg. read length: 452
Reads contain 898 bases, 1 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 306
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1127
+[1] +p
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 306
Contig length: 439
Avg. contig coverage: 1.67
Consensus contains:	A: 93	C: 106	G: 101	T: 111	N: 0
			IUPAC: 28	Funny: 0	*: 0

Num reads: 2
Avg. read length: 367
Reads contain 734 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 307
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1125
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 307
Contig length: 457
Avg. contig coverage: 1
Consensus contains:	A: 149	C: 104	G: 80	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 457
Reads contain 457 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 308
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1124
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 308
Contig length: 481
Avg. contig coverage: 1.64
Consensus contains:	A: 106	C: 121	G: 126	T: 115	N: 0
			IUPAC: 7	Funny: 0	*: 6

Num reads: 3
Avg. read length: 263
Reads contain 779 bases, 1 Ns and 10 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 309
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1121
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 309
Contig length: 541
Avg. contig coverage: 1.36
Consensus contains:	A: 131	C: 121	G: 142	T: 140	N: 0
			IUPAC: 4	Funny: 0	*: 3

Num reads: 2
Avg. read length: 370
Reads contain 737 bases, 0 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 310
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1119
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 310
Contig length: 700
Avg. contig coverage: 1.14
Consensus contains:	A: 202	C: 170	G: 117	T: 211	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 400
Reads contain 800 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 311
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1117
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 311
Contig length: 985
Avg. contig coverage: 1.11
Consensus contains:	A: 252	C: 249	G: 248	T: 236	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 551
Reads contain 1101 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 312
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1115
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 312
Contig length: 695
Avg. contig coverage: 1.22
Consensus contains:	A: 158	C: 164	G: 170	T: 201	N: 0
			IUPAC: 1	Funny: 0	*: 1

Num reads: 2
Avg. read length: 424
Reads contain 846 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 313
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1113
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 313
Contig length: 199
Avg. contig coverage: 1.87
Consensus contains:	A: 46	C: 50	G: 52	T: 49	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 2
Avg. read length: 186
Reads contain 373 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 314
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1111
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 314
Contig length: 442
Avg. contig coverage: 1.26
Consensus contains:	A: 125	C: 62	G: 86	T: 169	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 278
Reads contain 557 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 315
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1109
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 315
Contig length: 446
Avg. contig coverage: 1.21
Consensus contains:	A: 114	C: 100	G: 123	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 272
Reads contain 542 bases, 1 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 316
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1107
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 316
Contig length: 625
Avg. contig coverage: 1.3
Consensus contains:	A: 166	C: 126	G: 156	T: 167	N: 1
			IUPAC: 9	Funny: 0	*: 0

Num reads: 2
Avg. read length: 408
Reads contain 816 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 317
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1105
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 317
Contig length: 354
Avg. contig coverage: 1.37
Consensus contains:	A: 119	C: 67	G: 70	T: 94	N: 0
			IUPAC: 3	Funny: 0	*: 1

Num reads: 2
Avg. read length: 243
Reads contain 484 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 318
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1103
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 318
Contig length: 821
Avg. contig coverage: 1.3
Consensus contains:	A: 226	C: 175	G: 175	T: 226	N: 1
			IUPAC: 15	Funny: 0	*: 3

Num reads: 2
Avg. read length: 535
Reads contain 1067 bases, 1 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 319
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1101
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 319
Contig length: 623
Avg. contig coverage: 1.13
Consensus contains:	A: 208	C: 147	G: 134	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 353
Reads contain 707 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 320
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1099
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 320
Contig length: 201
Avg. contig coverage: 1
Consensus contains:	A: 56	C: 53	G: 57	T: 35	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 201
Reads contain 201 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 321
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1098
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 321
Contig length: 394
Avg. contig coverage: 1.56
Consensus contains:	A: 101	C: 58	G: 136	T: 95	N: 0
			IUPAC: 1	Funny: 0	*: 3

Num reads: 2
Avg. read length: 309
Reads contain 614 bases, 0 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 322
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1096
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 322
Contig length: 645
Avg. contig coverage: 1.35
Consensus contains:	A: 164	C: 173	G: 136	T: 153	N: 0
			IUPAC: 18	Funny: 0	*: 1

Num reads: 2
Avg. read length: 435
Reads contain 867 bases, 0 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 323
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1094
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 323
Contig length: 504
Avg. contig coverage: 1.36
Consensus contains:	A: 113	C: 117	G: 132	T: 132	N: 0
			IUPAC: 10	Funny: 0	*: 0

Num reads: 2
Avg. read length: 344
Reads contain 687 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 324
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1092
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 324
Contig length: 309
Avg. contig coverage: 1.37
Consensus contains:	A: 90	C: 64	G: 72	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 212
Reads contain 425 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 325
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1090
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 325
Contig length: 384
Avg. contig coverage: 1.39
Consensus contains:	A: 136	C: 90	G: 66	T: 88	N: 0
			IUPAC: 2	Funny: 0	*: 2

Num reads: 2
Avg. read length: 268
Reads contain 534 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 326
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1088
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 326
Contig length: 471
Avg. contig coverage: 1.5
Consensus contains:	A: 149	C: 88	G: 117	T: 102	N: 0
			IUPAC: 10	Funny: 0	*: 5

Num reads: 2
Avg. read length: 354
Reads contain 702 bases, 1 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 327
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1086
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 327
Contig length: 503
Avg. contig coverage: 1.27
Consensus contains:	A: 145	C: 101	G: 114	T: 137	N: 0
			IUPAC: 5	Funny: 0	*: 1

Num reads: 2
Avg. read length: 321
Reads contain 640 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 328
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1084
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 328
Contig length: 278
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 64	G: 35	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 278
Reads contain 278 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 329
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1083
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 329
Contig length: 249
Avg. contig coverage: 1.62
Consensus contains:	A: 78	C: 59	G: 71	T: 31	N: 0
			IUPAC: 7	Funny: 0	*: 3

Num reads: 2
Avg. read length: 202
Reads contain 402 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 330
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1081
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 330
Contig length: 492
Avg. contig coverage: 1.38
Consensus contains:	A: 118	C: 134	G: 96	T: 129	N: 0
			IUPAC: 15	Funny: 0	*: 0

Num reads: 2
Avg. read length: 341
Reads contain 680 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 331
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1079
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 331
Contig length: 215
Avg. contig coverage: 1
Consensus contains:	A: 48	C: 65	G: 51	T: 51	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 215
Reads contain 215 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 332
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1078
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 332
Contig length: 287
Avg. contig coverage: 1.3
Consensus contains:	A: 54	C: 75	G: 62	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 187
Reads contain 374 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 333
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1076
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 333
Contig length: 396
Avg. contig coverage: 1.34
Consensus contains:	A: 102	C: 98	G: 84	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 266
Reads contain 531 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 334
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1074
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 334
Contig length: 370
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 80	G: 63	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 370
Reads contain 370 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 335
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1073
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 335
Contig length: 284
Avg. contig coverage: 1
Consensus contains:	A: 68	C: 70	G: 67	T: 77	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 284
Reads contain 282 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 336
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1072
+[1] +++rrr+++++r
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 336
Contig length: 739
Avg. contig coverage: 4.97
Consensus contains:	A: 163	C: 178	G: 169	T: 169	N: 0
			IUPAC: 53	Funny: 0	*: 7

Num reads: 9
Avg. read length: 408
Reads contain 3650 bases, 1 Ns and 29 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 30 Strong RMB
 - 1 Weak RMB
 - 0 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering tags to readpool.

The previously assembled contig had grave misassemblies, rebuilding contig 336 now.
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1072
+[1] ppppppp+pppppp+p
RL1
[3] pThat's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 336
Contig length: 729
Avg. contig coverage: 1.72
Consensus contains:	A: 163	C: 176	G: 176	T: 168	N: 1
			IUPAC: 42	Funny: 0	*: 3

Num reads: 3
Avg. read length: 419
Reads contain 1253 bases, 1 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 337
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1069
+[1] +ppppp
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 337
Contig length: 607
Avg. contig coverage: 1.62
Consensus contains:	A: 150	C: 143	G: 160	T: 153	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 493
Reads contain 986 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 338
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1067
+[1] ++p
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 338
Contig length: 401
Avg. contig coverage: 2.66
Consensus contains:	A: 102	C: 109	G: 100	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 3
Avg. read length: 355
Reads contain 1064 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 339
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1064
+[1] +a++ara++ra
RL1
[6] aThat's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 339
Contig length: 615
Avg. contig coverage: 3.71
Consensus contains:	A: 128	C: 124	G: 162	T: 152	N: 0
			IUPAC: 44	Funny: 0	*: 5

Num reads: 6
Avg. read length: 380
Reads contain 2256 bases, 6 Ns and 23 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 2 Strong RMB
 - 0 Weak RMB
 - 0 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering tags to readpool.

The previously assembled contig had grave misassemblies, rebuilding contig 339 now.
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1064
+[1] +apap+pp+raa
RL1
[4] ppThat's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 339
Contig length: 613
Avg. contig coverage: 2.75
Consensus contains:	A: 131	C: 129	G: 164	T: 159	N: 0
			IUPAC: 27	Funny: 0	*: 3

Num reads: 4
Avg. read length: 422
Reads contain 1670 bases, 4 Ns and 15 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 340
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1060
+[1] pp+pp
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 340
Contig length: 492
Avg. contig coverage: 1.33
Consensus contains:	A: 96	C: 142	G: 116	T: 137	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 328
Reads contain 657 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 341
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1058
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 341
Contig length: 493
Avg. contig coverage: 1.51
Consensus contains:	A: 97	C: 145	G: 115	T: 135	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 374
Reads contain 746 bases, 1 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 342
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1056
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 342
Contig length: 462
Avg. contig coverage: 2.94
Consensus contains:	A: 101	C: 104	G: 120	T: 134	N: 0
			IUPAC: 2	Funny: 0	*: 1

Num reads: 3
Avg. read length: 453
Reads contain 1358 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 343
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1053
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 343
Contig length: 410
Avg. contig coverage: 1
Consensus contains:	A: 96	C: 100	G: 107	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 410
Reads contain 410 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 344
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1052
+[1] ++++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 344
Contig length: 622
Avg. contig coverage: 3.07
Consensus contains:	A: 165	C: 162	G: 128	T: 131	N: 0
			IUPAC: 31	Funny: 0	*: 5

Num reads: 5
Avg. read length: 382
Reads contain 1890 bases, 3 Ns and 18 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 345
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1047
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 345
Contig length: 407
Avg. contig coverage: 1.92
Consensus contains:	A: 103	C: 103	G: 88	T: 107	N: 0
			IUPAC: 5	Funny: 0	*: 1

Num reads: 2
Avg. read length: 392
Reads contain 783 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 346
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1045
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 346
Contig length: 616
Avg. contig coverage: 1
Consensus contains:	A: 178	C: 144	G: 155	T: 138	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 616
Reads contain 615 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 347
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1044
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 347
Contig length: 359
Avg. contig coverage: 1
Consensus contains:	A: 87	C: 83	G: 96	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 359
Reads contain 359 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 348
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1043
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 348
Contig length: 482
Avg. contig coverage: 2.37
Consensus contains:	A: 99	C: 131	G: 103	T: 148	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 3
Avg. read length: 381
Reads contain 1143 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 349
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1040
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 349
Contig length: 485
Avg. contig coverage: 2.24
Consensus contains:	A: 146	C: 100	G: 109	T: 124	N: 0
			IUPAC: 4	Funny: 0	*: 2

Num reads: 3
Avg. read length: 362
Reads contain 1083 bases, 0 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 350
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1037
+[1] ++a
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 350
Contig length: 384
Avg. contig coverage: 2.87
Consensus contains:	A: 96	C: 90	G: 90	T: 88	N: 0
			IUPAC: 19	Funny: 0	*: 1

Num reads: 3
Avg. read length: 367
Reads contain 1094 bases, 1 Ns and 8 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 351
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1034
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 351
Contig length: 429
Avg. contig coverage: 1
Consensus contains:	A: 100	C: 116	G: 96	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 429
Reads contain 429 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 352
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1033
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 352
Contig length: 493
Avg. contig coverage: 1
Consensus contains:	A: 136	C: 116	G: 124	T: 116	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 493
Reads contain 492 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 353
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1032
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 353
Contig length: 392
Avg. contig coverage: 1.98
Consensus contains:	A: 118	C: 65	G: 87	T: 121	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 389
Reads contain 775 bases, 1 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 354
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1030
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 354
Contig length: 248
Avg. contig coverage: 1
Consensus contains:	A: 77	C: 51	G: 70	T: 50	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 248
Reads contain 248 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 355
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1029
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 355
Contig length: 461
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 98	G: 118	T: 131	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 461
Reads contain 461 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 356
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1028
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 356
Contig length: 573
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 123	G: 146	T: 165	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 573
Reads contain 573 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 357
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1027
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 357
Contig length: 445
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 90	G: 135	T: 109	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 445
Reads contain 444 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 358
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1026
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 358
Contig length: 371
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 88	G: 75	T: 106	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 371
Reads contain 370 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 359
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1025
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 359
Contig length: 436
Avg. contig coverage: 1
Consensus contains:	A: 148	C: 96	G: 59	T: 133	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 436
Reads contain 436 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 360
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1024
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 360
Contig length: 475
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 119	G: 85	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 475
Reads contain 475 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 361
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1023
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 361
Contig length: 318
Avg. contig coverage: 1
Consensus contains:	A: 67	C: 90	G: 80	T: 81	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 318
Reads contain 318 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 362
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1022
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 362
Contig length: 340
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 94	G: 66	T: 97	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 340
Reads contain 339 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 363
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1021
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 363
Contig length: 530
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 108	G: 140	T: 150	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 530
Reads contain 530 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 364
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1020
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 364
Contig length: 348
Avg. contig coverage: 1
Consensus contains:	A: 129	C: 71	G: 68	T: 80	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 348
Reads contain 348 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 365
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1019
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 365
Contig length: 142
Avg. contig coverage: 1
Consensus contains:	A: 37	C: 24	G: 32	T: 49	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 142
Reads contain 142 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 366
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1018
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 366
Contig length: 512
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 139	G: 95	T: 176	N: 3
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 512
Reads contain 509 bases, 3 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 367
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1017
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 367
Contig length: 474
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 127	G: 129	T: 113	N: 4
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 474
Reads contain 470 bases, 4 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 368
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1016
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 368
Contig length: 551
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 118	G: 136	T: 134	N: 7
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 551
Reads contain 544 bases, 7 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 369
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1015
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 369
Contig length: 394
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 100	G: 66	T: 124	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 394
Reads contain 393 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 370
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1014
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 370
Contig length: 362
Avg. contig coverage: 1
Consensus contains:	A: 92	C: 88	G: 68	T: 114	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 362
Reads contain 362 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 371
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1013
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 371
Contig length: 465
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 140	G: 97	T: 121	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 465
Reads contain 464 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 372
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1012
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 372
Contig length: 265
Avg. contig coverage: 1
Consensus contains:	A: 81	C: 46	G: 64	T: 73	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 265
Reads contain 264 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 373
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1011
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 373
Contig length: 503
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 116	G: 114	T: 148	N: 3
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 503
Reads contain 500 bases, 3 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 374
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1010
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 374
Contig length: 412
Avg. contig coverage: 1
Consensus contains:	A: 152	C: 98	G: 70	T: 92	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 412
Reads contain 412 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 375
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1009
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 375
Contig length: 275
Avg. contig coverage: 1
Consensus contains:	A: 61	C: 60	G: 53	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 275
Reads contain 275 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 376
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1008
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 376
Contig length: 317
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 50	G: 79	T: 98	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 317
Reads contain 317 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 377
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1007
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 377
Contig length: 592
Avg. contig coverage: 1
Consensus contains:	A: 161	C: 138	G: 126	T: 162	N: 5
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 592
Reads contain 587 bases, 5 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 378
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1006
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 378
Contig length: 310
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 55	G: 35	T: 97	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 310
Reads contain 309 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 379
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1005
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 379
Contig length: 558
Avg. contig coverage: 1
Consensus contains:	A: 155	C: 139	G: 101	T: 163	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 558
Reads contain 558 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 380
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1004
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 380
Contig length: 508
Avg. contig coverage: 1
Consensus contains:	A: 140	C: 109	G: 134	T: 124	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 508
Reads contain 507 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 381
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1003
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 381
Contig length: 585
Avg. contig coverage: 1
Consensus contains:	A: 167	C: 162	G: 94	T: 159	N: 3
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 585
Reads contain 582 bases, 3 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 382
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1002
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 382
Contig length: 355
Avg. contig coverage: 1
Consensus contains:	A: 95	C: 92	G: 67	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 355
Reads contain 355 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 383
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1001
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 383
Contig length: 299
Avg. contig coverage: 1
Consensus contains:	A: 56	C: 67	G: 50	T: 125	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 299
Reads contain 298 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 384
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1000
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 384
Contig length: 453
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 100	G: 120	T: 108	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 453
Reads contain 452 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 385
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 999
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 385
Contig length: 530
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 124	G: 160	T: 116	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 530
Reads contain 528 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 386
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 998
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 386
Contig length: 477
Avg. contig coverage: 1
Consensus contains:	A: 140	C: 137	G: 99	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 477
Reads contain 477 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 387
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 997
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 387
Contig length: 577
Avg. contig coverage: 1
Consensus contains:	A: 159	C: 159	G: 127	T: 131	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 577
Reads contain 576 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 388
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 996
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 388
Contig length: 446
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 89	G: 85	T: 128	N: 3
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 446
Reads contain 443 bases, 3 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 389
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 995
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 389
Contig length: 243
Avg. contig coverage: 1
Consensus contains:	A: 59	C: 65	G: 67	T: 52	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 243
Reads contain 243 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 390
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 994
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 390
Contig length: 530
Avg. contig coverage: 1
Consensus contains:	A: 148	C: 100	G: 128	T: 153	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 530
Reads contain 529 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 391
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 993
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 391
Contig length: 428
Avg. contig coverage: 1
Consensus contains:	A: 115	C: 73	G: 138	T: 101	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 428
Reads contain 427 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 392
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 992
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 392
Contig length: 555
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 160	G: 95	T: 161	N: 8
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 555
Reads contain 547 bases, 8 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 393
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 991
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 393
Contig length: 480
Avg. contig coverage: 1
Consensus contains:	A: 129	C: 103	G: 123	T: 125	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 480
Reads contain 480 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 394
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 990
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 394
Contig length: 370
Avg. contig coverage: 1
Consensus contains:	A: 123	C: 86	G: 64	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 370
Reads contain 370 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 395
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 989
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 395
Contig length: 386
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 108	G: 56	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 386
Reads contain 386 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 396
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 988
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 396
Contig length: 577
Avg. contig coverage: 1
Consensus contains:	A: 165	C: 137	G: 116	T: 155	N: 4
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 577
Reads contain 573 bases, 4 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 397
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 987
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 397
Contig length: 443
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 113	G: 96	T: 114	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 443
Reads contain 442 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 398
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 986
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 398
Contig length: 330
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 77	G: 74	T: 74	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 330
Reads contain 330 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 399
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 985
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 399
Contig length: 621
Avg. contig coverage: 1
Consensus contains:	A: 162	C: 140	G: 167	T: 148	N: 4
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 621
Reads contain 617 bases, 4 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 400
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 984
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 400
Contig length: 538
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 121	G: 147	T: 128	N: 5
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 538
Reads contain 533 bases, 5 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 401
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 983
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 401
Contig length: 451
Avg. contig coverage: 1
Consensus contains:	A: 108	C: 104	G: 134	T: 103	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 451
Reads contain 449 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 402
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 982
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 402
Contig length: 321
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 66	G: 53	T: 82	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 321
Reads contain 320 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 403
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 981
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 403
Contig length: 418
Avg. contig coverage: 1
Consensus contains:	A: 87	C: 87	G: 131	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 418
Reads contain 418 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 404
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 980
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 404
Contig length: 589
Avg. contig coverage: 1
Consensus contains:	A: 157	C: 127	G: 164	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 589
Reads contain 589 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 405
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 979
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 405
Contig length: 432
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 120	G: 75	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 432
Reads contain 432 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 406
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 978
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 406
Contig length: 277
Avg. contig coverage: 1
Consensus contains:	A: 67	C: 58	G: 85	T: 67	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 277
Reads contain 277 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 407
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 977
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 407
Contig length: 227
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 57	G: 25	T: 69	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 227
Reads contain 227 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 408
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 976
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 408
Contig length: 195
Avg. contig coverage: 1
Consensus contains:	A: 52	C: 52	G: 35	T: 56	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 195
Reads contain 195 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 409
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 975
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 409
Contig length: 155
Avg. contig coverage: 1
Consensus contains:	A: 62	C: 26	G: 29	T: 38	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 155
Reads contain 155 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 410
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 974
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 410
Contig length: 166
Avg. contig coverage: 1
Consensus contains:	A: 23	C: 38	G: 47	T: 58	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 166
Reads contain 166 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 411
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 973
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 411
Contig length: 217
Avg. contig coverage: 1
Consensus contains:	A: 57	C: 44	G: 54	T: 62	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 217
Reads contain 217 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 412
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 972
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 412
Contig length: 163
Avg. contig coverage: 1
Consensus contains:	A: 68	C: 27	G: 23	T: 45	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 163
Reads contain 163 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 413
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 971
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 413
Contig length: 212
Avg. contig coverage: 1
Consensus contains:	A: 83	C: 41	G: 36	T: 52	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 212
Reads contain 212 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 414
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 970
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 414
Contig length: 421
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 59	G: 99	T: 161	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 421
Reads contain 421 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 415
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 969
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 415
Contig length: 212
Avg. contig coverage: 1
Consensus contains:	A: 70	C: 51	G: 42	T: 49	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 212
Reads contain 212 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 416
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 968
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 416
Contig length: 175
Avg. contig coverage: 1
Consensus contains:	A: 30	C: 40	G: 53	T: 52	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 175
Reads contain 175 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 417
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 967
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 417
Contig length: 155
Avg. contig coverage: 1
Consensus contains:	A: 56	C: 18	G: 17	T: 64	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 155
Reads contain 155 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 418
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 966
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 418
Contig length: 188
Avg. contig coverage: 1
Consensus contains:	A: 86	C: 43	G: 27	T: 32	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 188
Reads contain 188 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 419
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 965
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 419
Contig length: 120
Avg. contig coverage: 1
Consensus contains:	A: 47	C: 22	G: 11	T: 40	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 120
Reads contain 120 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 420
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 964
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 420
Contig length: 199
Avg. contig coverage: 1
Consensus contains:	A: 81	C: 38	G: 26	T: 54	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 199
Reads contain 199 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 421
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 963
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 421
Contig length: 566
Avg. contig coverage: 1
Consensus contains:	A: 151	C: 117	G: 135	T: 162	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 566
Reads contain 565 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 422
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 962
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 422
Contig length: 400
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 76	G: 102	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 400
Reads contain 400 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 423
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 961
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 423
Contig length: 347
Avg. contig coverage: 1
Consensus contains:	A: 91	C: 67	G: 101	T: 87	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 347
Reads contain 346 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 424
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 960
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 424
Contig length: 139
Avg. contig coverage: 1
Consensus contains:	A: 29	C: 36	G: 34	T: 40	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 139
Reads contain 139 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 425
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 959
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 425
Contig length: 158
Avg. contig coverage: 1
Consensus contains:	A: 48	C: 45	G: 6	T: 58	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 158
Reads contain 157 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 426
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 958
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 426
Contig length: 129
Avg. contig coverage: 1
Consensus contains:	A: 39	C: 34	G: 19	T: 37	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 129
Reads contain 129 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 427
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 957
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 427
Contig length: 226
Avg. contig coverage: 1
Consensus contains:	A: 61	C: 48	G: 64	T: 53	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 226
Reads contain 226 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 428
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 956
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 428
Contig length: 349
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 66	G: 103	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 349
Reads contain 349 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 429
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 955
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 429
Contig length: 357
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 99	G: 51	T: 76	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 357
Reads contain 357 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 430
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 954
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 430
Contig length: 379
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 94	G: 91	T: 96	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 379
Reads contain 378 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 431
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 953
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 431
Contig length: 208
Avg. contig coverage: 1
Consensus contains:	A: 58	C: 43	G: 57	T: 50	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 208
Reads contain 208 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 432
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 952
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 432
Contig length: 146
Avg. contig coverage: 1
Consensus contains:	A: 51	C: 24	G: 32	T: 39	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 146
Reads contain 146 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 433
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 951
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 433
Contig length: 209
Avg. contig coverage: 1
Consensus contains:	A: 49	C: 47	G: 47	T: 65	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 209
Reads contain 208 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 434
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 950
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 434
Contig length: 412
Avg. contig coverage: 1
Consensus contains:	A: 147	C: 94	G: 66	T: 105	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 412
Reads contain 412 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 435
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 949
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 435
Contig length: 435
Avg. contig coverage: 1
Consensus contains:	A: 157	C: 83	G: 71	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 435
Reads contain 435 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 436
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 948
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 436
Contig length: 447
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 97	G: 110	T: 107	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 447
Reads contain 446 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 437
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 947
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 437
Contig length: 349
Avg. contig coverage: 1
Consensus contains:	A: 77	C: 118	G: 85	T: 69	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 349
Reads contain 349 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 438
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 946
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 438
Contig length: 308
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 67	G: 49	T: 70	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 308
Reads contain 308 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 439
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 945
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 439
Contig length: 138
Avg. contig coverage: 1
Consensus contains:	A: 22	C: 40	G: 45	T: 31	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 138
Reads contain 138 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 440
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 944
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 440
Contig length: 89
Avg. contig coverage: 1
Consensus contains:	A: 30	C: 24	G: 18	T: 17	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 89
Reads contain 89 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 441
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 943
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 441
Contig length: 379
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 71	G: 99	T: 79	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 379
Reads contain 379 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 442
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 942
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 442
Contig length: 455
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 76	G: 121	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 455
Reads contain 455 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 443
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 941
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 443
Contig length: 458
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 105	G: 123	T: 110	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 458
Reads contain 457 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 444
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 940
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 444
Contig length: 357
Avg. contig coverage: 1
Consensus contains:	A: 78	C: 98	G: 86	T: 95	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 357
Reads contain 357 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 445
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 939
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 445
Contig length: 318
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 76	G: 75	T: 88	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 318
Reads contain 318 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 446
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 938
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 446
Contig length: 286
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 61	G: 38	T: 80	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 286
Reads contain 286 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 447
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 937
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 447
Contig length: 173
Avg. contig coverage: 1
Consensus contains:	A: 50	C: 34	G: 34	T: 55	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 173
Reads contain 173 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 448
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 936
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 448
Contig length: 523
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 128	G: 124	T: 138	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 523
Reads contain 522 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 449
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 935
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 449
Contig length: 425
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 97	G: 121	T: 95	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 425
Reads contain 424 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 450
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 934
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 450
Contig length: 412
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 106	G: 99	T: 105	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 412
Reads contain 412 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 451
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 933
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 451
Contig length: 340
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 53	G: 68	T: 137	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 340
Reads contain 340 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 452
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 932
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 452
Contig length: 527
Avg. contig coverage: 1
Consensus contains:	A: 165	C: 105	G: 114	T: 143	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 527
Reads contain 527 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 453
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 931
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 453
Contig length: 230
Avg. contig coverage: 1
Consensus contains:	A: 67	C: 55	G: 53	T: 55	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 230
Reads contain 230 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 454
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 930
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 454
Contig length: 378
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 77	G: 91	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 378
Reads contain 378 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 455
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 929
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 455
Contig length: 198
Avg. contig coverage: 1
Consensus contains:	A: 45	C: 50	G: 59	T: 44	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 198
Reads contain 198 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 456
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 928
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 456
Contig length: 398
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 120	G: 90	T: 79	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 398
Reads contain 398 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 457
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 927
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 457
Contig length: 326
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 79	G: 72	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 326
Reads contain 326 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 458
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 926
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 458
Contig length: 248
Avg. contig coverage: 1
Consensus contains:	A: 54	C: 83	G: 53	T: 58	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 248
Reads contain 248 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 459
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 925
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 459
Contig length: 436
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 94	G: 95	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 436
Reads contain 436 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 460
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 924
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 460
Contig length: 391
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 85	G: 55	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 391
Reads contain 391 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 461
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 923
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 461
Contig length: 324
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 88	G: 78	T: 64	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 324
Reads contain 324 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 462
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 922
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 462
Contig length: 413
Avg. contig coverage: 1
Consensus contains:	A: 149	C: 94	G: 62	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 413
Reads contain 413 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 463
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 921
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 463
Contig length: 529
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 151	G: 92	T: 172	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 529
Reads contain 529 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 464
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 920
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 464
Contig length: 460
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 104	G: 94	T: 130	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 460
Reads contain 460 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 465
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 919
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 465
Contig length: 472
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 125	G: 104	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 472
Reads contain 472 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 466
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 918
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 466
Contig length: 422
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 113	G: 68	T: 98	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 422
Reads contain 422 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 467
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 917
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 467
Contig length: 572
Avg. contig coverage: 1
Consensus contains:	A: 152	C: 134	G: 115	T: 171	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 572
Reads contain 572 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 468
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 916
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 468
Contig length: 571
Avg. contig coverage: 1
Consensus contains:	A: 149	C: 126	G: 139	T: 157	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 571
Reads contain 571 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 469
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 915
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 469
Contig length: 263
Avg. contig coverage: 1
Consensus contains:	A: 64	C: 59	G: 63	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 263
Reads contain 263 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 470
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 914
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 470
Contig length: 514
Avg. contig coverage: 1
Consensus contains:	A: 164	C: 158	G: 61	T: 131	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 514
Reads contain 514 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 471
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 913
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 471
Contig length: 322
Avg. contig coverage: 1
Consensus contains:	A: 62	C: 106	G: 68	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 322
Reads contain 322 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 472
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 912
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 472
Contig length: 145
Avg. contig coverage: 1
Consensus contains:	A: 33	C: 24	G: 48	T: 40	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 145
Reads contain 145 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 473
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 911
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 473
Contig length: 532
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 126	G: 108	T: 159	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 532
Reads contain 532 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 474
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 910
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 474
Contig length: 322
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 58	G: 57	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 322
Reads contain 322 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 475
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 909
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 475
Contig length: 291
Avg. contig coverage: 1
Consensus contains:	A: 75	C: 65	G: 73	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 291
Reads contain 291 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 476
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 908
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 476
Contig length: 113
Avg. contig coverage: 1
Consensus contains:	A: 23	C: 29	G: 27	T: 34	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 113
Reads contain 113 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 477
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 907
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 477
Contig length: 501
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 115	G: 101	T: 146	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 501
Reads contain 501 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 478
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 906
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 478
Contig length: 554
Avg. contig coverage: 1
Consensus contains:	A: 151	C: 121	G: 132	T: 150	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 554
Reads contain 554 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 479
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 905
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 479
Contig length: 442
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 131	G: 108	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 442
Reads contain 442 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 480
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 904
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 480
Contig length: 386
Avg. contig coverage: 1
Consensus contains:	A: 140	C: 84	G: 75	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 386
Reads contain 386 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 481
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 903
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 481
Contig length: 525
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 116	G: 119	T: 144	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 525
Reads contain 525 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 482
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 902
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 482
Contig length: 385
Avg. contig coverage: 1
Consensus contains:	A: 95	C: 124	G: 70	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 385
Reads contain 385 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 483
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 901
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 483
Contig length: 234
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 31	G: 35	T: 66	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 234
Reads contain 234 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 484
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 900
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 484
Contig length: 389
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 74	G: 106	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 389
Reads contain 389 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 485
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 899
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 485
Contig length: 469
Avg. contig coverage: 1
Consensus contains:	A: 163	C: 108	G: 66	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 469
Reads contain 469 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 486
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 898
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 486
Contig length: 534
Avg. contig coverage: 1
Consensus contains:	A: 159	C: 111	G: 128	T: 135	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 534
Reads contain 533 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 487
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 897
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 487
Contig length: 406
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 97	G: 59	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 406
Reads contain 406 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 488
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 896
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 488
Contig length: 305
Avg. contig coverage: 1
Consensus contains:	A: 77	C: 83	G: 67	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 305
Reads contain 305 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 489
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 895
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 489
Contig length: 97
Avg. contig coverage: 1
Consensus contains:	A: 22	C: 17	G: 37	T: 21	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 97
Reads contain 97 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 490
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 894
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 490
Contig length: 496
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 97	G: 140	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 496
Reads contain 496 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 491
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 893
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 491
Contig length: 352
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 86	G: 48	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 352
Reads contain 352 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 492
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 892
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 492
Contig length: 311
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 77	G: 54	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 311
Reads contain 311 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 493
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 891
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 493
Contig length: 356
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 97	G: 106	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 356
Reads contain 356 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 494
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 890
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 494
Contig length: 543
Avg. contig coverage: 1
Consensus contains:	A: 157	C: 138	G: 114	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 543
Reads contain 543 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 495
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 889
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 495
Contig length: 463
Avg. contig coverage: 1
Consensus contains:	A: 113	C: 100	G: 118	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 463
Reads contain 463 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 496
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 888
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 496
Contig length: 419
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 115	G: 82	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 419
Reads contain 419 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 497
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 887
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 497
Contig length: 89
Avg. contig coverage: 1
Consensus contains:	A: 34	C: 17	G: 16	T: 22	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 89
Reads contain 89 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 498
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 886
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 498
Contig length: 112
Avg. contig coverage: 1
Consensus contains:	A: 20	C: 18	G: 43	T: 31	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 112
Reads contain 112 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 499
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 885
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 499
Contig length: 282
Avg. contig coverage: 1
Consensus contains:	A: 38	C: 79	G: 77	T: 88	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 282
Reads contain 282 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 500
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 884
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 500
Contig length: 221
Avg. contig coverage: 1
Consensus contains:	A: 62	C: 57	G: 62	T: 40	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 221
Reads contain 221 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 501
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 883
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 501
Contig length: 204
Avg. contig coverage: 1
Consensus contains:	A: 36	C: 64	G: 62	T: 42	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 204
Reads contain 204 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 502
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 882
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 502
Contig length: 347
Avg. contig coverage: 1
Consensus contains:	A: 91	C: 98	G: 65	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 347
Reads contain 347 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 503
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 881
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 503
Contig length: 291
Avg. contig coverage: 1
Consensus contains:	A: 87	C: 65	G: 57	T: 82	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 291
Reads contain 291 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 504
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 880
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 504
Contig length: 241
Avg. contig coverage: 1
Consensus contains:	A: 58	C: 39	G: 80	T: 64	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 241
Reads contain 241 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 505
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 879
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 505
Contig length: 276
Avg. contig coverage: 1
Consensus contains:	A: 66	C: 56	G: 76	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 276
Reads contain 276 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 506
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 878
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 506
Contig length: 486
Avg. contig coverage: 1
Consensus contains:	A: 169	C: 110	G: 79	T: 128	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 486
Reads contain 486 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 507
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 877
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 507
Contig length: 498
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 168	G: 101	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 498
Reads contain 498 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 508
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 876
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 508
Contig length: 507
Avg. contig coverage: 1
Consensus contains:	A: 145	C: 118	G: 111	T: 133	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 507
Reads contain 507 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 509
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 875
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 509
Contig length: 537
Avg. contig coverage: 1
Consensus contains:	A: 144	C: 133	G: 104	T: 156	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 537
Reads contain 537 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 510
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 874
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 510
Contig length: 457
Avg. contig coverage: 1
Consensus contains:	A: 152	C: 76	G: 129	T: 100	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 457
Reads contain 457 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 511
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 873
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 511
Contig length: 606
Avg. contig coverage: 1
Consensus contains:	A: 151	C: 129	G: 179	T: 147	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 606
Reads contain 606 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 512
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 872
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 512
Contig length: 529
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 92	G: 117	T: 174	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 529
Reads contain 529 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 513
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 871
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 513
Contig length: 214
Avg. contig coverage: 1
Consensus contains:	A: 84	C: 36	G: 19	T: 75	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 214
Reads contain 214 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 514
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 870
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 514
Contig length: 552
Avg. contig coverage: 1
Consensus contains:	A: 167	C: 102	G: 137	T: 146	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 552
Reads contain 552 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 515
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 869
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 515
Contig length: 427
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 80	G: 99	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 427
Reads contain 427 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 516
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 868
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 516
Contig length: 498
Avg. contig coverage: 1
Consensus contains:	A: 160	C: 110	G: 89	T: 139	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 498
Reads contain 498 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 517
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 867
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 517
Contig length: 473
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 85	G: 95	T: 147	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 473
Reads contain 473 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 518
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 866
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 518
Contig length: 568
Avg. contig coverage: 1
Consensus contains:	A: 177	C: 120	G: 121	T: 150	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 568
Reads contain 568 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 519
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 865
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 519
Contig length: 501
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 135	G: 97	T: 152	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 501
Reads contain 501 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 520
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 864
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 520
Contig length: 470
Avg. contig coverage: 1
Consensus contains:	A: 134	C: 92	G: 111	T: 133	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 470
Reads contain 470 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 521
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 863
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 521
Contig length: 334
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 70	G: 92	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 334
Reads contain 334 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 522
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 862
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 522
Contig length: 524
Avg. contig coverage: 1
Consensus contains:	A: 153	C: 125	G: 123	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 524
Reads contain 524 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 523
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 861
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 523
Contig length: 657
Avg. contig coverage: 1
Consensus contains:	A: 171	C: 161	G: 107	T: 218	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 657
Reads contain 657 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 524
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 860
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 524
Contig length: 495
Avg. contig coverage: 1
Consensus contains:	A: 145	C: 131	G: 117	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 495
Reads contain 495 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 525
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 859
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 525
Contig length: 587
Avg. contig coverage: 1
Consensus contains:	A: 155	C: 131	G: 156	T: 145	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 587
Reads contain 587 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 526
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 858
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 526
Contig length: 455
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 104	G: 125	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 455
Reads contain 455 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 527
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 857
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 527
Contig length: 538
Avg. contig coverage: 1
Consensus contains:	A: 170	C: 116	G: 91	T: 161	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 538
Reads contain 538 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 528
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 856
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 528
Contig length: 551
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 99	G: 114	T: 192	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 551
Reads contain 551 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 529
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 855
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 529
Contig length: 489
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 104	G: 106	T: 146	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 489
Reads contain 488 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 530
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 854
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 530
Contig length: 254
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 44	G: 35	T: 71	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 254
Reads contain 254 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 531
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 853
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 531
Contig length: 612
Avg. contig coverage: 1
Consensus contains:	A: 147	C: 129	G: 155	T: 179	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 612
Reads contain 610 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 532
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 852
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 532
Contig length: 175
Avg. contig coverage: 1
Consensus contains:	A: 47	C: 27	G: 54	T: 47	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 175
Reads contain 175 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 533
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 851
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 533
Contig length: 459
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 91	G: 108	T: 128	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 459
Reads contain 459 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 534
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 850
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 534
Contig length: 485
Avg. contig coverage: 1
Consensus contains:	A: 121	C: 133	G: 119	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 485
Reads contain 485 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 535
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 849
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 535
Contig length: 579
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 141	G: 124	T: 190	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 579
Reads contain 579 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 536
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 848
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 536
Contig length: 311
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 81	G: 43	T: 67	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 311
Reads contain 311 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 537
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 847
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 537
Contig length: 413
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 86	G: 117	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 413
Reads contain 413 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 538
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 846
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 538
Contig length: 469
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 109	G: 110	T: 139	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 469
Reads contain 469 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 539
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 845
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 539
Contig length: 471
Avg. contig coverage: 1
Consensus contains:	A: 155	C: 143	G: 69	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 471
Reads contain 471 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 540
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 844
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 540
Contig length: 537
Avg. contig coverage: 1
Consensus contains:	A: 151	C: 120	G: 118	T: 148	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 537
Reads contain 537 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 541
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 843
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 541
Contig length: 519
Avg. contig coverage: 1
Consensus contains:	A: 147	C: 115	G: 131	T: 126	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 519
Reads contain 519 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 542
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 842
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 542
Contig length: 538
Avg. contig coverage: 1
Consensus contains:	A: 197	C: 120	G: 84	T: 137	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 538
Reads contain 538 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 543
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 841
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 543
Contig length: 600
Avg. contig coverage: 1
Consensus contains:	A: 200	C: 113	G: 143	T: 141	N: 3
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 600
Reads contain 597 bases, 3 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 544
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 840
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 544
Contig length: 405
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 100	G: 107	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 405
Reads contain 405 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 545
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 839
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 545
Contig length: 305
Avg. contig coverage: 1
Consensus contains:	A: 81	C: 58	G: 83	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 305
Reads contain 305 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 546
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 838
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 546
Contig length: 498
Avg. contig coverage: 1
Consensus contains:	A: 142	C: 105	G: 121	T: 130	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 498
Reads contain 498 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 547
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 837
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 547
Contig length: 450
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 103	G: 120	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 450
Reads contain 450 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 548
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 836
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 548
Contig length: 494
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 147	G: 102	T: 126	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 494
Reads contain 494 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 549
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 835
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 549
Contig length: 525
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 109	G: 132	T: 149	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 525
Reads contain 525 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 550
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 834
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 550
Contig length: 224
Avg. contig coverage: 1
Consensus contains:	A: 91	C: 40	G: 35	T: 58	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 224
Reads contain 224 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 551
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 833
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 551
Contig length: 510
Avg. contig coverage: 1
Consensus contains:	A: 159	C: 118	G: 87	T: 146	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 510
Reads contain 510 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 552
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 832
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 552
Contig length: 581
Avg. contig coverage: 1
Consensus contains:	A: 147	C: 170	G: 113	T: 151	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 581
Reads contain 581 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 553
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 831
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 553
Contig length: 480
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 121	G: 96	T: 136	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 480
Reads contain 480 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 554
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 830
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 554
Contig length: 290
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 73	G: 32	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 290
Reads contain 290 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 555
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 829
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 555
Contig length: 413
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 167	G: 35	T: 135	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 413
Reads contain 413 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 556
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 828
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 556
Contig length: 559
Avg. contig coverage: 1
Consensus contains:	A: 160	C: 114	G: 127	T: 158	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 559
Reads contain 559 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 557
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 827
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 557
Contig length: 340
Avg. contig coverage: 1
Consensus contains:	A: 83	C: 76	G: 107	T: 74	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 340
Reads contain 340 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 558
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 826
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 558
Contig length: 418
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 74	G: 124	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 418
Reads contain 418 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 559
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 825
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 559
Contig length: 566
Avg. contig coverage: 1
Consensus contains:	A: 154	C: 140	G: 122	T: 150	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 566
Reads contain 566 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 560
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 824
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 560
Contig length: 311
Avg. contig coverage: 1
Consensus contains:	A: 100	C: 78	G: 48	T: 85	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 311
Reads contain 311 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 561
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 823
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 561
Contig length: 554
Avg. contig coverage: 1
Consensus contains:	A: 187	C: 147	G: 71	T: 149	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 554
Reads contain 554 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 562
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 822
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 562
Contig length: 567
Avg. contig coverage: 1
Consensus contains:	A: 150	C: 104	G: 140	T: 173	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 567
Reads contain 567 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 563
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 821
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 563
Contig length: 541
Avg. contig coverage: 1
Consensus contains:	A: 150	C: 116	G: 111	T: 164	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 541
Reads contain 541 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 564
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 820
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 564
Contig length: 435
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 88	G: 75	T: 129	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 435
Reads contain 435 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 565
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 819
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 565
Contig length: 538
Avg. contig coverage: 1
Consensus contains:	A: 133	C: 116	G: 141	T: 148	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 538
Reads contain 538 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 566
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 818
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 566
Contig length: 339
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 82	G: 100	T: 75	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 339
Reads contain 339 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 567
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 817
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 567
Contig length: 460
Avg. contig coverage: 1
Consensus contains:	A: 157	C: 111	G: 66	T: 126	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 460
Reads contain 460 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 568
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 816
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 568
Contig length: 493
Avg. contig coverage: 1
Consensus contains:	A: 155	C: 100	G: 88	T: 150	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 493
Reads contain 493 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 569
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 815
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 569
Contig length: 258
Avg. contig coverage: 1
Consensus contains:	A: 66	C: 81	G: 48	T: 63	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 258
Reads contain 258 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 570
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 814
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 570
Contig length: 488
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 121	G: 115	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 488
Reads contain 488 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 571
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 813
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 571
Contig length: 466
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 122	G: 107	T: 98	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 466
Reads contain 466 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 572
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 812
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 572
Contig length: 500
Avg. contig coverage: 1
Consensus contains:	A: 163	C: 100	G: 118	T: 119	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 500
Reads contain 500 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 573
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 811
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 573
Contig length: 538
Avg. contig coverage: 1
Consensus contains:	A: 142	C: 123	G: 109	T: 164	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 538
Reads contain 538 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 574
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 810
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 574
Contig length: 542
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 154	G: 149	T: 110	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 542
Reads contain 541 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 575
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 809
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 575
Contig length: 544
Avg. contig coverage: 1
Consensus contains:	A: 133	C: 108	G: 101	T: 201	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 544
Reads contain 543 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 576
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 808
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 576
Contig length: 537
Avg. contig coverage: 1
Consensus contains:	A: 123	C: 128	G: 118	T: 168	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 537
Reads contain 537 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 577
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 807
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 577
Contig length: 559
Avg. contig coverage: 1
Consensus contains:	A: 142	C: 123	G: 117	T: 177	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 559
Reads contain 559 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 578
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 806
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 578
Contig length: 359
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 62	G: 128	T: 71	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 359
Reads contain 359 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 579
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 805
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 579
Contig length: 142
Avg. contig coverage: 1
Consensus contains:	A: 54	C: 21	G: 47	T: 20	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 142
Reads contain 142 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 580
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 804
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 580
Contig length: 352
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 74	G: 67	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 352
Reads contain 352 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 581
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 803
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 581
Contig length: 464
Avg. contig coverage: 1
Consensus contains:	A: 150	C: 127	G: 61	T: 126	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 464
Reads contain 464 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 582
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 802
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 582
Contig length: 487
Avg. contig coverage: 1
Consensus contains:	A: 147	C: 128	G: 106	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 487
Reads contain 487 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 583
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 801
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 583
Contig length: 361
Avg. contig coverage: 1
Consensus contains:	A: 83	C: 69	G: 105	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 361
Reads contain 361 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 584
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 800
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 584
Contig length: 494
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 117	G: 129	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 494
Reads contain 494 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 585
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 799
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 585
Contig length: 300
Avg. contig coverage: 1
Consensus contains:	A: 70	C: 67	G: 78	T: 85	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 300
Reads contain 300 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 586
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 798
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 586
Contig length: 326
Avg. contig coverage: 1
Consensus contains:	A: 63	C: 90	G: 86	T: 86	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 326
Reads contain 325 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 587
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 797
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 587
Contig length: 485
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 124	G: 125	T: 125	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 485
Reads contain 485 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 588
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 796
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 588
Contig length: 543
Avg. contig coverage: 1
Consensus contains:	A: 84	C: 178	G: 108	T: 173	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 543
Reads contain 543 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 589
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 795
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 589
Contig length: 656
Avg. contig coverage: 1
Consensus contains:	A: 184	C: 144	G: 162	T: 164	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 656
Reads contain 654 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 590
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 794
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 590
Contig length: 376
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 85	G: 95	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 376
Reads contain 376 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 591
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 793
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 591
Contig length: 623
Avg. contig coverage: 1
Consensus contains:	A: 171	C: 120	G: 172	T: 158	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 623
Reads contain 621 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 592
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 792
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 592
Contig length: 446
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 103	G: 117	T: 110	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 446
Reads contain 446 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 593
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 791
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 593
Contig length: 560
Avg. contig coverage: 1
Consensus contains:	A: 153	C: 131	G: 112	T: 164	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 560
Reads contain 560 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 594
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 790
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 594
Contig length: 378
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 102	G: 88	T: 91	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 378
Reads contain 378 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 595
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 789
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 595
Contig length: 553
Avg. contig coverage: 1
Consensus contains:	A: 191	C: 121	G: 109	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 553
Reads contain 553 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 596
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 788
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 596
Contig length: 661
Avg. contig coverage: 1
Consensus contains:	A: 170	C: 148	G: 168	T: 175	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 661
Reads contain 661 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 597
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 787
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 597
Contig length: 441
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 97	G: 120	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 441
Reads contain 441 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 598
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 786
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 598
Contig length: 506
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 148	G: 116	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 506
Reads contain 506 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 599
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 785
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 599
Contig length: 478
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 133	G: 93	T: 135	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 478
Reads contain 478 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 600
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 784
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 600
Contig length: 587
Avg. contig coverage: 1
Consensus contains:	A: 152	C: 107	G: 147	T: 179	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 587
Reads contain 585 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 601
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 783
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 601
Contig length: 489
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 123	G: 105	T: 130	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 489
Reads contain 489 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 602
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 782
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 602
Contig length: 523
Avg. contig coverage: 1
Consensus contains:	A: 140	C: 113	G: 96	T: 174	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 523
Reads contain 523 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 603
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 781
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 603
Contig length: 433
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 104	G: 104	T: 103	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 433
Reads contain 433 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 604
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 780
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 604
Contig length: 573
Avg. contig coverage: 1
Consensus contains:	A: 159	C: 150	G: 114	T: 150	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 573
Reads contain 573 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 605
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 779
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 605
Contig length: 545
Avg. contig coverage: 1
Consensus contains:	A: 182	C: 107	G: 147	T: 108	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 545
Reads contain 544 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 606
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 778
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 606
Contig length: 615
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 148	G: 171	T: 154	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 615
Reads contain 614 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 607
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 777
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 607
Contig length: 557
Avg. contig coverage: 1
Consensus contains:	A: 162	C: 127	G: 96	T: 172	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 557
Reads contain 557 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 608
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 776
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 608
Contig length: 559
Avg. contig coverage: 1
Consensus contains:	A: 148	C: 130	G: 102	T: 179	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 559
Reads contain 559 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 609
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 775
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 609
Contig length: 553
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 133	G: 142	T: 142	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 553
Reads contain 552 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 610
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 774
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 610
Contig length: 502
Avg. contig coverage: 1
Consensus contains:	A: 176	C: 134	G: 61	T: 131	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 502
Reads contain 502 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 611
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 773
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 611
Contig length: 473
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 98	G: 128	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 473
Reads contain 473 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 612
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 772
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 612
Contig length: 404
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 95	G: 96	T: 76	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 404
Reads contain 404 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 613
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 771
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 613
Contig length: 486
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 110	G: 124	T: 114	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 486
Reads contain 486 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 614
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 770
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 614
Contig length: 443
Avg. contig coverage: 1
Consensus contains:	A: 159	C: 94	G: 104	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 443
Reads contain 443 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 615
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 769
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 615
Contig length: 480
Avg. contig coverage: 1
Consensus contains:	A: 160	C: 111	G: 72	T: 137	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 480
Reads contain 480 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 616
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 768
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 616
Contig length: 489
Avg. contig coverage: 1
Consensus contains:	A: 134	C: 111	G: 101	T: 143	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 489
Reads contain 489 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 617
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 767
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 617
Contig length: 592
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 141	G: 150	T: 145	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 592
Reads contain 592 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 618
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 766
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 618
Contig length: 336
Avg. contig coverage: 1
Consensus contains:	A: 91	C: 54	G: 76	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 336
Reads contain 336 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 619
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 765
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 619
Contig length: 446
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 78	G: 94	T: 143	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 446
Reads contain 446 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 620
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 764
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 620
Contig length: 522
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 96	G: 141	T: 186	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 522
Reads contain 522 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 621
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 763
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 621
Contig length: 590
Avg. contig coverage: 1
Consensus contains:	A: 154	C: 124	G: 146	T: 166	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 590
Reads contain 590 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 622
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 762
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 622
Contig length: 495
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 142	G: 107	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 495
Reads contain 495 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 623
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 761
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 623
Contig length: 524
Avg. contig coverage: 1
Consensus contains:	A: 154	C: 117	G: 107	T: 146	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 524
Reads contain 524 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 624
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 760
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 624
Contig length: 159
Avg. contig coverage: 1
Consensus contains:	A: 59	C: 36	G: 23	T: 41	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 159
Reads contain 159 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 625
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 759
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 625
Contig length: 411
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 104	G: 83	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 411
Reads contain 411 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 626
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 758
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 626
Contig length: 216
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 35	G: 32	T: 55	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 216
Reads contain 216 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 627
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 757
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 627
Contig length: 382
Avg. contig coverage: 1
Consensus contains:	A: 77	C: 113	G: 128	T: 64	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 382
Reads contain 382 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 628
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 756
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 628
Contig length: 401
Avg. contig coverage: 1
Consensus contains:	A: 96	C: 74	G: 87	T: 144	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 401
Reads contain 401 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 629
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 755
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 629
Contig length: 355
Avg. contig coverage: 1
Consensus contains:	A: 129	C: 73	G: 61	T: 92	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 355
Reads contain 355 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 630
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 754
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 630
Contig length: 467
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 106	G: 112	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 467
Reads contain 467 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 631
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 753
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 631
Contig length: 384
Avg. contig coverage: 1
Consensus contains:	A: 92	C: 74	G: 120	T: 98	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 384
Reads contain 384 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 632
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 752
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 632
Contig length: 386
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 54	G: 133	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 386
Reads contain 386 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 633
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 751
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 633
Contig length: 512
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 114	G: 114	T: 143	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 512
Reads contain 512 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 634
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 750
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 634
Contig length: 418
Avg. contig coverage: 1
Consensus contains:	A: 96	C: 75	G: 79	T: 168	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 418
Reads contain 418 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 635
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 749
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 635
Contig length: 422
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 103	G: 67	T: 127	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 422
Reads contain 422 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 636
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 748
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 636
Contig length: 307
Avg. contig coverage: 1
Consensus contains:	A: 60	C: 76	G: 82	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 307
Reads contain 307 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 637
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 747
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 637
Contig length: 488
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 96	G: 127	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 488
Reads contain 488 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 638
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 746
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 638
Contig length: 675
Avg. contig coverage: 1
Consensus contains:	A: 194	C: 136	G: 156	T: 187	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 675
Reads contain 673 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 639
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 745
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 639
Contig length: 442
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 111	G: 108	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 442
Reads contain 442 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 640
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 744
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 640
Contig length: 537
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 94	G: 159	T: 153	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 537
Reads contain 537 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 641
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 743
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 641
Contig length: 465
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 107	G: 84	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 465
Reads contain 465 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 642
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 742
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 642
Contig length: 409
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 104	G: 93	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 409
Reads contain 409 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 643
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 741
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 643
Contig length: 496
Avg. contig coverage: 1
Consensus contains:	A: 169	C: 96	G: 123	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 496
Reads contain 496 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 644
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 740
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 644
Contig length: 336
Avg. contig coverage: 1
Consensus contains:	A: 126	C: 78	G: 47	T: 85	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 336
Reads contain 336 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 645
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 739
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 645
Contig length: 416
Avg. contig coverage: 1
Consensus contains:	A: 121	C: 93	G: 83	T: 119	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 416
Reads contain 416 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 646
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 738
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 646
Contig length: 447
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 77	G: 130	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 447
Reads contain 447 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 647
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 737
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 647
Contig length: 158
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 23	G: 28	T: 25	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 158
Reads contain 158 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 648
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 736
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 648
Contig length: 417
Avg. contig coverage: 1
Consensus contains:	A: 142	C: 100	G: 84	T: 91	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 417
Reads contain 417 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 649
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 735
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 649
Contig length: 486
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 117	G: 102	T: 135	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 486
Reads contain 485 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 650
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 734
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 650
Contig length: 490
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 106	G: 146	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 490
Reads contain 490 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 651
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 733
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 651
Contig length: 132
Avg. contig coverage: 1
Consensus contains:	A: 73	C: 0	G: 30	T: 29	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 132
Reads contain 132 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 652
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 732
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 652
Contig length: 377
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 75	G: 75	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 377
Reads contain 377 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 653
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 731
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 653
Contig length: 472
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 101	G: 85	T: 158	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 472
Reads contain 472 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 654
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 730
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 654
Contig length: 595
Avg. contig coverage: 1
Consensus contains:	A: 177	C: 130	G: 180	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 595
Reads contain 595 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 655
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 729
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 655
Contig length: 457
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 120	G: 103	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 457
Reads contain 457 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 656
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 728
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 656
Contig length: 494
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 126	G: 103	T: 146	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 494
Reads contain 494 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 657
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 727
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 657
Contig length: 435
Avg. contig coverage: 1
Consensus contains:	A: 150	C: 107	G: 66	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 435
Reads contain 435 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 658
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 726
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 658
Contig length: 430
Avg. contig coverage: 1
Consensus contains:	A: 126	C: 99	G: 83	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 430
Reads contain 430 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 659
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 725
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 659
Contig length: 640
Avg. contig coverage: 1
Consensus contains:	A: 152	C: 176	G: 123	T: 189	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 640
Reads contain 640 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 660
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 724
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 660
Contig length: 637
Avg. contig coverage: 1
Consensus contains:	A: 164	C: 151	G: 139	T: 182	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 637
Reads contain 636 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 661
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 723
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 661
Contig length: 512
Avg. contig coverage: 1
Consensus contains:	A: 134	C: 113	G: 112	T: 153	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 512
Reads contain 512 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 662
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 722
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 662
Contig length: 396
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 89	G: 77	T: 121	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 396
Reads contain 396 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 663
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 721
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 663
Contig length: 664
Avg. contig coverage: 1
Consensus contains:	A: 188	C: 119	G: 177	T: 178	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 664
Reads contain 662 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 664
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 720
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 664
Contig length: 525
Avg. contig coverage: 1
Consensus contains:	A: 150	C: 112	G: 139	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 525
Reads contain 525 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 665
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 719
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 665
Contig length: 613
Avg. contig coverage: 1
Consensus contains:	A: 178	C: 117	G: 156	T: 161	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 613
Reads contain 612 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 666
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 718
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 666
Contig length: 518
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 147	G: 109	T: 135	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 518
Reads contain 518 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 667
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 717
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 667
Contig length: 625
Avg. contig coverage: 1
Consensus contains:	A: 162	C: 145	G: 162	T: 155	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 625
Reads contain 624 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 668
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 716
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 668
Contig length: 577
Avg. contig coverage: 1
Consensus contains:	A: 169	C: 131	G: 128	T: 149	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 577
Reads contain 577 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 669
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 715
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 669
Contig length: 554
Avg. contig coverage: 1
Consensus contains:	A: 171	C: 141	G: 109	T: 133	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 554
Reads contain 554 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 670
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 714
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 670
Contig length: 611
Avg. contig coverage: 1
Consensus contains:	A: 204	C: 139	G: 95	T: 171	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 611
Reads contain 609 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 671
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 713
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 671
Contig length: 652
Avg. contig coverage: 1
Consensus contains:	A: 160	C: 140	G: 160	T: 191	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 652
Reads contain 651 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 672
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 712
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 672
Contig length: 535
Avg. contig coverage: 1
Consensus contains:	A: 144	C: 102	G: 113	T: 176	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 535
Reads contain 535 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 673
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 711
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 673
Contig length: 570
Avg. contig coverage: 1
Consensus contains:	A: 142	C: 136	G: 151	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 570
Reads contain 570 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 674
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 710
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 674
Contig length: 498
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 117	G: 125	T: 131	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 498
Reads contain 497 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 675
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 709
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 675
Contig length: 574
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 140	G: 110	T: 183	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 574
Reads contain 574 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 676
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 708
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 676
Contig length: 541
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 117	G: 165	T: 129	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 541
Reads contain 541 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 677
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 707
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 677
Contig length: 569
Avg. contig coverage: 1
Consensus contains:	A: 176	C: 131	G: 78	T: 184	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 569
Reads contain 569 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 678
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 706
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 678
Contig length: 519
Avg. contig coverage: 1
Consensus contains:	A: 191	C: 117	G: 63	T: 148	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 519
Reads contain 519 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 679
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 705
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 679
Contig length: 603
Avg. contig coverage: 1
Consensus contains:	A: 167	C: 144	G: 122	T: 170	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 603
Reads contain 603 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 680
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 704
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 680
Contig length: 588
Avg. contig coverage: 1
Consensus contains:	A: 198	C: 119	G: 105	T: 165	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 588
Reads contain 587 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 681
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 703
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 681
Contig length: 522
Avg. contig coverage: 1
Consensus contains:	A: 155	C: 102	G: 141	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 522
Reads contain 522 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 682
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 702
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 682
Contig length: 483
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 137	G: 109	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 483
Reads contain 483 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 683
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 701
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 683
Contig length: 585
Avg. contig coverage: 1
Consensus contains:	A: 157	C: 104	G: 149	T: 174	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 585
Reads contain 584 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 684
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 700
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 684
Contig length: 596
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 146	G: 140	T: 173	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 596
Reads contain 596 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 685
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 699
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 685
Contig length: 551
Avg. contig coverage: 1
Consensus contains:	A: 194	C: 102	G: 127	T: 127	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 551
Reads contain 550 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 686
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 698
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 686
Contig length: 388
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 86	G: 83	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 388
Reads contain 388 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 687
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 697
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 687
Contig length: 387
Avg. contig coverage: 1
Consensus contains:	A: 149	C: 94	G: 58	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 387
Reads contain 387 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 688
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 696
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 688
Contig length: 451
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 115	G: 83	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 451
Reads contain 451 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 689
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 695
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 689
Contig length: 457
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 107	G: 107	T: 136	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 457
Reads contain 457 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 690
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 694
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 690
Contig length: 346
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 83	G: 42	T: 94	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 346
Reads contain 346 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 691
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 693
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 691
Contig length: 507
Avg. contig coverage: 1
Consensus contains:	A: 172	C: 111	G: 83	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 507
Reads contain 507 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 692
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 692
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 692
Contig length: 397
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 133	G: 56	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 397
Reads contain 397 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 693
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 691
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 693
Contig length: 563
Avg. contig coverage: 1
Consensus contains:	A: 166	C: 116	G: 166	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 563
Reads contain 563 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 694
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 690
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 694
Contig length: 511
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 130	G: 109	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 511
Reads contain 511 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 695
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 689
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 695
Contig length: 344
Avg. contig coverage: 1
Consensus contains:	A: 84	C: 80	G: 78	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 344
Reads contain 344 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 696
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 688
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 696
Contig length: 486
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 111	G: 108	T: 138	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 486
Reads contain 485 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 697
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 687
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 697
Contig length: 312
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 61	G: 74	T: 95	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 312
Reads contain 312 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 698
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 686
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 698
Contig length: 402
Avg. contig coverage: 1
Consensus contains:	A: 71	C: 78	G: 89	T: 164	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 402
Reads contain 402 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 699
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 685
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 699
Contig length: 320
Avg. contig coverage: 1
Consensus contains:	A: 115	C: 73	G: 55	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 320
Reads contain 320 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 700
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 684
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 700
Contig length: 298
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 64	G: 47	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 298
Reads contain 298 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 701
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 683
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 701
Contig length: 558
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 115	G: 139	T: 147	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 558
Reads contain 557 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 702
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 682
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 702
Contig length: 536
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 116	G: 142	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 536
Reads contain 536 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 703
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 681
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 703
Contig length: 522
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 141	G: 109	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 522
Reads contain 522 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 704
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 680
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 704
Contig length: 458
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 98	G: 99	T: 129	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 458
Reads contain 457 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 705
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 679
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 705
Contig length: 517
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 124	G: 109	T: 157	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 517
Reads contain 517 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 706
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 678
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 706
Contig length: 437
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 120	G: 87	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 437
Reads contain 437 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 707
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 677
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 707
Contig length: 523
Avg. contig coverage: 1
Consensus contains:	A: 180	C: 147	G: 80	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 523
Reads contain 523 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 708
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 676
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 708
Contig length: 503
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 154	G: 95	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 503
Reads contain 503 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 709
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 675
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 709
Contig length: 534
Avg. contig coverage: 1
Consensus contains:	A: 194	C: 139	G: 71	T: 130	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 534
Reads contain 534 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 710
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 674
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 710
Contig length: 491
Avg. contig coverage: 1
Consensus contains:	A: 145	C: 116	G: 91	T: 138	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 491
Reads contain 490 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 711
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 673
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 711
Contig length: 502
Avg. contig coverage: 1
Consensus contains:	A: 169	C: 80	G: 130	T: 122	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 502
Reads contain 501 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 712
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 672
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 712
Contig length: 442
Avg. contig coverage: 1
Consensus contains:	A: 113	C: 124	G: 101	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 442
Reads contain 442 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 713
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 671
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 713
Contig length: 557
Avg. contig coverage: 1
Consensus contains:	A: 145	C: 112	G: 150	T: 150	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 557
Reads contain 557 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 714
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 670
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 714
Contig length: 605
Avg. contig coverage: 1
Consensus contains:	A: 176	C: 111	G: 158	T: 160	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 605
Reads contain 605 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 715
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 669
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 715
Contig length: 473
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 136	G: 91	T: 110	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 473
Reads contain 472 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 716
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 668
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 716
Contig length: 546
Avg. contig coverage: 1
Consensus contains:	A: 189	C: 113	G: 110	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 546
Reads contain 546 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 717
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 667
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 717
Contig length: 503
Avg. contig coverage: 1
Consensus contains:	A: 123	C: 155	G: 71	T: 154	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 503
Reads contain 503 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 718
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 666
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 718
Contig length: 504
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 144	G: 115	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 504
Reads contain 504 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 719
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 665
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 719
Contig length: 435
Avg. contig coverage: 1
Consensus contains:	A: 145	C: 92	G: 86	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 435
Reads contain 435 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 720
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 664
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 720
Contig length: 496
Avg. contig coverage: 1
Consensus contains:	A: 129	C: 122	G: 113	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 496
Reads contain 496 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 721
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 663
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 721
Contig length: 406
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 105	G: 59	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 406
Reads contain 406 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 722
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 662
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 722
Contig length: 463
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 116	G: 90	T: 150	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 463
Reads contain 463 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 723
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 661
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 723
Contig length: 573
Avg. contig coverage: 1
Consensus contains:	A: 149	C: 158	G: 123	T: 143	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 573
Reads contain 573 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 724
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 660
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 724
Contig length: 438
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 75	G: 91	T: 169	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 438
Reads contain 438 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 725
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 659
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 725
Contig length: 438
Avg. contig coverage: 1
Consensus contains:	A: 121	C: 116	G: 83	T: 117	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 438
Reads contain 437 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 726
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 658
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 726
Contig length: 302
Avg. contig coverage: 1
Consensus contains:	A: 70	C: 79	G: 72	T: 81	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 302
Reads contain 302 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 727
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 657
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 727
Contig length: 405
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 82	G: 116	T: 105	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 405
Reads contain 405 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 728
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 656
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 728
Contig length: 594
Avg. contig coverage: 1
Consensus contains:	A: 168	C: 111	G: 165	T: 149	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 594
Reads contain 593 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 729
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 655
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 729
Contig length: 459
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 95	G: 94	T: 148	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 459
Reads contain 459 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 730
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 654
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 730
Contig length: 527
Avg. contig coverage: 1
Consensus contains:	A: 133	C: 107	G: 114	T: 173	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 527
Reads contain 527 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 731
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 653
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 731
Contig length: 569
Avg. contig coverage: 1
Consensus contains:	A: 164	C: 112	G: 155	T: 138	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 569
Reads contain 569 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 732
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 652
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 732
Contig length: 499
Avg. contig coverage: 1
Consensus contains:	A: 164	C: 120	G: 79	T: 134	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 499
Reads contain 497 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 733
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 651
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 733
Contig length: 497
Avg. contig coverage: 1
Consensus contains:	A: 142	C: 132	G: 94	T: 129	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 497
Reads contain 497 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 734
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 650
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 734
Contig length: 491
Avg. contig coverage: 1
Consensus contains:	A: 133	C: 127	G: 109	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 491
Reads contain 491 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 735
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 649
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 735
Contig length: 517
Avg. contig coverage: 1
Consensus contains:	A: 108	C: 139	G: 129	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 517
Reads contain 517 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 736
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 648
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 736
Contig length: 582
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 119	G: 152	T: 174	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 582
Reads contain 580 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 737
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 647
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 737
Contig length: 401
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 95	G: 57	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 401
Reads contain 401 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 738
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 646
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 738
Contig length: 349
Avg. contig coverage: 1
Consensus contains:	A: 77	C: 71	G: 91	T: 110	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 349
Reads contain 349 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 739
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 645
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 739
Contig length: 458
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 86	G: 106	T: 146	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 458
Reads contain 458 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 740
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 644
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 740
Contig length: 541
Avg. contig coverage: 1
Consensus contains:	A: 177	C: 128	G: 79	T: 157	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 541
Reads contain 541 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 741
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 643
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 741
Contig length: 377
Avg. contig coverage: 1
Consensus contains:	A: 80	C: 80	G: 92	T: 125	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 377
Reads contain 377 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 742
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 642
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 742
Contig length: 548
Avg. contig coverage: 1
Consensus contains:	A: 164	C: 136	G: 116	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 548
Reads contain 548 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 743
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 641
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 743
Contig length: 514
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 128	G: 89	T: 167	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 514
Reads contain 514 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 744
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 640
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 744
Contig length: 546
Avg. contig coverage: 1
Consensus contains:	A: 123	C: 132	G: 138	T: 153	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 546
Reads contain 546 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 745
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 639
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 745
Contig length: 516
Avg. contig coverage: 1
Consensus contains:	A: 178	C: 122	G: 80	T: 136	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 516
Reads contain 516 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 746
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 638
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 746
Contig length: 539
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 130	G: 112	T: 154	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 539
Reads contain 539 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 747
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 637
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 747
Contig length: 661
Avg. contig coverage: 1
Consensus contains:	A: 189	C: 124	G: 167	T: 181	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 661
Reads contain 661 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 748
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 636
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 748
Contig length: 563
Avg. contig coverage: 1
Consensus contains:	A: 115	C: 122	G: 148	T: 178	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 563
Reads contain 563 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 749
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 635
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 749
Contig length: 586
Avg. contig coverage: 1
Consensus contains:	A: 186	C: 135	G: 132	T: 133	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 586
Reads contain 586 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 750
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 634
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 750
Contig length: 469
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 73	G: 121	T: 161	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 469
Reads contain 469 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 751
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 633
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 751
Contig length: 386
Avg. contig coverage: 1
Consensus contains:	A: 108	C: 66	G: 70	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 386
Reads contain 386 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 752
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 632
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 752
Contig length: 525
Avg. contig coverage: 1
Consensus contains:	A: 142	C: 110	G: 139	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 525
Reads contain 525 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 753
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 631
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 753
Contig length: 552
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 117	G: 154	T: 148	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 552
Reads contain 551 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 754
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 630
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 754
Contig length: 355
Avg. contig coverage: 1
Consensus contains:	A: 80	C: 100	G: 74	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 355
Reads contain 355 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 755
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 629
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 755
Contig length: 325
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 68	G: 69	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 325
Reads contain 325 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 756
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 628
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 756
Contig length: 319
Avg. contig coverage: 1
Consensus contains:	A: 83	C: 54	G: 84	T: 98	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 319
Reads contain 319 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 757
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 627
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 757
Contig length: 113
Avg. contig coverage: 1
Consensus contains:	A: 30	C: 24	G: 23	T: 36	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 113
Reads contain 113 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 758
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 626
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 758
Contig length: 340
Avg. contig coverage: 1
Consensus contains:	A: 89	C: 66	G: 99	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 340
Reads contain 340 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 759
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 625
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 759
Contig length: 525
Avg. contig coverage: 1
Consensus contains:	A: 115	C: 170	G: 114	T: 126	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 525
Reads contain 525 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 760
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 624
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 760
Contig length: 351
Avg. contig coverage: 1
Consensus contains:	A: 88	C: 90	G: 71	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 351
Reads contain 351 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 761
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 623
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 761
Contig length: 453
Avg. contig coverage: 1
Consensus contains:	A: 93	C: 151	G: 93	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 453
Reads contain 453 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 762
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 622
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 762
Contig length: 348
Avg. contig coverage: 1
Consensus contains:	A: 92	C: 87	G: 65	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 348
Reads contain 348 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 763
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 621
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 763
Contig length: 438
Avg. contig coverage: 1
Consensus contains:	A: 108	C: 194	G: 31	T: 105	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 438
Reads contain 438 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 764
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 620
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 764
Contig length: 471
Avg. contig coverage: 1
Consensus contains:	A: 133	C: 114	G: 85	T: 139	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 471
Reads contain 471 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 765
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 619
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 765
Contig length: 507
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 130	G: 113	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 507
Reads contain 507 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 766
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 618
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 766
Contig length: 208
Avg. contig coverage: 1
Consensus contains:	A: 70	C: 28	G: 38	T: 72	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 208
Reads contain 208 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 767
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 617
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 767
Contig length: 292
Avg. contig coverage: 1
Consensus contains:	A: 75	C: 66	G: 73	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 292
Reads contain 292 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 768
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 616
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 768
Contig length: 538
Avg. contig coverage: 1
Consensus contains:	A: 162	C: 106	G: 135	T: 135	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 538
Reads contain 538 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 769
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 615
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 769
Contig length: 469
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 86	G: 117	T: 128	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 469
Reads contain 469 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 770
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 614
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 770
Contig length: 373
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 82	G: 84	T: 131	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 373
Reads contain 373 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 771
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 613
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 771
Contig length: 560
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 115	G: 129	T: 160	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 560
Reads contain 560 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 772
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 612
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 772
Contig length: 606
Avg. contig coverage: 1
Consensus contains:	A: 172	C: 118	G: 141	T: 175	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 606
Reads contain 606 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 773
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 611
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 773
Contig length: 599
Avg. contig coverage: 1
Consensus contains:	A: 162	C: 146	G: 137	T: 154	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 599
Reads contain 599 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 774
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 610
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 774
Contig length: 390
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 80	G: 107	T: 94	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 390
Reads contain 390 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 775
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 609
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 775
Contig length: 553
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 111	G: 169	T: 135	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 553
Reads contain 553 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 776
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 608
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 776
Contig length: 515
Avg. contig coverage: 1
Consensus contains:	A: 147	C: 106	G: 123	T: 139	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 515
Reads contain 515 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 777
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 607
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 777
Contig length: 552
Avg. contig coverage: 1
Consensus contains:	A: 123	C: 145	G: 141	T: 143	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 552
Reads contain 552 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 778
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 606
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 778
Contig length: 502
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 115	G: 131	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 502
Reads contain 502 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 779
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 605
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 779
Contig length: 561
Avg. contig coverage: 1
Consensus contains:	A: 169	C: 127	G: 138	T: 127	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 561
Reads contain 561 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 780
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 604
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 780
Contig length: 382
Avg. contig coverage: 1
Consensus contains:	A: 115	C: 83	G: 82	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 382
Reads contain 382 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 781
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 603
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 781
Contig length: 530
Avg. contig coverage: 1
Consensus contains:	A: 160	C: 125	G: 133	T: 111	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 530
Reads contain 529 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 782
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 602
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 782
Contig length: 408
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 137	G: 49	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 408
Reads contain 408 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 783
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 601
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 783
Contig length: 481
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 110	G: 124	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 481
Reads contain 481 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 784
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 600
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 784
Contig length: 433
Avg. contig coverage: 1
Consensus contains:	A: 150	C: 82	G: 64	T: 137	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 433
Reads contain 433 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 785
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 599
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 785
Contig length: 297
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 71	G: 52	T: 73	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 297
Reads contain 297 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 786
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 598
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 786
Contig length: 369
Avg. contig coverage: 1
Consensus contains:	A: 91	C: 87	G: 68	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 369
Reads contain 369 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 787
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 597
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 787
Contig length: 291
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 66	G: 54	T: 95	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 291
Reads contain 291 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 788
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 596
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 788
Contig length: 234
Avg. contig coverage: 1
Consensus contains:	A: 64	C: 41	G: 64	T: 65	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 234
Reads contain 234 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 789
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 595
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 789
Contig length: 519
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 115	G: 96	T: 167	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 519
Reads contain 519 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 790
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 594
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 790
Contig length: 641
Avg. contig coverage: 1
Consensus contains:	A: 181	C: 170	G: 127	T: 163	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 641
Reads contain 641 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 791
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 593
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 791
Contig length: 353
Avg. contig coverage: 1
Consensus contains:	A: 95	C: 59	G: 62	T: 136	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 353
Reads contain 352 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 792
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 592
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 792
Contig length: 545
Avg. contig coverage: 1
Consensus contains:	A: 150	C: 127	G: 124	T: 144	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 545
Reads contain 545 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 793
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 591
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 793
Contig length: 253
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 37	G: 60	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 253
Reads contain 253 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 794
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 590
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 794
Contig length: 607
Avg. contig coverage: 1
Consensus contains:	A: 171	C: 121	G: 153	T: 162	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 607
Reads contain 607 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 795
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 589
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 795
Contig length: 574
Avg. contig coverage: 1
Consensus contains:	A: 149	C: 136	G: 113	T: 176	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 574
Reads contain 574 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 796
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 588
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 796
Contig length: 170
Avg. contig coverage: 1
Consensus contains:	A: 54	C: 27	G: 5	T: 84	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 170
Reads contain 170 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 797
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 587
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 797
Contig length: 536
Avg. contig coverage: 1
Consensus contains:	A: 168	C: 108	G: 118	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 536
Reads contain 536 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 798
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 586
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 798
Contig length: 376
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 51	G: 71	T: 147	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 376
Reads contain 376 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 799
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 585
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 799
Contig length: 505
Avg. contig coverage: 1
Consensus contains:	A: 148	C: 131	G: 72	T: 154	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 505
Reads contain 505 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 800
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 584
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 800
Contig length: 452
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 91	G: 116	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 452
Reads contain 452 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 801
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 583
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 801
Contig length: 373
Avg. contig coverage: 1
Consensus contains:	A: 126	C: 91	G: 73	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 373
Reads contain 373 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 802
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 582
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 802
Contig length: 334
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 70	G: 51	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 334
Reads contain 334 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 803
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 581
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 803
Contig length: 489
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 112	G: 144	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 489
Reads contain 489 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 804
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 580
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 804
Contig length: 474
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 103	G: 129	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 474
Reads contain 474 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 805
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 579
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 805
Contig length: 550
Avg. contig coverage: 1
Consensus contains:	A: 158	C: 123	G: 122	T: 147	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 550
Reads contain 550 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 806
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 578
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 806
Contig length: 476
Avg. contig coverage: 1
Consensus contains:	A: 136	C: 110	G: 102	T: 128	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 476
Reads contain 476 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 807
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 577
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 807
Contig length: 283
Avg. contig coverage: 1
Consensus contains:	A: 74	C: 58	G: 76	T: 75	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 283
Reads contain 283 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 808
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 576
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 808
Contig length: 507
Avg. contig coverage: 1
Consensus contains:	A: 154	C: 120	G: 101	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 507
Reads contain 507 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 809
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 575
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 809
Contig length: 623
Avg. contig coverage: 1
Consensus contains:	A: 161	C: 164	G: 141	T: 157	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 623
Reads contain 623 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 810
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 574
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 810
Contig length: 603
Avg. contig coverage: 1
Consensus contains:	A: 172	C: 120	G: 123	T: 188	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 603
Reads contain 603 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 811
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 573
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 811
Contig length: 375
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 80	G: 45	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 375
Reads contain 375 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 812
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 572
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 812
Contig length: 364
Avg. contig coverage: 1
Consensus contains:	A: 88	C: 103	G: 68	T: 105	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 364
Reads contain 364 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 813
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 571
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 813
Contig length: 491
Avg. contig coverage: 1
Consensus contains:	A: 126	C: 114	G: 100	T: 151	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 491
Reads contain 491 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 814
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 570
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 814
Contig length: 375
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 110	G: 74	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 375
Reads contain 375 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 815
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 569
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 815
Contig length: 396
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 101	G: 94	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 396
Reads contain 396 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 816
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 568
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 816
Contig length: 249
Avg. contig coverage: 1
Consensus contains:	A: 65	C: 56	G: 57	T: 71	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 249
Reads contain 249 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 817
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 567
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 817
Contig length: 360
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 87	G: 87	T: 88	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 360
Reads contain 360 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 818
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 566
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 818
Contig length: 425
Avg. contig coverage: 1
Consensus contains:	A: 126	C: 99	G: 80	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 425
Reads contain 425 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 819
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 565
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 819
Contig length: 467
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 79	G: 152	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 467
Reads contain 467 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 820
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 564
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 820
Contig length: 253
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 42	G: 43	T: 66	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 253
Reads contain 253 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 821
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 563
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 821
Contig length: 205
Avg. contig coverage: 1
Consensus contains:	A: 56	C: 43	G: 62	T: 44	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 205
Reads contain 205 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 822
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 562
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 822
Contig length: 111
Avg. contig coverage: 1
Consensus contains:	A: 28	C: 16	G: 31	T: 36	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 111
Reads contain 111 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 823
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 561
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 823
Contig length: 407
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 66	G: 102	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 407
Reads contain 407 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 824
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 560
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 824
Contig length: 339
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 92	G: 73	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 339
Reads contain 339 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 825
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 559
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 825
Contig length: 327
Avg. contig coverage: 1
Consensus contains:	A: 67	C: 91	G: 82	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 327
Reads contain 327 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 826
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 558
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 826
Contig length: 238
Avg. contig coverage: 1
Consensus contains:	A: 62	C: 59	G: 52	T: 65	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 238
Reads contain 238 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 827
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 557
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 827
Contig length: 366
Avg. contig coverage: 1
Consensus contains:	A: 81	C: 80	G: 98	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 366
Reads contain 366 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 828
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 556
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 828
Contig length: 455
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 97	G: 105	T: 125	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 455
Reads contain 454 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 829
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 555
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 829
Contig length: 279
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 67	G: 45	T: 60	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 279
Reads contain 279 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 830
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 554
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 830
Contig length: 244
Avg. contig coverage: 1
Consensus contains:	A: 49	C: 79	G: 44	T: 72	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 244
Reads contain 244 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 831
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 553
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 831
Contig length: 289
Avg. contig coverage: 1
Consensus contains:	A: 67	C: 110	G: 54	T: 58	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 289
Reads contain 289 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 832
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 552
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 832
Contig length: 364
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 89	G: 59	T: 94	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 364
Reads contain 364 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 833
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 551
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 833
Contig length: 475
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 97	G: 90	T: 166	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 475
Reads contain 475 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 834
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 550
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 834
Contig length: 421
Avg. contig coverage: 1
Consensus contains:	A: 86	C: 123	G: 113	T: 99	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 421
Reads contain 421 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 835
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 549
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 835
Contig length: 333
Avg. contig coverage: 1
Consensus contains:	A: 96	C: 70	G: 72	T: 95	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 333
Reads contain 333 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 836
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 548
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 836
Contig length: 284
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 59	G: 45	T: 76	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 284
Reads contain 284 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 837
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 547
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 837
Contig length: 412
Avg. contig coverage: 1
Consensus contains:	A: 121	C: 102	G: 84	T: 105	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 412
Reads contain 412 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 838
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 546
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 838
Contig length: 314
Avg. contig coverage: 1
Consensus contains:	A: 80	C: 86	G: 59	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 314
Reads contain 314 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 839
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 545
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 839
Contig length: 230
Avg. contig coverage: 1
Consensus contains:	A: 64	C: 51	G: 49	T: 66	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 230
Reads contain 230 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 840
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 544
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 840
Contig length: 381
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 102	G: 80	T: 109	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 381
Reads contain 381 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 841
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 543
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 841
Contig length: 407
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 94	G: 84	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 407
Reads contain 407 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 842
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 542
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 842
Contig length: 225
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 39	G: 26	T: 53	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 225
Reads contain 225 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 843
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 541
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 843
Contig length: 349
Avg. contig coverage: 1
Consensus contains:	A: 84	C: 71	G: 90	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 349
Reads contain 349 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 844
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 540
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 844
Contig length: 218
Avg. contig coverage: 1
Consensus contains:	A: 69	C: 54	G: 25	T: 70	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 218
Reads contain 218 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 845
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 539
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 845
Contig length: 393
Avg. contig coverage: 1
Consensus contains:	A: 113	C: 112	G: 75	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 393
Reads contain 393 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 846
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 538
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 846
Contig length: 289
Avg. contig coverage: 1
Consensus contains:	A: 73	C: 53	G: 86	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 289
Reads contain 289 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 847
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 537
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 847
Contig length: 272
Avg. contig coverage: 1
Consensus contains:	A: 71	C: 58	G: 57	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 272
Reads contain 272 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 848
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 536
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 848
Contig length: 312
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 62	G: 63	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 312
Reads contain 312 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 849
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 535
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 849
Contig length: 316
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 73	G: 51	T: 88	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 316
Reads contain 316 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 850
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 534
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 850
Contig length: 133
Avg. contig coverage: 1
Consensus contains:	A: 29	C: 31	G: 31	T: 42	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 133
Reads contain 133 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 851
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 533
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 851
Contig length: 423
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 95	G: 86	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 423
Reads contain 423 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 852
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 532
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 852
Contig length: 208
Avg. contig coverage: 1
Consensus contains:	A: 62	C: 41	G: 50	T: 55	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 208
Reads contain 208 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 853
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 531
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 853
Contig length: 249
Avg. contig coverage: 1
Consensus contains:	A: 69	C: 65	G: 59	T: 56	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 249
Reads contain 249 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 854
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 530
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 854
Contig length: 379
Avg. contig coverage: 1
Consensus contains:	A: 113	C: 87	G: 115	T: 64	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 379
Reads contain 379 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 855
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 529
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 855
Contig length: 463
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 109	G: 118	T: 154	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 463
Reads contain 463 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 856
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 528
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 856
Contig length: 479
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 108	G: 119	T: 112	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 479
Reads contain 478 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 857
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 527
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 857
Contig length: 316
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 78	G: 58	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 316
Reads contain 316 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 858
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 526
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 858
Contig length: 533
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 173	G: 113	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 533
Reads contain 533 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 859
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 525
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 859
Contig length: 412
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 99	G: 110	T: 92	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 412
Reads contain 412 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 860
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 524
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 860
Contig length: 544
Avg. contig coverage: 1
Consensus contains:	A: 144	C: 132	G: 133	T: 135	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 544
Reads contain 544 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 861
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 523
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 861
Contig length: 531
Avg. contig coverage: 1
Consensus contains:	A: 155	C: 114	G: 114	T: 148	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 531
Reads contain 531 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 862
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 522
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 862
Contig length: 474
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 123	G: 125	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 474
Reads contain 474 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 863
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 521
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 863
Contig length: 201
Avg. contig coverage: 1
Consensus contains:	A: 60	C: 47	G: 38	T: 56	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 201
Reads contain 201 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 864
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 520
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 864
Contig length: 371
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 90	G: 82	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 371
Reads contain 371 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 865
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 519
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 865
Contig length: 445
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 88	G: 130	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 445
Reads contain 445 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 866
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 518
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 866
Contig length: 534
Avg. contig coverage: 1
Consensus contains:	A: 154	C: 137	G: 126	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 534
Reads contain 534 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 867
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 517
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 867
Contig length: 545
Avg. contig coverage: 1
Consensus contains:	A: 129	C: 149	G: 122	T: 144	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 545
Reads contain 544 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 868
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 516
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 868
Contig length: 543
Avg. contig coverage: 1
Consensus contains:	A: 164	C: 148	G: 102	T: 129	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 543
Reads contain 543 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 869
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 515
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 869
Contig length: 328
Avg. contig coverage: 1
Consensus contains:	A: 73	C: 87	G: 86	T: 82	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 328
Reads contain 328 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 870
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 514
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 870
Contig length: 459
Avg. contig coverage: 1
Consensus contains:	A: 123	C: 137	G: 78	T: 121	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 459
Reads contain 459 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 871
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 513
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 871
Contig length: 359
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 103	G: 43	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 359
Reads contain 359 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 872
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 512
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 872
Contig length: 431
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 126	G: 89	T: 109	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 431
Reads contain 431 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 873
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 511
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 873
Contig length: 198
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 34	G: 27	T: 55	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 198
Reads contain 198 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 874
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 510
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 874
Contig length: 476
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 98	G: 136	T: 125	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 476
Reads contain 476 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 875
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 509
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 875
Contig length: 319
Avg. contig coverage: 1
Consensus contains:	A: 88	C: 70	G: 83	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 319
Reads contain 319 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 876
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 508
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 876
Contig length: 512
Avg. contig coverage: 1
Consensus contains:	A: 158	C: 103	G: 107	T: 144	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 512
Reads contain 512 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 877
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 507
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 877
Contig length: 475
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 101	G: 94	T: 143	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 475
Reads contain 475 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 878
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 506
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 878
Contig length: 494
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 127	G: 146	T: 84	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 494
Reads contain 494 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 879
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 505
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 879
Contig length: 379
Avg. contig coverage: 1
Consensus contains:	A: 88	C: 122	G: 85	T: 84	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 379
Reads contain 379 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 880
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 504
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 880
Contig length: 282
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 60	G: 56	T: 76	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 282
Reads contain 282 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 881
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 503
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 881
Contig length: 288
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 64	G: 29	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 288
Reads contain 288 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 882
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 502
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 882
Contig length: 437
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 109	G: 90	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 437
Reads contain 437 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 883
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 501
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 883
Contig length: 351
Avg. contig coverage: 1
Consensus contains:	A: 81	C: 95	G: 108	T: 67	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 351
Reads contain 351 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 884
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 500
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 884
Contig length: 497
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 132	G: 91	T: 139	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 497
Reads contain 497 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 885
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 499
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 885
Contig length: 332
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 75	G: 55	T: 88	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 332
Reads contain 332 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 886
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 498
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 886
Contig length: 448
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 80	G: 137	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 448
Reads contain 448 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 887
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 497
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 887
Contig length: 496
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 103	G: 137	T: 126	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 496
Reads contain 496 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 888
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 496
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 888
Contig length: 463
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 104	G: 106	T: 135	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 463
Reads contain 463 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 889
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 495
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 889
Contig length: 432
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 63	G: 127	T: 136	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 432
Reads contain 432 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 890
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 494
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 890
Contig length: 595
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 124	G: 169	T: 156	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 595
Reads contain 595 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 891
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 493
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 891
Contig length: 340
Avg. contig coverage: 1
Consensus contains:	A: 93	C: 66	G: 94	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 340
Reads contain 340 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 892
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 492
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 892
Contig length: 273
Avg. contig coverage: 1
Consensus contains:	A: 63	C: 55	G: 79	T: 76	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 273
Reads contain 273 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 893
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 491
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 893
Contig length: 548
Avg. contig coverage: 1
Consensus contains:	A: 136	C: 81	G: 118	T: 213	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 548
Reads contain 548 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 894
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 490
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 894
Contig length: 411
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 78	G: 114	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 411
Reads contain 411 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 895
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 489
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 895
Contig length: 179
Avg. contig coverage: 1
Consensus contains:	A: 42	C: 52	G: 44	T: 41	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 179
Reads contain 179 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 896
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 488
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 896
Contig length: 339
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 81	G: 72	T: 88	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 339
Reads contain 339 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 897
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 487
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 897
Contig length: 442
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 107	G: 103	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 442
Reads contain 442 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 898
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 486
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 898
Contig length: 356
Avg. contig coverage: 1
Consensus contains:	A: 86	C: 96	G: 103	T: 71	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 356
Reads contain 356 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 899
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 485
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 899
Contig length: 400
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 81	G: 96	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 400
Reads contain 400 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 900
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 484
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 900
Contig length: 125
Avg. contig coverage: 1
Consensus contains:	A: 36	C: 29	G: 23	T: 37	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 125
Reads contain 125 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 901
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 483
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 901
Contig length: 385
Avg. contig coverage: 1
Consensus contains:	A: 108	C: 75	G: 97	T: 105	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 385
Reads contain 385 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 902
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 482
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 902
Contig length: 366
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 90	G: 57	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 366
Reads contain 366 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 903
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 481
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 903
Contig length: 411
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 85	G: 107	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 411
Reads contain 411 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 904
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 480
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 904
Contig length: 353
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 88	G: 35	T: 74	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 353
Reads contain 353 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 905
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 479
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 905
Contig length: 439
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 112	G: 97	T: 125	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 439
Reads contain 439 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 906
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 478
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 906
Contig length: 475
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 117	G: 97	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 475
Reads contain 475 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 907
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 477
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 907
Contig length: 488
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 124	G: 132	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 488
Reads contain 488 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 908
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 476
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 908
Contig length: 349
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 89	G: 64	T: 65	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 349
Reads contain 349 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 909
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 475
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 909
Contig length: 431
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 105	G: 76	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 431
Reads contain 431 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 910
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 474
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 910
Contig length: 396
Avg. contig coverage: 1
Consensus contains:	A: 93	C: 79	G: 118	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 396
Reads contain 396 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 911
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 473
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 911
Contig length: 294
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 61	G: 47	T: 84	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 294
Reads contain 294 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 912
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 472
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 912
Contig length: 414
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 110	G: 66	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 414
Reads contain 414 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 913
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 471
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 913
Contig length: 451
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 84	G: 109	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 451
Reads contain 451 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 914
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 470
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 914
Contig length: 467
Avg. contig coverage: 1
Consensus contains:	A: 121	C: 100	G: 133	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 467
Reads contain 467 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 915
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 469
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 915
Contig length: 426
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 128	G: 87	T: 95	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 426
Reads contain 426 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 916
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 468
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 916
Contig length: 419
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 111	G: 89	T: 105	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 419
Reads contain 419 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 917
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 467
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 917
Contig length: 216
Avg. contig coverage: 1
Consensus contains:	A: 47	C: 72	G: 41	T: 56	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 216
Reads contain 216 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 918
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 466
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 918
Contig length: 469
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 107	G: 125	T: 125	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 469
Reads contain 469 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 919
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 465
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 919
Contig length: 431
Avg. contig coverage: 1
Consensus contains:	A: 95	C: 107	G: 120	T: 109	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 431
Reads contain 431 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 920
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 464
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 920
Contig length: 448
Avg. contig coverage: 1
Consensus contains:	A: 144	C: 98	G: 89	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 448
Reads contain 448 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 921
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 463
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 921
Contig length: 195
Avg. contig coverage: 1
Consensus contains:	A: 88	C: 37	G: 17	T: 53	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 195
Reads contain 195 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 922
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 462
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 922
Contig length: 130
Avg. contig coverage: 1
Consensus contains:	A: 30	C: 27	G: 40	T: 33	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 130
Reads contain 130 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 923
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 461
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 923
Contig length: 413
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 95	G: 94	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 413
Reads contain 413 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 924
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 460
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 924
Contig length: 421
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 112	G: 91	T: 88	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 421
Reads contain 421 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 925
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 459
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 925
Contig length: 323
Avg. contig coverage: 1
Consensus contains:	A: 71	C: 115	G: 74	T: 63	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 323
Reads contain 323 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 926
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 458
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 926
Contig length: 206
Avg. contig coverage: 1
Consensus contains:	A: 66	C: 52	G: 45	T: 43	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 206
Reads contain 206 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 927
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 457
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 927
Contig length: 400
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 85	G: 87	T: 120	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 400
Reads contain 399 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 928
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 456
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 928
Contig length: 440
Avg. contig coverage: 1
Consensus contains:	A: 152	C: 87	G: 95	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 440
Reads contain 440 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 929
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 455
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 929
Contig length: 422
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 70	G: 96	T: 128	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 422
Reads contain 422 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 930
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 454
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 930
Contig length: 492
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 82	G: 112	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 492
Reads contain 492 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 931
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 453
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 931
Contig length: 347
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 57	G: 116	T: 80	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 347
Reads contain 347 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 932
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 452
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 932
Contig length: 446
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 100	G: 117	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 446
Reads contain 446 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 933
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 451
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 933
Contig length: 323
Avg. contig coverage: 1
Consensus contains:	A: 72	C: 94	G: 78	T: 79	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 323
Reads contain 323 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 934
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 450
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 934
Contig length: 205
Avg. contig coverage: 1
Consensus contains:	A: 46	C: 57	G: 55	T: 47	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 205
Reads contain 205 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 935
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 449
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 935
Contig length: 472
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 101	G: 101	T: 140	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 472
Reads contain 470 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 936
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 448
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 936
Contig length: 550
Avg. contig coverage: 1
Consensus contains:	A: 133	C: 126	G: 145	T: 145	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 550
Reads contain 549 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 937
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 447
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 937
Contig length: 548
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 155	G: 115	T: 140	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 548
Reads contain 547 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 938
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 446
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 938
Contig length: 390
Avg. contig coverage: 1
Consensus contains:	A: 93	C: 102	G: 92	T: 103	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 390
Reads contain 390 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 939
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 445
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 939
Contig length: 197
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 46	G: 17	T: 58	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 197
Reads contain 197 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 940
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 444
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 940
Contig length: 353
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 86	G: 74	T: 94	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 353
Reads contain 353 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 941
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 443
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 941
Contig length: 184
Avg. contig coverage: 1
Consensus contains:	A: 47	C: 46	G: 50	T: 41	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 184
Reads contain 184 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 942
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 442
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 942
Contig length: 133
Avg. contig coverage: 1
Consensus contains:	A: 45	C: 21	G: 31	T: 36	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 133
Reads contain 133 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 943
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 441
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 943
Contig length: 365
Avg. contig coverage: 1
Consensus contains:	A: 96	C: 81	G: 90	T: 96	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 365
Reads contain 363 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 944
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 440
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 944
Contig length: 398
Avg. contig coverage: 1
Consensus contains:	A: 92	C: 103	G: 83	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 398
Reads contain 398 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 945
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 439
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 945
Contig length: 467
Avg. contig coverage: 1
Consensus contains:	A: 134	C: 98	G: 115	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 467
Reads contain 467 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 946
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 438
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 946
Contig length: 376
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 98	G: 74	T: 121	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 376
Reads contain 375 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 947
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 437
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 947
Contig length: 343
Avg. contig coverage: 1
Consensus contains:	A: 115	C: 75	G: 57	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 343
Reads contain 343 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 948
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 436
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 948
Contig length: 99
Avg. contig coverage: 1
Consensus contains:	A: 40	C: 15	G: 19	T: 25	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 99
Reads contain 99 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 949
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 435
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 949
Contig length: 253
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 64	G: 46	T: 64	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 253
Reads contain 253 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 950
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 434
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 950
Contig length: 196
Avg. contig coverage: 1
Consensus contains:	A: 45	C: 54	G: 52	T: 45	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 196
Reads contain 196 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 951
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 433
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 951
Contig length: 387
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 79	G: 101	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 387
Reads contain 387 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 952
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 432
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 952
Contig length: 307
Avg. contig coverage: 1
Consensus contains:	A: 78	C: 80	G: 53	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 307
Reads contain 307 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 953
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 431
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 953
Contig length: 430
Avg. contig coverage: 1
Consensus contains:	A: 121	C: 85	G: 105	T: 117	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 430
Reads contain 428 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 954
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 430
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 954
Contig length: 403
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 95	G: 82	T: 114	N: 5
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 403
Reads contain 398 bases, 5 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 955
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 429
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 955
Contig length: 419
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 105	G: 101	T: 95	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 419
Reads contain 419 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 956
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 428
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 956
Contig length: 178
Avg. contig coverage: 1
Consensus contains:	A: 61	C: 39	G: 31	T: 47	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 178
Reads contain 178 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 957
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 427
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 957
Contig length: 113
Avg. contig coverage: 1
Consensus contains:	A: 23	C: 19	G: 40	T: 31	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 113
Reads contain 113 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 958
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 426
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 958
Contig length: 356
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 69	G: 101	T: 92	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 356
Reads contain 356 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 959
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 425
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 959
Contig length: 357
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 63	G: 75	T: 120	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 357
Reads contain 356 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 960
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 424
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 960
Contig length: 444
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 104	G: 87	T: 133	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 444
Reads contain 444 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 961
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 423
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 961
Contig length: 488
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 113	G: 107	T: 149	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 488
Reads contain 486 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 962
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 422
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 962
Contig length: 228
Avg. contig coverage: 1
Consensus contains:	A: 61	C: 49	G: 52	T: 66	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 228
Reads contain 228 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 963
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 421
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 963
Contig length: 444
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 102	G: 109	T: 121	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 444
Reads contain 444 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 964
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 420
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 964
Contig length: 393
Avg. contig coverage: 1
Consensus contains:	A: 80	C: 102	G: 104	T: 105	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 393
Reads contain 391 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 965
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 419
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 965
Contig length: 377
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 72	G: 85	T: 119	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 377
Reads contain 375 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 966
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 418
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 966
Contig length: 354
Avg. contig coverage: 1
Consensus contains:	A: 69	C: 67	G: 129	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 354
Reads contain 354 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 967
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 417
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 967
Contig length: 124
Avg. contig coverage: 1
Consensus contains:	A: 50	C: 22	G: 24	T: 28	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 124
Reads contain 124 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 968
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 416
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 968
Contig length: 322
Avg. contig coverage: 1
Consensus contains:	A: 75	C: 63	G: 94	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 322
Reads contain 322 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 969
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 415
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 969
Contig length: 188
Avg. contig coverage: 1
Consensus contains:	A: 49	C: 44	G: 54	T: 41	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 188
Reads contain 188 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 970
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 414
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 970
Contig length: 123
Avg. contig coverage: 1
Consensus contains:	A: 23	C: 43	G: 29	T: 28	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 123
Reads contain 123 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 971
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 413
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 971
Contig length: 399
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 90	G: 81	T: 109	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 399
Reads contain 398 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 972
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 412
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 972
Contig length: 488
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 122	G: 92	T: 163	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 488
Reads contain 487 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 973
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 411
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 973
Contig length: 506
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 144	G: 110	T: 133	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 506
Reads contain 505 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 974
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 410
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 974
Contig length: 216
Avg. contig coverage: 1
Consensus contains:	A: 53	C: 36	G: 81	T: 46	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 216
Reads contain 216 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 975
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 409
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 975
Contig length: 444
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 125	G: 77	T: 126	N: 4
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 444
Reads contain 440 bases, 4 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 976
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 408
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 976
Contig length: 241
Avg. contig coverage: 1
Consensus contains:	A: 57	C: 58	G: 64	T: 62	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 241
Reads contain 241 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 977
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 407
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 977
Contig length: 443
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 119	G: 88	T: 128	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 443
Reads contain 442 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 978
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 406
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 978
Contig length: 342
Avg. contig coverage: 1
Consensus contains:	A: 93	C: 82	G: 74	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 342
Reads contain 342 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 979
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 405
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 979
Contig length: 391
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 99	G: 99	T: 102	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 391
Reads contain 390 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 980
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 404
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 980
Contig length: 428
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 88	G: 89	T: 127	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 428
Reads contain 428 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 981
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 403
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 981
Contig length: 367
Avg. contig coverage: 1
Consensus contains:	A: 81	C: 89	G: 101	T: 95	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 367
Reads contain 366 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 982
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 402
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 982
Contig length: 443
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 109	G: 91	T: 138	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 443
Reads contain 441 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 983
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 401
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 983
Contig length: 278
Avg. contig coverage: 1
Consensus contains:	A: 115	C: 58	G: 27	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 278
Reads contain 278 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 984
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 400
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 984
Contig length: 224
Avg. contig coverage: 1
Consensus contains:	A: 57	C: 56	G: 42	T: 69	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 224
Reads contain 224 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 985
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 399
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 985
Contig length: 452
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 119	G: 106	T: 116	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 452
Reads contain 451 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 986
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 398
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 986
Contig length: 386
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 94	G: 96	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 386
Reads contain 386 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 987
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 397
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 987
Contig length: 304
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 58	G: 52	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 304
Reads contain 304 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 988
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 396
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 988
Contig length: 383
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 94	G: 96	T: 86	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 383
Reads contain 381 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 989
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 395
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 989
Contig length: 186
Avg. contig coverage: 1
Consensus contains:	A: 84	C: 40	G: 21	T: 41	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 186
Reads contain 186 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 990
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 394
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 990
Contig length: 475
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 77	G: 156	T: 138	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 475
Reads contain 474 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 991
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 393
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 991
Contig length: 128
Avg. contig coverage: 1
Consensus contains:	A: 29	C: 37	G: 32	T: 30	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 128
Reads contain 128 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 992
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 392
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 992
Contig length: 506
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 96	G: 124	T: 138	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 506
Reads contain 504 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 993
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 391
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 993
Contig length: 528
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 144	G: 78	T: 166	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 528
Reads contain 526 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 994
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 390
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 994
Contig length: 272
Avg. contig coverage: 1
Consensus contains:	A: 54	C: 72	G: 57	T: 88	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 272
Reads contain 271 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 995
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 389
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 995
Contig length: 322
Avg. contig coverage: 1
Consensus contains:	A: 73	C: 97	G: 56	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 322
Reads contain 322 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 996
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 388
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 996
Contig length: 224
Avg. contig coverage: 1
Consensus contains:	A: 55	C: 57	G: 51	T: 61	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 224
Reads contain 224 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 997
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 387
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 997
Contig length: 220
Avg. contig coverage: 1
Consensus contains:	A: 51	C: 56	G: 50	T: 63	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 220
Reads contain 220 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 998
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 386
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 998
Contig length: 412
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 102	G: 80	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 412
Reads contain 412 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 999
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 385
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 999
Contig length: 223
Avg. contig coverage: 1
Consensus contains:	A: 56	C: 43	G: 67	T: 57	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 223
Reads contain 223 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1000
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 384
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1000
Contig length: 408
Avg. contig coverage: 1
Consensus contains:	A: 167	C: 100	G: 49	T: 92	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 408
Reads contain 408 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1001
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 383
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1001
Contig length: 413
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 78	G: 110	T: 121	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 413
Reads contain 412 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1002
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 382
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1002
Contig length: 190
Avg. contig coverage: 1
Consensus contains:	A: 55	C: 60	G: 43	T: 32	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 190
Reads contain 190 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1003
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 381
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1003
Contig length: 213
Avg. contig coverage: 1
Consensus contains:	A: 50	C: 88	G: 26	T: 49	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 213
Reads contain 213 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1004
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 380
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1004
Contig length: 445
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 113	G: 90	T: 135	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 445
Reads contain 445 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1005
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 379
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1005
Contig length: 323
Avg. contig coverage: 1
Consensus contains:	A: 93	C: 58	G: 92	T: 79	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 323
Reads contain 322 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1006
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 378
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1006
Contig length: 413
Avg. contig coverage: 1
Consensus contains:	A: 108	C: 108	G: 111	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 413
Reads contain 413 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1007
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 377
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1007
Contig length: 287
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 74	G: 68	T: 65	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 287
Reads contain 286 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1008
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 376
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1008
Contig length: 191
Avg. contig coverage: 1
Consensus contains:	A: 52	C: 46	G: 39	T: 54	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 191
Reads contain 191 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1009
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 375
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1009
Contig length: 115
Avg. contig coverage: 1
Consensus contains:	A: 33	C: 38	G: 19	T: 25	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 115
Reads contain 115 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1010
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 374
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1010
Contig length: 345
Avg. contig coverage: 1
Consensus contains:	A: 84	C: 56	G: 85	T: 119	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 345
Reads contain 344 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1011
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 373
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1011
Contig length: 461
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 116	G: 81	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 461
Reads contain 461 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1012
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 372
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1012
Contig length: 300
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 74	G: 44	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 300
Reads contain 300 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1013
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 371
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1013
Contig length: 336
Avg. contig coverage: 1
Consensus contains:	A: 71	C: 82	G: 76	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 336
Reads contain 336 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1014
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 370
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1014
Contig length: 195
Avg. contig coverage: 1
Consensus contains:	A: 56	C: 61	G: 33	T: 45	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 195
Reads contain 195 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1015
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 369
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1015
Contig length: 398
Avg. contig coverage: 1
Consensus contains:	A: 92	C: 81	G: 117	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 398
Reads contain 398 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1016
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 368
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1016
Contig length: 203
Avg. contig coverage: 1
Consensus contains:	A: 57	C: 50	G: 43	T: 53	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 203
Reads contain 203 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1017
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 367
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1017
Contig length: 258
Avg. contig coverage: 1
Consensus contains:	A: 63	C: 65	G: 55	T: 75	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 258
Reads contain 258 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1018
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 366
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1018
Contig length: 415
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 90	G: 113	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 415
Reads contain 415 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1019
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 365
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1019
Contig length: 101
Avg. contig coverage: 1
Consensus contains:	A: 24	C: 41	G: 14	T: 22	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 101
Reads contain 101 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1020
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 364
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1020
Contig length: 206
Avg. contig coverage: 1
Consensus contains:	A: 55	C: 47	G: 39	T: 65	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 206
Reads contain 206 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1021
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 363
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1021
Contig length: 415
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 82	G: 100	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 415
Reads contain 415 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1022
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 362
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1022
Contig length: 250
Avg. contig coverage: 1
Consensus contains:	A: 62	C: 65	G: 56	T: 67	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 250
Reads contain 250 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1023
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 361
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1023
Contig length: 214
Avg. contig coverage: 1
Consensus contains:	A: 50	C: 45	G: 66	T: 53	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 214
Reads contain 214 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1024
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 360
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1024
Contig length: 152
Avg. contig coverage: 1
Consensus contains:	A: 37	C: 41	G: 39	T: 35	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 152
Reads contain 152 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1025
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 359
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1025
Contig length: 257
Avg. contig coverage: 1
Consensus contains:	A: 89	C: 53	G: 43	T: 72	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 257
Reads contain 257 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1026
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 358
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1026
Contig length: 446
Avg. contig coverage: 1
Consensus contains:	A: 126	C: 75	G: 127	T: 117	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 446
Reads contain 445 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1027
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 357
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1027
Contig length: 227
Avg. contig coverage: 1
Consensus contains:	A: 53	C: 47	G: 64	T: 63	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 227
Reads contain 227 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1028
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 356
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1028
Contig length: 427
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 96	G: 77	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 427
Reads contain 427 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1029
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 355
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1029
Contig length: 531
Avg. contig coverage: 1
Consensus contains:	A: 150	C: 142	G: 123	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 531
Reads contain 531 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1030
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 354
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1030
Contig length: 396
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 93	G: 74	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 396
Reads contain 396 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1031
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 353
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1031
Contig length: 493
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 125	G: 82	T: 130	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 493
Reads contain 493 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1032
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 352
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1032
Contig length: 403
Avg. contig coverage: 1
Consensus contains:	A: 92	C: 109	G: 86	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 403
Reads contain 403 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1033
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 351
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1033
Contig length: 518
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 128	G: 115	T: 144	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 518
Reads contain 518 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1034
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 350
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1034
Contig length: 506
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 79	G: 122	T: 162	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 506
Reads contain 506 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1035
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 349
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1035
Contig length: 454
Avg. contig coverage: 1
Consensus contains:	A: 115	C: 104	G: 100	T: 134	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 454
Reads contain 453 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1036
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 348
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1036
Contig length: 328
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 78	G: 45	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 328
Reads contain 328 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1037
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 347
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1037
Contig length: 390
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 69	G: 108	T: 107	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 390
Reads contain 389 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1038
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 346
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1038
Contig length: 323
Avg. contig coverage: 1
Consensus contains:	A: 61	C: 86	G: 82	T: 94	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 323
Reads contain 323 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1039
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 345
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1039
Contig length: 502
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 89	G: 135	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 502
Reads contain 502 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1040
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 344
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1040
Contig length: 404
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 88	G: 103	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 404
Reads contain 404 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1041
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 343
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1041
Contig length: 353
Avg. contig coverage: 1
Consensus contains:	A: 63	C: 79	G: 101	T: 110	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 353
Reads contain 353 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1042
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 342
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1042
Contig length: 444
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 87	G: 94	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 444
Reads contain 444 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1043
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 341
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1043
Contig length: 505
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 92	G: 120	T: 175	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 505
Reads contain 505 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1044
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 340
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1044
Contig length: 335
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 65	G: 80	T: 91	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 335
Reads contain 335 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1045
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 339
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1045
Contig length: 312
Avg. contig coverage: 1
Consensus contains:	A: 77	C: 77	G: 73	T: 85	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 312
Reads contain 312 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1046
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 338
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1046
Contig length: 370
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 110	G: 91	T: 74	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 370
Reads contain 369 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1047
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 337
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1047
Contig length: 511
Avg. contig coverage: 1
Consensus contains:	A: 154	C: 103	G: 99	T: 154	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 511
Reads contain 510 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1048
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 336
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1048
Contig length: 486
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 120	G: 120	T: 119	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 486
Reads contain 484 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1049
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 335
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1049
Contig length: 458
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 97	G: 127	T: 116	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 458
Reads contain 457 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1050
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 334
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1050
Contig length: 425
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 154	G: 89	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 425
Reads contain 425 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1051
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 333
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1051
Contig length: 363
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 80	G: 76	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 363
Reads contain 363 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1052
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 332
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1052
Contig length: 206
Avg. contig coverage: 1
Consensus contains:	A: 47	C: 55	G: 52	T: 52	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 206
Reads contain 206 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1053
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 331
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1053
Contig length: 469
Avg. contig coverage: 1
Consensus contains:	A: 93	C: 131	G: 119	T: 126	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 469
Reads contain 469 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1054
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 330
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1054
Contig length: 86
Avg. contig coverage: 1
Consensus contains:	A: 36	C: 17	G: 12	T: 21	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 86
Reads contain 86 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1055
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 329
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1055
Contig length: 388
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 100	G: 71	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 388
Reads contain 388 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1056
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 328
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1056
Contig length: 325
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 81	G: 92	T: 76	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 325
Reads contain 325 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1057
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 327
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1057
Contig length: 96
Avg. contig coverage: 1
Consensus contains:	A: 24	C: 16	G: 25	T: 31	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 96
Reads contain 96 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1058
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 326
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1058
Contig length: 486
Avg. contig coverage: 1
Consensus contains:	A: 126	C: 117	G: 114	T: 128	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 486
Reads contain 485 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1059
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 325
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1059
Contig length: 394
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 65	G: 93	T: 119	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 394
Reads contain 394 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1060
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 324
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1060
Contig length: 356
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 87	G: 69	T: 94	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 356
Reads contain 356 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1061
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 323
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1061
Contig length: 467
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 142	G: 99	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 467
Reads contain 467 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1062
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 322
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1062
Contig length: 409
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 83	G: 84	T: 126	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 409
Reads contain 409 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1063
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 321
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1063
Contig length: 481
Avg. contig coverage: 1
Consensus contains:	A: 171	C: 107	G: 72	T: 131	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 481
Reads contain 481 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1064
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 320
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1064
Contig length: 313
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 56	G: 81	T: 82	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 313
Reads contain 313 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1065
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 319
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1065
Contig length: 216
Avg. contig coverage: 1
Consensus contains:	A: 57	C: 40	G: 58	T: 61	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 216
Reads contain 216 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1066
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 318
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1066
Contig length: 349
Avg. contig coverage: 1
Consensus contains:	A: 121	C: 77	G: 51	T: 100	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 349
Reads contain 349 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1067
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 317
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1067
Contig length: 416
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 73	G: 84	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 416
Reads contain 416 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1068
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 316
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1068
Contig length: 447
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 98	G: 104	T: 110	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 447
Reads contain 447 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1069
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 315
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1069
Contig length: 485
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 96	G: 140	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 485
Reads contain 485 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1070
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 314
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1070
Contig length: 108
Avg. contig coverage: 1
Consensus contains:	A: 35	C: 2	G: 45	T: 26	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 108
Reads contain 108 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1071
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 313
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1071
Contig length: 489
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 136	G: 89	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 489
Reads contain 489 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1072
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 312
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1072
Contig length: 536
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 122	G: 122	T: 151	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 536
Reads contain 536 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1073
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 311
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1073
Contig length: 332
Avg. contig coverage: 1
Consensus contains:	A: 91	C: 80	G: 75	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 332
Reads contain 332 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1074
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 310
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1074
Contig length: 457
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 106	G: 104	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 457
Reads contain 457 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1075
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 309
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1075
Contig length: 420
Avg. contig coverage: 1
Consensus contains:	A: 95	C: 68	G: 143	T: 114	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 420
Reads contain 420 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1076
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 308
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1076
Contig length: 539
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 101	G: 142	T: 157	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 539
Reads contain 539 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1077
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 307
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1077
Contig length: 431
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 82	G: 109	T: 126	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 431
Reads contain 431 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1078
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 306
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1078
Contig length: 399
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 103	G: 75	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 399
Reads contain 399 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1079
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 305
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1079
Contig length: 541
Avg. contig coverage: 1
Consensus contains:	A: 190	C: 98	G: 137	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 541
Reads contain 541 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1080
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 304
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1080
Contig length: 343
Avg. contig coverage: 1
Consensus contains:	A: 65	C: 95	G: 93	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 343
Reads contain 343 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1081
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 303
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1081
Contig length: 461
Avg. contig coverage: 1
Consensus contains:	A: 133	C: 123	G: 90	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 461
Reads contain 461 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1082
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 302
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1082
Contig length: 437
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 100	G: 88	T: 129	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 437
Reads contain 437 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1083
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 301
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1083
Contig length: 424
Avg. contig coverage: 1
Consensus contains:	A: 121	C: 74	G: 93	T: 136	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 424
Reads contain 424 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1084
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 300
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1084
Contig length: 244
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 43	G: 47	T: 47	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 244
Reads contain 244 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1085
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 299
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1085
Contig length: 503
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 125	G: 121	T: 113	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 503
Reads contain 502 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1086
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 298
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1086
Contig length: 478
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 160	G: 92	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 478
Reads contain 478 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1087
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 297
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1087
Contig length: 521
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 89	G: 130	T: 146	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 521
Reads contain 521 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1088
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 296
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1088
Contig length: 419
Avg. contig coverage: 1
Consensus contains:	A: 87	C: 91	G: 122	T: 119	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 419
Reads contain 419 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1089
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 295
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1089
Contig length: 465
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 81	G: 151	T: 131	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 465
Reads contain 465 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1090
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 294
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1090
Contig length: 535
Avg. contig coverage: 1
Consensus contains:	A: 149	C: 116	G: 116	T: 154	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 535
Reads contain 535 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1091
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 293
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1091
Contig length: 158
Avg. contig coverage: 1
Consensus contains:	A: 32	C: 39	G: 40	T: 47	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 158
Reads contain 158 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1092
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 292
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1092
Contig length: 353
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 63	G: 88	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 353
Reads contain 353 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1093
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 291
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1093
Contig length: 400
Avg. contig coverage: 1
Consensus contains:	A: 89	C: 84	G: 98	T: 129	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 400
Reads contain 400 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1094
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 290
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1094
Contig length: 482
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 97	G: 101	T: 165	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 482
Reads contain 482 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1095
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 289
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1095
Contig length: 471
Avg. contig coverage: 1
Consensus contains:	A: 152	C: 93	G: 115	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 471
Reads contain 471 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1096
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 288
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1096
Contig length: 377
Avg. contig coverage: 1
Consensus contains:	A: 74	C: 88	G: 99	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 377
Reads contain 377 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1097
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 287
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1097
Contig length: 462
Avg. contig coverage: 1
Consensus contains:	A: 161	C: 110	G: 70	T: 121	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 462
Reads contain 462 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1098
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 286
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1098
Contig length: 427
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 53	G: 126	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 427
Reads contain 427 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1099
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 285
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1099
Contig length: 468
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 94	G: 114	T: 128	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 468
Reads contain 468 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1100
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 284
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1100
Contig length: 483
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 152	G: 95	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 483
Reads contain 483 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1101
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 283
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1101
Contig length: 529
Avg. contig coverage: 1
Consensus contains:	A: 165	C: 112	G: 148	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 529
Reads contain 529 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1102
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 282
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1102
Contig length: 372
Avg. contig coverage: 1
Consensus contains:	A: 95	C: 72	G: 92	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 372
Reads contain 372 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1103
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 281
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1103
Contig length: 341
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 52	G: 62	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 341
Reads contain 341 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1104
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 280
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1104
Contig length: 311
Avg. contig coverage: 1
Consensus contains:	A: 72	C: 88	G: 81	T: 70	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 311
Reads contain 311 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1105
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 279
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1105
Contig length: 391
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 55	G: 97	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 391
Reads contain 391 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1106
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 278
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1106
Contig length: 409
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 80	G: 106	T: 105	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 409
Reads contain 409 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1107
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 277
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1107
Contig length: 427
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 98	G: 111	T: 121	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 427
Reads contain 427 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1108
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 276
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1108
Contig length: 427
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 107	G: 96	T: 92	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 427
Reads contain 426 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1109
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 275
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1109
Contig length: 296
Avg. contig coverage: 1
Consensus contains:	A: 74	C: 75	G: 64	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 296
Reads contain 296 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1110
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 274
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1110
Contig length: 330
Avg. contig coverage: 1
Consensus contains:	A: 83	C: 77	G: 97	T: 73	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 330
Reads contain 330 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1111
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 273
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1111
Contig length: 379
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 61	G: 77	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 379
Reads contain 379 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1112
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 272
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1112
Contig length: 195
Avg. contig coverage: 1
Consensus contains:	A: 51	C: 32	G: 72	T: 40	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 195
Reads contain 195 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1113
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 271
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1113
Contig length: 249
Avg. contig coverage: 1
Consensus contains:	A: 70	C: 67	G: 52	T: 59	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 249
Reads contain 248 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1114
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 270
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1114
Contig length: 380
Avg. contig coverage: 1
Consensus contains:	A: 133	C: 74	G: 82	T: 91	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 380
Reads contain 380 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1115
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 269
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1115
Contig length: 333
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 37	G: 99	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 333
Reads contain 333 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1116
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 268
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1116
Contig length: 369
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 97	G: 70	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 369
Reads contain 369 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1117
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 267
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1117
Contig length: 212
Avg. contig coverage: 1
Consensus contains:	A: 54	C: 49	G: 55	T: 54	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 212
Reads contain 212 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1118
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 266
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1118
Contig length: 385
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 80	G: 77	T: 110	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 385
Reads contain 383 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1119
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 265
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1119
Contig length: 347
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 62	G: 75	T: 131	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 347
Reads contain 347 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1120
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 264
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1120
Contig length: 356
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 81	G: 53	T: 90	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 356
Reads contain 355 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1121
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 263
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1121
Contig length: 530
Avg. contig coverage: 1
Consensus contains:	A: 164	C: 108	G: 146	T: 111	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 530
Reads contain 529 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1122
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 262
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1122
Contig length: 339
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 75	G: 65	T: 61	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 339
Reads contain 339 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1123
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 261
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1123
Contig length: 181
Avg. contig coverage: 1
Consensus contains:	A: 42	C: 28	G: 49	T: 62	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 181
Reads contain 181 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1124
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 260
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1124
Contig length: 413
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 71	G: 102	T: 121	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 413
Reads contain 412 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1125
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 259
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1125
Contig length: 334
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 66	G: 80	T: 93	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 334
Reads contain 333 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1126
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 258
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1126
Contig length: 392
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 52	G: 88	T: 146	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 392
Reads contain 392 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1127
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 257
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1127
Contig length: 359
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 92	G: 60	T: 94	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 359
Reads contain 358 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1128
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 256
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1128
Contig length: 367
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 94	G: 40	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 367
Reads contain 367 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1129
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 255
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1129
Contig length: 339
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 58	G: 80	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 339
Reads contain 339 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1130
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 254
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1130
Contig length: 326
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 64	G: 89	T: 69	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 326
Reads contain 326 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1131
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 253
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1131
Contig length: 323
Avg. contig coverage: 1
Consensus contains:	A: 96	C: 91	G: 59	T: 76	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 323
Reads contain 322 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1132
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 252
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1132
Contig length: 353
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 61	G: 80	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 353
Reads contain 353 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1133
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 251
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1133
Contig length: 339
Avg. contig coverage: 1
Consensus contains:	A: 96	C: 77	G: 83	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 339
Reads contain 339 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1134
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 250
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1134
Contig length: 277
Avg. contig coverage: 1
Consensus contains:	A: 65	C: 64	G: 68	T: 80	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 277
Reads contain 277 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1135
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 249
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1135
Contig length: 316
Avg. contig coverage: 1
Consensus contains:	A: 46	C: 69	G: 109	T: 92	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 316
Reads contain 316 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1136
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 248
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1136
Contig length: 317
Avg. contig coverage: 1
Consensus contains:	A: 69	C: 81	G: 81	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 317
Reads contain 317 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1137
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 247
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1137
Contig length: 490
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 87	G: 120	T: 144	N: 4
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 490
Reads contain 486 bases, 4 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1138
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 246
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1138
Contig length: 310
Avg. contig coverage: 1
Consensus contains:	A: 92	C: 57	G: 69	T: 92	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 310
Reads contain 310 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1139
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 245
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1139
Contig length: 420
Avg. contig coverage: 1
Consensus contains:	A: 108	C: 105	G: 98	T: 109	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 420
Reads contain 420 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1140
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 244
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1140
Contig length: 346
Avg. contig coverage: 1
Consensus contains:	A: 100	C: 97	G: 75	T: 74	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 346
Reads contain 346 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1141
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 243
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1141
Contig length: 425
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 71	G: 130	T: 117	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 425
Reads contain 424 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1142
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 242
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1142
Contig length: 421
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 74	G: 110	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 421
Reads contain 421 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1143
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 241
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1143
Contig length: 180
Avg. contig coverage: 1
Consensus contains:	A: 42	C: 36	G: 70	T: 32	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 180
Reads contain 180 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1144
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 240
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1144
Contig length: 379
Avg. contig coverage: 1
Consensus contains:	A: 108	C: 78	G: 100	T: 92	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 379
Reads contain 378 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1145
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 239
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1145
Contig length: 339
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 86	G: 78	T: 81	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 339
Reads contain 339 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1146
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 238
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1146
Contig length: 412
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 71	G: 110	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 412
Reads contain 412 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1147
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 237
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1147
Contig length: 458
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 82	G: 85	T: 156	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 458
Reads contain 458 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1148
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 236
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1148
Contig length: 485
Avg. contig coverage: 1
Consensus contains:	A: 147	C: 128	G: 100	T: 109	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 485
Reads contain 484 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1149
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 235
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1149
Contig length: 409
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 73	G: 118	T: 114	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 409
Reads contain 408 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1150
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 234
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1150
Contig length: 334
Avg. contig coverage: 1
Consensus contains:	A: 85	C: 86	G: 83	T: 80	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 334
Reads contain 334 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1151
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 233
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1151
Contig length: 345
Avg. contig coverage: 1
Consensus contains:	A: 53	C: 70	G: 111	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 345
Reads contain 345 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1152
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 232
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1152
Contig length: 299
Avg. contig coverage: 1
Consensus contains:	A: 73	C: 65	G: 68	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 299
Reads contain 299 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1153
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 231
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1153
Contig length: 409
Avg. contig coverage: 1
Consensus contains:	A: 81	C: 93	G: 129	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 409
Reads contain 409 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1154
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 230
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1154
Contig length: 321
Avg. contig coverage: 1
Consensus contains:	A: 70	C: 103	G: 76	T: 72	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 321
Reads contain 321 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1155
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 229
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1155
Contig length: 498
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 89	G: 147	T: 131	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 498
Reads contain 498 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1156
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 228
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1156
Contig length: 157
Avg. contig coverage: 1
Consensus contains:	A: 31	C: 55	G: 39	T: 32	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 157
Reads contain 157 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1157
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 227
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1157
Contig length: 401
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 92	G: 121	T: 72	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 401
Reads contain 401 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1158
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 226
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1158
Contig length: 258
Avg. contig coverage: 1
Consensus contains:	A: 67	C: 53	G: 82	T: 56	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 258
Reads contain 258 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1159
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 225
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1159
Contig length: 117
Avg. contig coverage: 1
Consensus contains:	A: 42	C: 21	G: 12	T: 42	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 117
Reads contain 117 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1160
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 224
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1160
Contig length: 289
Avg. contig coverage: 1
Consensus contains:	A: 75	C: 48	G: 93	T: 73	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 289
Reads contain 289 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1161
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 223
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1161
Contig length: 374
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 74	G: 90	T: 108	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 374
Reads contain 373 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1162
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 222
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1162
Contig length: 309
Avg. contig coverage: 1
Consensus contains:	A: 74	C: 67	G: 82	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 309
Reads contain 309 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1163
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 221
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1163
Contig length: 422
Avg. contig coverage: 1
Consensus contains:	A: 108	C: 105	G: 102	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 422
Reads contain 422 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1164
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 220
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1164
Contig length: 210
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 39	G: 42	T: 50	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 210
Reads contain 210 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1165
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 219
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1165
Contig length: 345
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 82	G: 75	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 345
Reads contain 345 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1166
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 218
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1166
Contig length: 409
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 82	G: 88	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 409
Reads contain 409 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1167
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 217
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1167
Contig length: 179
Avg. contig coverage: 1
Consensus contains:	A: 47	C: 30	G: 40	T: 62	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 179
Reads contain 179 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1168
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 216
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1168
Contig length: 420
Avg. contig coverage: 1
Consensus contains:	A: 121	C: 109	G: 108	T: 82	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 420
Reads contain 420 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1169
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 215
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1169
Contig length: 270
Avg. contig coverage: 1
Consensus contains:	A: 71	C: 75	G: 72	T: 52	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 270
Reads contain 270 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1170
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 214
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1170
Contig length: 225
Avg. contig coverage: 1
Consensus contains:	A: 58	C: 47	G: 65	T: 55	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 225
Reads contain 225 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1171
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 213
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1171
Contig length: 379
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 88	G: 69	T: 81	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 379
Reads contain 379 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1172
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 212
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1172
Contig length: 369
Avg. contig coverage: 1
Consensus contains:	A: 129	C: 79	G: 65	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 369
Reads contain 369 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1173
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 211
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1173
Contig length: 292
Avg. contig coverage: 1
Consensus contains:	A: 75	C: 79	G: 76	T: 62	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 292
Reads contain 292 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1174
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 210
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1174
Contig length: 466
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 138	G: 110	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 466
Reads contain 466 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1175
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 209
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1175
Contig length: 515
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 160	G: 99	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 515
Reads contain 515 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1176
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 208
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1176
Contig length: 264
Avg. contig coverage: 1
Consensus contains:	A: 86	C: 33	G: 51	T: 94	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 264
Reads contain 264 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1177
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 207
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1177
Contig length: 320
Avg. contig coverage: 1
Consensus contains:	A: 69	C: 95	G: 68	T: 88	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 320
Reads contain 320 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1178
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 206
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1178
Contig length: 323
Avg. contig coverage: 1
Consensus contains:	A: 85	C: 58	G: 93	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 323
Reads contain 323 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1179
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 205
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1179
Contig length: 455
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 122	G: 88	T: 127	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 455
Reads contain 455 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1180
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 204
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1180
Contig length: 396
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 88	G: 95	T: 111	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 396
Reads contain 395 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1181
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 203
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1181
Contig length: 342
Avg. contig coverage: 1
Consensus contains:	A: 84	C: 83	G: 66	T: 109	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 342
Reads contain 342 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1182
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 202
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1182
Contig length: 379
Avg. contig coverage: 1
Consensus contains:	A: 160	C: 66	G: 64	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 379
Reads contain 379 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1183
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 201
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1183
Contig length: 479
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 112	G: 111	T: 140	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 479
Reads contain 479 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1184
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 200
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1184
Contig length: 299
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 75	G: 66	T: 82	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 299
Reads contain 299 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1185
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 199
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1185
Contig length: 326
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 70	G: 93	T: 69	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 326
Reads contain 326 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1186
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 198
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1186
Contig length: 488
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 122	G: 98	T: 125	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 488
Reads contain 488 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1187
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 197
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1187
Contig length: 211
Avg. contig coverage: 1
Consensus contains:	A: 43	C: 54	G: 69	T: 45	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 211
Reads contain 211 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1188
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 196
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1188
Contig length: 238
Avg. contig coverage: 1
Consensus contains:	A: 54	C: 53	G: 58	T: 73	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 238
Reads contain 238 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1189
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 195
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1189
Contig length: 376
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 93	G: 84	T: 95	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 376
Reads contain 376 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1190
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 194
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1190
Contig length: 303
Avg. contig coverage: 1
Consensus contains:	A: 75	C: 71	G: 69	T: 82	N: 6
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 303
Reads contain 297 bases, 6 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1191
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 193
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1191
Contig length: 338
Avg. contig coverage: 1
Consensus contains:	A: 85	C: 95	G: 68	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 338
Reads contain 338 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1192
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 192
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1192
Contig length: 374
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 90	G: 98	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 374
Reads contain 374 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1193
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 191
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1193
Contig length: 370
Avg. contig coverage: 1
Consensus contains:	A: 61	C: 153	G: 63	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 370
Reads contain 370 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1194
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 190
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1194
Contig length: 346
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 81	G: 68	T: 98	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 346
Reads contain 346 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1195
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 189
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1195
Contig length: 408
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 99	G: 78	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 408
Reads contain 408 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1196
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 188
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1196
Contig length: 524
Avg. contig coverage: 1
Consensus contains:	A: 134	C: 126	G: 107	T: 155	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 524
Reads contain 522 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1197
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 187
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1197
Contig length: 400
Avg. contig coverage: 1
Consensus contains:	A: 89	C: 105	G: 109	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 400
Reads contain 400 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1198
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 186
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1198
Contig length: 366
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 74	G: 77	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 366
Reads contain 366 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1199
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 185
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1199
Contig length: 365
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 85	G: 69	T: 114	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 365
Reads contain 365 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1200
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 184
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1200
Contig length: 404
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 60	G: 104	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 404
Reads contain 404 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1201
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 183
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1201
Contig length: 147
Avg. contig coverage: 1
Consensus contains:	A: 31	C: 30	G: 49	T: 37	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 147
Reads contain 147 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1202
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 182
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1202
Contig length: 387
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 56	G: 88	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 387
Reads contain 387 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1203
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 181
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1203
Contig length: 335
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 50	G: 74	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 335
Reads contain 335 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1204
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 180
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1204
Contig length: 334
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 81	G: 67	T: 92	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 334
Reads contain 334 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1205
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 179
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1205
Contig length: 372
Avg. contig coverage: 1
Consensus contains:	A: 87	C: 93	G: 102	T: 89	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 372
Reads contain 371 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1206
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 178
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1206
Contig length: 370
Avg. contig coverage: 1
Consensus contains:	A: 92	C: 54	G: 124	T: 100	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 370
Reads contain 370 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1207
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 177
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1207
Contig length: 334
Avg. contig coverage: 1
Consensus contains:	A: 88	C: 87	G: 81	T: 75	N: 3
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 334
Reads contain 331 bases, 3 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1208
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 176
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1208
Contig length: 324
Avg. contig coverage: 1
Consensus contains:	A: 83	C: 88	G: 55	T: 98	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 324
Reads contain 324 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1209
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 175
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1209
Contig length: 481
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 87	G: 95	T: 143	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 481
Reads contain 481 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1210
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 174
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1210
Contig length: 330
Avg. contig coverage: 1
Consensus contains:	A: 80	C: 87	G: 84	T: 79	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 330
Reads contain 330 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1211
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 173
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1211
Contig length: 355
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 95	G: 77	T: 85	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 355
Reads contain 354 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1212
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 172
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1212
Contig length: 190
Avg. contig coverage: 1
Consensus contains:	A: 74	C: 29	G: 27	T: 60	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 190
Reads contain 190 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1213
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 171
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1213
Contig length: 410
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 109	G: 84	T: 110	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 410
Reads contain 409 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1214
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 170
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1214
Contig length: 390
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 90	G: 100	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 390
Reads contain 390 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1215
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 169
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1215
Contig length: 463
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 106	G: 113	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 463
Reads contain 463 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1216
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 168
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1216
Contig length: 418
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 98	G: 81	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 418
Reads contain 418 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1217
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 167
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1217
Contig length: 177
Avg. contig coverage: 1
Consensus contains:	A: 53	C: 29	G: 51	T: 44	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 177
Reads contain 177 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1218
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 166
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1218
Contig length: 407
Avg. contig coverage: 1
Consensus contains:	A: 162	C: 82	G: 56	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 407
Reads contain 407 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1219
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 165
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1219
Contig length: 272
Avg. contig coverage: 1
Consensus contains:	A: 81	C: 65	G: 57	T: 69	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 272
Reads contain 272 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1220
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 164
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1220
Contig length: 527
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 148	G: 117	T: 142	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 527
Reads contain 526 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1221
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 163
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1221
Contig length: 532
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 140	G: 123	T: 159	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 532
Reads contain 532 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1222
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 162
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1222
Contig length: 416
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 84	G: 108	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 416
Reads contain 416 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1223
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 161
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1223
Contig length: 122
Avg. contig coverage: 1
Consensus contains:	A: 19	C: 15	G: 58	T: 30	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 122
Reads contain 122 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1224
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 160
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1224
Contig length: 293
Avg. contig coverage: 1
Consensus contains:	A: 74	C: 51	G: 71	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 293
Reads contain 293 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1225
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 159
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1225
Contig length: 474
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 122	G: 94	T: 121	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 474
Reads contain 474 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1226
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 158
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1226
Contig length: 404
Avg. contig coverage: 1
Consensus contains:	A: 74	C: 98	G: 90	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 404
Reads contain 404 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1227
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 157
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1227
Contig length: 394
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 94	G: 98	T: 105	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 394
Reads contain 394 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1228
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 156
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1228
Contig length: 419
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 106	G: 72	T: 125	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 419
Reads contain 419 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1229
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 155
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1229
Contig length: 453
Avg. contig coverage: 1
Consensus contains:	A: 134	C: 90	G: 107	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 453
Reads contain 453 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1230
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 154
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1230
Contig length: 440
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 109	G: 123	T: 103	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 440
Reads contain 440 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1231
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 153
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1231
Contig length: 491
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 103	G: 130	T: 147	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 491
Reads contain 491 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1232
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 152
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1232
Contig length: 500
Avg. contig coverage: 1
Consensus contains:	A: 148	C: 131	G: 87	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 500
Reads contain 500 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1233
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 151
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1233
Contig length: 418
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 118	G: 88	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 418
Reads contain 418 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1234
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 150
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1234
Contig length: 261
Avg. contig coverage: 1
Consensus contains:	A: 63	C: 65	G: 74	T: 59	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 261
Reads contain 261 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1235
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 149
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1235
Contig length: 335
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 92	G: 57	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 335
Reads contain 335 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1236
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 148
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1236
Contig length: 315
Avg. contig coverage: 1
Consensus contains:	A: 73	C: 81	G: 72	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 315
Reads contain 315 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1237
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 147
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1237
Contig length: 417
Avg. contig coverage: 1
Consensus contains:	A: 123	C: 92	G: 106	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 417
Reads contain 417 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1238
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 146
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1238
Contig length: 336
Avg. contig coverage: 1
Consensus contains:	A: 83	C: 121	G: 41	T: 91	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 336
Reads contain 336 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1239
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 145
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1239
Contig length: 293
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 46	G: 53	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 293
Reads contain 293 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1240
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 144
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1240
Contig length: 176
Avg. contig coverage: 1
Consensus contains:	A: 55	C: 25	G: 33	T: 63	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 176
Reads contain 176 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1241
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 143
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1241
Contig length: 402
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 73	G: 85	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 402
Reads contain 402 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1242
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 142
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1242
Contig length: 142
Avg. contig coverage: 1
Consensus contains:	A: 28	C: 43	G: 30	T: 41	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 142
Reads contain 142 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1243
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 141
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1243
Contig length: 376
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 86	G: 84	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 376
Reads contain 376 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1244
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 140
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1244
Contig length: 389
Avg. contig coverage: 1
Consensus contains:	A: 91	C: 163	G: 57	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 389
Reads contain 389 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1245
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 139
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1245
Contig length: 350
Avg. contig coverage: 1
Consensus contains:	A: 96	C: 75	G: 82	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 350
Reads contain 350 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1246
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 138
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1246
Contig length: 381
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 86	G: 81	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 381
Reads contain 381 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1247
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 137
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1247
Contig length: 468
Avg. contig coverage: 1
Consensus contains:	A: 145	C: 123	G: 75	T: 125	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 468
Reads contain 468 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1248
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 136
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1248
Contig length: 359
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 82	G: 66	T: 95	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 359
Reads contain 359 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1249
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 135
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1249
Contig length: 232
Avg. contig coverage: 1
Consensus contains:	A: 70	C: 45	G: 59	T: 58	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 232
Reads contain 232 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1250
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 134
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1250
Contig length: 526
Avg. contig coverage: 1
Consensus contains:	A: 149	C: 98	G: 141	T: 138	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 526
Reads contain 526 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1251
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 133
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1251
Contig length: 176
Avg. contig coverage: 1
Consensus contains:	A: 64	C: 27	G: 37	T: 48	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 176
Reads contain 176 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1252
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 132
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1252
Contig length: 471
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 141	G: 76	T: 129	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 471
Reads contain 471 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1253
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 131
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1253
Contig length: 329
Avg. contig coverage: 1
Consensus contains:	A: 67	C: 100	G: 87	T: 75	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 329
Reads contain 329 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1254
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 130
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1254
Contig length: 355
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 49	G: 117	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 355
Reads contain 355 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1255
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 129
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1255
Contig length: 374
Avg. contig coverage: 1
Consensus contains:	A: 88	C: 88	G: 121	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 374
Reads contain 374 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1256
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 128
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1256
Contig length: 262
Avg. contig coverage: 1
Consensus contains:	A: 70	C: 36	G: 60	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 262
Reads contain 262 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1257
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 127
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1257
Contig length: 426
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 106	G: 82	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 426
Reads contain 426 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1258
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 126
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1258
Contig length: 416
Avg. contig coverage: 1
Consensus contains:	A: 88	C: 143	G: 69	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 416
Reads contain 416 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1259
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 125
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1259
Contig length: 356
Avg. contig coverage: 1
Consensus contains:	A: 88	C: 83	G: 99	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 356
Reads contain 356 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1260
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 124
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1260
Contig length: 393
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 109	G: 80	T: 85	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 393
Reads contain 393 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1261
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 123
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1261
Contig length: 440
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 97	G: 105	T: 109	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 440
Reads contain 439 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1262
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 122
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1262
Contig length: 370
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 65	G: 58	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 370
Reads contain 370 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1263
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 121
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1263
Contig length: 428
Avg. contig coverage: 1
Consensus contains:	A: 165	C: 75	G: 68	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 428
Reads contain 428 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1264
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 120
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1264
Contig length: 357
Avg. contig coverage: 1
Consensus contains:	A: 71	C: 86	G: 91	T: 108	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 357
Reads contain 356 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1265
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 119
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1265
Contig length: 475
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 121	G: 100	T: 140	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 475
Reads contain 475 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1266
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 118
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1266
Contig length: 443
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 117	G: 122	T: 110	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 443
Reads contain 443 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1267
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 117
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1267
Contig length: 417
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 82	G: 111	T: 114	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 417
Reads contain 417 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1268
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 116
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1268
Contig length: 138
Avg. contig coverage: 1
Consensus contains:	A: 40	C: 27	G: 31	T: 40	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 138
Reads contain 138 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1269
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 115
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1269
Contig length: 392
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 117	G: 87	T: 82	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 392
Reads contain 392 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1270
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 114
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1270
Contig length: 398
Avg. contig coverage: 1
Consensus contains:	A: 100	C: 77	G: 74	T: 147	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 398
Reads contain 398 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1271
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 113
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1271
Contig length: 349
Avg. contig coverage: 1
Consensus contains:	A: 67	C: 63	G: 111	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 349
Reads contain 349 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1272
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 112
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1272
Contig length: 547
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 151	G: 112	T: 165	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 547
Reads contain 547 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1273
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 111
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1273
Contig length: 242
Avg. contig coverage: 1
Consensus contains:	A: 56	C: 36	G: 81	T: 69	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 242
Reads contain 242 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1274
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 110
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1274
Contig length: 116
Avg. contig coverage: 1
Consensus contains:	A: 37	C: 27	G: 31	T: 21	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 116
Reads contain 116 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1275
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 109
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1275
Contig length: 384
Avg. contig coverage: 1
Consensus contains:	A: 48	C: 144	G: 79	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 384
Reads contain 384 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1276
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 108
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1276
Contig length: 444
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 101	G: 123	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 444
Reads contain 444 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1277
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 107
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1277
Contig length: 149
Avg. contig coverage: 1
Consensus contains:	A: 46	C: 22	G: 40	T: 41	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 149
Reads contain 149 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1278
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 106
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1278
Contig length: 319
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 65	G: 86	T: 69	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 319
Reads contain 319 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1279
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 105
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1279
Contig length: 319
Avg. contig coverage: 1
Consensus contains:	A: 69	C: 79	G: 86	T: 85	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 319
Reads contain 319 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1280
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 104
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1280
Contig length: 122
Avg. contig coverage: 1
Consensus contains:	A: 60	C: 29	G: 9	T: 24	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 122
Reads contain 122 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1281
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 103
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1281
Contig length: 224
Avg. contig coverage: 1
Consensus contains:	A: 51	C: 62	G: 48	T: 63	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 224
Reads contain 224 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1282
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 102
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1282
Contig length: 219
Avg. contig coverage: 1
Consensus contains:	A: 58	C: 56	G: 64	T: 41	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 219
Reads contain 219 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1283
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 101
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1283
Contig length: 252
Avg. contig coverage: 1
Consensus contains:	A: 72	C: 68	G: 54	T: 58	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 252
Reads contain 252 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1284
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 100
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1284
Contig length: 211
Avg. contig coverage: 1
Consensus contains:	A: 46	C: 56	G: 57	T: 52	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 211
Reads contain 211 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1285
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 99
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1285
Contig length: 103
Avg. contig coverage: 1
Consensus contains:	A: 32	C: 22	G: 31	T: 18	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 103
Reads contain 103 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1286
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 98
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1286
Contig length: 113
Avg. contig coverage: 1
Consensus contains:	A: 27	C: 26	G: 31	T: 29	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 113
Reads contain 113 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1287
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 97
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1287
Contig length: 451
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 91	G: 115	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 451
Reads contain 451 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1288
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 96
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1288
Contig length: 459
Avg. contig coverage: 1
Consensus contains:	A: 162	C: 48	G: 149	T: 100	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 459
Reads contain 459 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1289
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 95
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1289
Contig length: 271
Avg. contig coverage: 1
Consensus contains:	A: 68	C: 60	G: 51	T: 92	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 271
Reads contain 271 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1290
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 94
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1290
Contig length: 288
Avg. contig coverage: 1
Consensus contains:	A: 56	C: 65	G: 80	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 288
Reads contain 288 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1291
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 93
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1291
Contig length: 208
Avg. contig coverage: 1
Consensus contains:	A: 47	C: 61	G: 63	T: 37	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 208
Reads contain 208 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1292
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 92
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1292
Contig length: 478
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 128	G: 120	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 478
Reads contain 478 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1293
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 91
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1293
Contig length: 243
Avg. contig coverage: 1
Consensus contains:	A: 67	C: 59	G: 52	T: 65	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 243
Reads contain 243 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1294
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 90
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1294
Contig length: 529
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 138	G: 107	T: 172	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 529
Reads contain 529 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1295
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 89
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1295
Contig length: 271
Avg. contig coverage: 1
Consensus contains:	A: 73	C: 49	G: 80	T: 69	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 271
Reads contain 271 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1296
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 88
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1296
Contig length: 174
Avg. contig coverage: 1
Consensus contains:	A: 43	C: 38	G: 56	T: 37	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 174
Reads contain 174 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1297
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 87
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1297
Contig length: 87
Avg. contig coverage: 1
Consensus contains:	A: 19	C: 24	G: 18	T: 26	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 87
Reads contain 87 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1298
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 86
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1298
Contig length: 323
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 77	G: 49	T: 72	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 323
Reads contain 323 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1299
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 85
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1299
Contig length: 351
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 68	G: 94	T: 88	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 351
Reads contain 351 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1300
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 84
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1300
Contig length: 417
Avg. contig coverage: 1
Consensus contains:	A: 144	C: 93	G: 80	T: 100	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 417
Reads contain 417 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1301
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 83
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1301
Contig length: 128
Avg. contig coverage: 1
Consensus contains:	A: 40	C: 25	G: 39	T: 24	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 128
Reads contain 128 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1302
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 82
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1302
Contig length: 223
Avg. contig coverage: 1
Consensus contains:	A: 72	C: 46	G: 61	T: 44	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 223
Reads contain 223 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1303
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 81
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1303
Contig length: 357
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 64	G: 98	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 357
Reads contain 357 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1304
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 80
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1304
Contig length: 240
Avg. contig coverage: 1
Consensus contains:	A: 52	C: 54	G: 61	T: 73	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 240
Reads contain 240 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1305
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 79
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1305
Contig length: 435
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 109	G: 82	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 435
Reads contain 435 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1306
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 78
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1306
Contig length: 296
Avg. contig coverage: 1
Consensus contains:	A: 68	C: 46	G: 68	T: 114	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 296
Reads contain 296 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1307
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 77
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1307
Contig length: 263
Avg. contig coverage: 1
Consensus contains:	A: 72	C: 50	G: 60	T: 81	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 263
Reads contain 263 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1308
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 76
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1308
Contig length: 338
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 72	G: 88	T: 101	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 338
Reads contain 337 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1309
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 75
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1309
Contig length: 216
Avg. contig coverage: 1
Consensus contains:	A: 50	C: 32	G: 44	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 216
Reads contain 216 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1310
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 74
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1310
Contig length: 135
Avg. contig coverage: 1
Consensus contains:	A: 34	C: 33	G: 38	T: 30	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 135
Reads contain 135 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1311
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 73
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1311
Contig length: 155
Avg. contig coverage: 1
Consensus contains:	A: 33	C: 39	G: 28	T: 55	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 155
Reads contain 155 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1312
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 72
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1312
Contig length: 220
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 50	G: 25	T: 55	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 220
Reads contain 220 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1313
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 71
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1313
Contig length: 345
Avg. contig coverage: 1
Consensus contains:	A: 129	C: 75	G: 47	T: 94	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 345
Reads contain 345 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1314
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 70
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1314
Contig length: 235
Avg. contig coverage: 1
Consensus contains:	A: 63	C: 47	G: 58	T: 67	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 235
Reads contain 235 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1315
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 69
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1315
Contig length: 318
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 61	G: 71	T: 69	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 318
Reads contain 318 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1316
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 68
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1316
Contig length: 466
Avg. contig coverage: 1
Consensus contains:	A: 151	C: 119	G: 81	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 466
Reads contain 466 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1317
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 67
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1317
Contig length: 440
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 110	G: 96	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 440
Reads contain 440 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1318
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 66
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1318
Contig length: 306
Avg. contig coverage: 1
Consensus contains:	A: 66	C: 45	G: 102	T: 92	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 306
Reads contain 305 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1319
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 65
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1319
Contig length: 540
Avg. contig coverage: 1
Consensus contains:	A: 149	C: 129	G: 123	T: 139	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 540
Reads contain 540 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1320
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 64
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1320
Contig length: 185
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 27	G: 32	T: 50	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 185
Reads contain 185 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1321
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 63
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1321
Contig length: 329
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 67	G: 72	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 329
Reads contain 329 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1322
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 62
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1322
Contig length: 173
Avg. contig coverage: 1
Consensus contains:	A: 65	C: 35	G: 44	T: 29	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 173
Reads contain 173 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1323
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 61
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1323
Contig length: 463
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 78	G: 134	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 463
Reads contain 463 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1324
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 60
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1324
Contig length: 372
Avg. contig coverage: 1
Consensus contains:	A: 129	C: 79	G: 56	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 372
Reads contain 372 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1325
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 59
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1325
Contig length: 431
Avg. contig coverage: 1
Consensus contains:	A: 85	C: 102	G: 111	T: 133	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 431
Reads contain 431 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1326
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 58
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1326
Contig length: 423
Avg. contig coverage: 1
Consensus contains:	A: 136	C: 77	G: 76	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 423
Reads contain 423 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1327
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 57
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1327
Contig length: 543
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 136	G: 104	T: 172	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 543
Reads contain 542 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1328
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 56
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1328
Contig length: 418
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 141	G: 94	T: 73	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 418
Reads contain 418 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1329
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 55
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1329
Contig length: 441
Avg. contig coverage: 1
Consensus contains:	A: 95	C: 111	G: 113	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 441
Reads contain 441 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1330
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 54
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1330
Contig length: 456
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 81	G: 107	T: 161	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 456
Reads contain 456 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1331
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 53
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1331
Contig length: 355
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 69	G: 96	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 355
Reads contain 355 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1332
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 52
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1332
Contig length: 404
Avg. contig coverage: 1
Consensus contains:	A: 92	C: 60	G: 135	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 404
Reads contain 404 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1333
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 51
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1333
Contig length: 339
Avg. contig coverage: 1
Consensus contains:	A: 87	C: 80	G: 78	T: 94	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 339
Reads contain 339 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1334
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 50
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1334
Contig length: 563
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 91	G: 175	T: 158	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 563
Reads contain 563 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1335
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 49
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1335
Contig length: 330
Avg. contig coverage: 1
Consensus contains:	A: 84	C: 94	G: 70	T: 82	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 330
Reads contain 330 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1336
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 48
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1336
Contig length: 205
Avg. contig coverage: 1
Consensus contains:	A: 71	C: 50	G: 49	T: 35	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 205
Reads contain 205 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1337
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 47
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1337
Contig length: 374
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 107	G: 45	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 374
Reads contain 374 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1338
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 46
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1338
Contig length: 360
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 63	G: 93	T: 84	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 360
Reads contain 360 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1339
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 45
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1339
Contig length: 312
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 71	G: 54	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 312
Reads contain 312 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1340
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 44
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1340
Contig length: 316
Avg. contig coverage: 1
Consensus contains:	A: 87	C: 85	G: 62	T: 82	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 316
Reads contain 316 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1341
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 43
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1341
Contig length: 332
Avg. contig coverage: 1
Consensus contains:	A: 87	C: 78	G: 78	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 332
Reads contain 332 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1342
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 42
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1342
Contig length: 327
Avg. contig coverage: 1
Consensus contains:	A: 78	C: 92	G: 78	T: 79	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 327
Reads contain 327 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1343
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 41
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1343
Contig length: 367
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 65	G: 114	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 367
Reads contain 367 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1344
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 40
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1344
Contig length: 299
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 69	G: 81	T: 73	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 299
Reads contain 299 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1345
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 39
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1345
Contig length: 440
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 109	G: 96	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 440
Reads contain 440 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1346
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 38
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1346
Contig length: 375
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 111	G: 76	T: 98	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 375
Reads contain 375 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1347
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 37
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1347
Contig length: 354
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 60	G: 70	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 354
Reads contain 354 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1348
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 36
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1348
Contig length: 255
Avg. contig coverage: 1
Consensus contains:	A: 59	C: 41	G: 49	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 255
Reads contain 255 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1349
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 35
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1349
Contig length: 456
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 121	G: 82	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 456
Reads contain 456 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1350
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 34
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1350
Contig length: 386
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 74	G: 92	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 386
Reads contain 386 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1351
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 33
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1351
Contig length: 473
Avg. contig coverage: 1
Consensus contains:	A: 157	C: 124	G: 76	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 473
Reads contain 473 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1352
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 32
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1352
Contig length: 394
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 54	G: 88	T: 114	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 394
Reads contain 394 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1353
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 31
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1353
Contig length: 468
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 141	G: 88	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 468
Reads contain 468 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1354
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 30
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1354
Contig length: 518
Avg. contig coverage: 1
Consensus contains:	A: 158	C: 101	G: 112	T: 147	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 518
Reads contain 518 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1355
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 29
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1355
Contig length: 423
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 75	G: 107	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 423
Reads contain 423 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1356
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 28
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1356
Contig length: 453
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 93	G: 126	T: 95	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 453
Reads contain 453 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1357
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 27
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1357
Contig length: 602
Avg. contig coverage: 1
Consensus contains:	A: 162	C: 153	G: 164	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 602
Reads contain 602 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1358
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 26
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1358
Contig length: 360
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 72	G: 99	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 360
Reads contain 360 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1359
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 25
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1359
Contig length: 319
Avg. contig coverage: 1
Consensus contains:	A: 100	C: 62	G: 73	T: 84	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 319
Reads contain 319 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1360
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 24
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1360
Contig length: 551
Avg. contig coverage: 1
Consensus contains:	A: 133	C: 107	G: 175	T: 136	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 551
Reads contain 551 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1361
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 23
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1361
Contig length: 491
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 137	G: 117	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 491
Reads contain 491 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1362
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 22
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1362
Contig length: 405
Avg. contig coverage: 1
Consensus contains:	A: 123	C: 58	G: 84	T: 139	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 405
Reads contain 404 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1363
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 21
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1363
Contig length: 321
Avg. contig coverage: 1
Consensus contains:	A: 66	C: 77	G: 84	T: 94	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 321
Reads contain 321 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1364
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 20
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1364
Contig length: 454
Avg. contig coverage: 1
Consensus contains:	A: 126	C: 129	G: 81	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 454
Reads contain 454 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1365
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 19
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1365
Contig length: 316
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 88	G: 43	T: 82	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 316
Reads contain 316 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1366
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 18
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1366
Contig length: 356
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 71	G: 73	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 356
Reads contain 356 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1367
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 17
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1367
Contig length: 521
Avg. contig coverage: 1
Consensus contains:	A: 183	C: 98	G: 144	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 521
Reads contain 521 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1368
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 16
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1368
Contig length: 262
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 41	G: 54	T: 85	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 262
Reads contain 262 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1369
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 15
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1369
Contig length: 195
Avg. contig coverage: 1
Consensus contains:	A: 46	C: 43	G: 59	T: 47	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 195
Reads contain 195 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1370
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 14
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1370
Contig length: 429
Avg. contig coverage: 1
Consensus contains:	A: 165	C: 113	G: 54	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 429
Reads contain 429 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1371
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 13
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1371
Contig length: 376
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 106	G: 69	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 376
Reads contain 376 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1372
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 12
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1372
Contig length: 534
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 137	G: 156	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 534
Reads contain 534 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1373
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 11
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1373
Contig length: 574
Avg. contig coverage: 1
Consensus contains:	A: 192	C: 135	G: 118	T: 129	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 574
Reads contain 574 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1374
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 10
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1374
Contig length: 517
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 119	G: 122	T: 130	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 517
Reads contain 517 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1375
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 9
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1375
Contig length: 322
Avg. contig coverage: 1
Consensus contains:	A: 93	C: 71	G: 69	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 322
Reads contain 322 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1376
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 8
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1376
Contig length: 372
Avg. contig coverage: 1
Consensus contains:	A: 89	C: 88	G: 97	T: 98	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 372
Reads contain 372 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1377
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 7
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1377
Contig length: 557
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 136	G: 119	T: 159	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 557
Reads contain 557 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1378
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 6
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1378
Contig length: 413
Avg. contig coverage: 1
Consensus contains:	A: 93	C: 111	G: 90	T: 119	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 413
Reads contain 413 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1379
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 5
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1379
Contig length: 580
Avg. contig coverage: 1
Consensus contains:	A: 151	C: 125	G: 162	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 580
Reads contain 580 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1380
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 4
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1380
Contig length: 405
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 88	G: 93	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 405
Reads contain 405 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1381
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 3
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1381
Contig length: 477
Avg. contig coverage: 1
Consensus contains:	A: 126	C: 144	G: 87	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 477
Reads contain 477 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1382
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 2
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1382
Contig length: 323
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 72	G: 89	T: 72	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 323
Reads contain 323 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1383
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1383
Contig length: 372
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 56	G: 122	T: 85	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 372
Reads contain 372 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Saving project statistics to file: step1_log/step1_info_contigstats_pass.1.txt
Saving read tag list to file: step1_log/step1_info_readtaglist.1.txt
Saving contig tag list to file: step1_log/step1_info_consensustaglist.1.txt
Saving project contig<->read list to file: step1_log/step1_info_contigreadlist_pass.1.txt
Localtime: Thu Jul 15 12:00:00 2010
Saving project statistics to file: step1_info/step1_info_contigstats.txt
Localtime: Thu Jul 15 12:00:00 2010
Saving read tag list to file: step1_info/step1_info_readtaglist.txt
Localtime: Thu Jul 15 12:00:00 2010
Saving contig tag list to file: step1_info/step1_info_consensustaglist.txt
Localtime: Thu Jul 15 12:00:00 2010
Saving project contig<->read list to file: step1_info/step1_info_contigreadlist.txt
Localtime: Thu Jul 15 12:00:00 2010
Saving contigs to file: step1_results/step1_out.caf
Localtime: Thu Jul 15 12:00:00 2010
Saving contigs to directory: step1_results/step1_out.gap4da
(first deleting old directory)
(now creating new directory)
(saving contigs)
Done.
Localtime: Thu Jul 15 12:00:00 2010
Saving contigs to FASTA file: step1_results/step1_out.unpadded.fasta
Saving padded contigs to FASTA file: step1_results/step1_out.padded.fasta
Saving contig qualities to FASTA quality file: step1_results/step1_out.unpadded.fasta.qual
Saving padded contig qualities to FASTA quality file: step1_results/step1_out.padded.fasta.qual
Localtime: Thu Jul 15 12:00:00 2010
Saving SNP analysis to file: step1_info/step1_info_snpanalysis.txt
Writing CAF for reads for strain default
Finished step 1
Loading parameters from file: me_step2.par

Starting step 2: assembling each strain for itself
Used parameter settings:
  General (-GE):
	Project name (pro)                      : step1
	Load job (lj)                           : CAF file (caf)
	Filecheck only (fo)                     : No
	External quality (eq)                   : from SCF (scf)
	    Ext. qual. override (eqo)           : No
	    Discard reads on e.q. error (droeqe): No
	Read naming scheme (rns)                : Sanger Institute (sanger)
	Merge with XML trace info (mxti)        : No
	Use template information (uti)          : No

	EST-assembly start step (ess)           : 1

  Assembly options (-AS):
	Minimum read length (mrl)               : 80
	Number of passes (nop)                  : 1
	    Skim each pass (sep)                : Yes
	Maximum number of RMB break loops (rbl) : 30
	Spoiler detection (sd)                  : No
	    Last pass only (sdlpo)              : Yes
	Base default quality (bdq)              : Yes

	Use genomic pathfinder (ugpf)           : Yes

	Use emergency search stop (uess)        : Yes
	    ESS partner depth (esspd)           : 500
	Use emergency blacklist (uebl)          : Yes
	Use max. contig build time (umcbt)      : No
	    Build time in seconds (bts)         : 10000

  Strain and backbone options (-SB):
	Load straindata (lsd)                   : Yes
	Load backbone (lb)                      : No
	    Start backbone usage in pass (sbuip): 1
	    Backbone strain name (bsn)          : (none)
	    Backbone file type (bft)            : FASTA file (fasta)
	    Backbone rail length (brl)          : 2500
	    Backbone base quality (bbq)         : 0
	    Also build new contigs (abnc)       : Yes

  Dataprocessing options (-DP):
	Use read extensions (ure)               : No
	    Read extension window length (rewl) : 30
	    Read extension w. maxerrors (rewme) : 2
	    First extension in pass (feip)      : 0
	    Last extension in pass (leip)       : 0
	Tag poly A/T at ends (tpae)             : No
	    Polybase window length (pbwl)       : 7
	    Polybase window maxerrors (pbwme)   : 2
	    Polyb. window grace distance (pbwgc): 9

  Clipping options (-CL):
	Possible vector leftover clip (pvc) : Yes
	    maximum len allowed (pvcmla)    : 12
	Quality clip (qc)                   : Yes
	    Minimum quality (qcmq)          : 20
	    Window length (qcwl)            : 30
	Masked bases clip (mbc)             : Yes
	    Gap size (mbcgs)                : 15
	    Max front gap (mbcmfg)          : 30
	    Max end gap (mbcmeg)            : 60
	Ensure minimum left clip (emlc)     : Yes
	    Minimum left clip req. (mlcr)   : 25
	    Set minimum left clip to (smlc) : 30

  Parameters for SKIM algorithm (-SK):
	Bases per hash (bph)             : 16
	Hash save stepping (hss)         : 4
	Percent required (pr)            : 25
	Maximum hashes in memory (mhim)  : 15000000
	Max hits per read (mhpr)         : 200

  Align parameters for Smith-Waterman align (-AL):
	Bandwidth in percent (bip)         : 15
	Bandwidth max (bmax)               : 100
	Bandwidth min (bmin)               : 25
	Minimum score (ms)                 : 30
	Minimum overlap (mo)               : 30
	Minimum relative score in % (mrs)  : 75
	Extra gap penalty (egp)            : Yes
	    extra gap penalty level (egpl) : low
	    Max. egp in percent (megpp)    : 100

  Contig parameters (-CO):
	Name prefix (np)                                         : step1
	Error analysis (an)                                      : SCF signal (signal)
	Reject on drop in relative alignment score (%)           : 15
	Max. error rate in dangerous zones in % (dmer)           : 1
	Mark repeats (mr)                                        : Yes
	    Assume SNP instead of repeats (asir)                 : No
	    Minimum reads per group needed for tagging (mrpg)    : 2
	    Minimum neighbour quality needed for tagging (mnq)   : 20
	    Minimum Group Quality needed for RMB Tagging (mgqrt) : 30
	    End-read Marking Exclusion Area in bases (emea)      : 15
	    Also mark gap bases (amgb)                           : Yes
	        Also mark gap bases - even multicolumn (amgbemc) : Yes
	        Also mark gap bases - need both strands (amgbnbs): Yes
	Default template insert size minimum (dismin)            : 500
	Default template insert size maximum (dismax)            : 5000

  Edit options (-ED):
	Automatic contig editing (ace)        : No
	Strict editing mode (sem)             : No
	Confirmation threshold in percent (ct): 50

  Directories (-DI):
	When loading EXP   files: 
	When loading SCF   files: 
	For writing log files   : step1_log
	For writing gap4 DA res.: step1_out

  Input files (-FI):
	When loading EXP fofn                    : step1_in.fofn
	When loading project from PHD            : step1_in.phd.1
	When loading project from CAF            : step1_in.caf
	When loading sequences from FASTA        : step1_in.fasta
	When loading qualities from FASTA quality: step1_in.fasta.qual
	When loading straindata                  : step1_straindata_in.txt
	When loading XML trace info files        : step1_traceinfo_in.xml

	When loading backbone from CAF           : step1_backbone_in.caf
	When loading backbone from GenBank       : step1_backbone_in.gbf
	When loading backbone from FASTA         : step1_backbone_in.fasta

  Output files (-OUTPUT/-OUT):
    Result files:
	Saved as CAF                       (orc): Yes
	Saved as FASTA                     (orf): Yes
	Saved as GAP4 (directed assembly)  (org): Yes
	Saved as phrap ACE                 (ora): No
	Saved as HTML                      (orh): No
	Saved as Transposed Contig Summary (ors): No
	Saved as simple text format        (ort): No

    Temporary result files:
	Saved as CAF                      (otc): No
	Saved as FASTA                    (otf): No
	Saved as GAP4 (directed assembly) (otg): No
	Saved as phrap ACE                (ota): No
	Saved as HTML                     (oth): No
	Saved as Transposed Contig Summary(ots): No
	Saved as simple text format       (ott): No

    Extended temporary result files:
	Saved as CAF                      (oetc): No
	Saved as FASTA                    (oetf): No
	Saved as GAP4 (directed assembly) (oetg): No
	Saved as phrap ACE                (oeta): No
	Saved as HTML                     (oeth): No
	Save also singlets               (oetas): No

    Alignment output customisation:
	TEXT characters per line          (tcpl): 60
	HTML characters per line          (hcpl): 60
	TEXT characters per line         (tegfc): ' '
	HTML characters per line         (hegfc): ' '

    File / directory names:
	CAF             : step1_out.caf
	FASTA           : step1_out.unpadded.fasta
	FASTA quality   : step1_out.unpadded.fasta.qual
	FASTA (padded)  : step1_out.padded.fasta
	FASTA qual.(pad): step1_out.padded.fasta.qual
	GAP4 (directory): step1_out.gap4da
	ACE             : step1_out.ace
	HTML            : step1_out.html
	Simple text     : step1_out.txt
	TCS overview    : step1_out.tcs

Assembly of strain step1_snpsinSTRAIN_default.caf(default)
Creating directory default_log ... done.
Creating directory default_results ... done.
Creating directory default_info ... done.
Localtime: Thu Jul 15 12:00:00 2010

Loading project from CAF file: step1_snpsinSTRAIN_default.caf
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
Localtime: Thu Jul 15 12:00:00 2010

Loading straindata.
Building hash table ... done.

Read 0 straindata lines.
Warning: gnlti136477498 has no strain. Using default strain.
Warning: gnlti136477499 has no strain. Using default strain.
Warning: gnlti136477501 has no strain. Using default strain.
Warning: gnlti136477505 has no strain. Using default strain.
Warning: gnlti136477506 has no strain. Using default strain.
Warning: gnlti136477508 has no strain. Using default strain.
Warning: gnlti136477509 has no strain. Using default strain.
Warning: gnlti136477510 has no strain. Using default strain.
Warning: gnlti136477515 has no strain. Using default strain.
Warning: gnlti136477523 has no strain. Using default strain.
Warning: gnlti136477525 has no strain. Using default strain.
Warning: gnlti136477528 has no strain. Using default strain.
Warning: gnlti136477529 has no strain. Using default strain.
Warning: gnlti136477533 has no strain. Using default strain.
Warning: gnlti136477535 has no strain. Using default strain.
Warning: gnlti136477539 has no strain. Using default strain.
Warning: gnlti136477545 has no strain. Using default strain.
Warning: gnlti136477549 has no strain. Using default strain.
Warning: gnlti136477555 has no strain. Using default strain.
Warning: gnlti136477557 has no strain. Using default strain.
Warning: gnlti136477559 has no strain. Using default strain.
Warning: gnlti136477560 has no strain. Using default strain.
Warning: gnlti136477561 has no strain. Using default strain.
Warning: gnlti136477562 has no strain. Using default strain.
Warning: gnlti136477568 has no strain. Using default strain.
Warning: gnlti136477570 has no strain. Using default strain.
Warning: gnlti136477573 has no strain. Using default strain.
Warning: gnlti136477575 has no strain. Using default strain.
Warning: gnlti136477579 has no strain. Using default strain.
Warning: gnlti136477580 has no strain. Using default strain.
Warning: gnlti136477588 has no strain. Using default strain.
Warning: gnlti136477591 has no strain. Using default strain.
Warning: gnlti136477592 has no strain. Using default strain.
Warning: gnlti136477593 has no strain. Using default strain.
Warning: gnlti136477605 has no strain. Using default strain.
Warning: gnlti136477609 has no strain. Using default strain.
Warning: gnlti136477615 has no strain. Using default strain.
Warning: gnlti136477616 has no strain. Using default strain.
Warning: gnlti136477617 has no strain. Using default strain.
Warning: gnlti136477618 has no strain. Using default strain.
Warning: gnlti136477619 has no strain. Using default strain.
Warning: gnlti136477628 has no strain. Using default strain.
Warning: gnlti136477629 has no strain. Using default strain.
Warning: gnlti136477631 has no strain. Using default strain.
Warning: gnlti136477637 has no strain. Using default strain.
Warning: gnlti136477642 has no strain. Using default strain.
Warning: gnlti136477657 has no strain. Using default strain.
Warning: gnlti136477662 has no strain. Using default strain.
Warning: gnlti136477666 has no strain. Using default strain.
Warning: gnlti136477670 has no strain. Using default strain.
Warning: gnlti136477671 has no strain. Using default strain.
Warning: gnlti136477672 has no strain. Using default strain.
Warning: gnlti136477673 has no strain. Using default strain.
Warning: gnlti136477675 has no strain. Using default strain.
Warning: gnlti136477676 has no strain. Using default strain.
Warning: gnlti136477677 has no strain. Using default strain.
Warning: gnlti136477679 has no strain. Using default strain.
Warning: gnlti136477682 has no strain. Using default strain.
Warning: gnlti136477684 has no strain. Using default strain.
Warning: gnlti136477688 has no strain. Using default strain.
Warning: gnlti136477693 has no strain. Using default strain.
Warning: gnlti136477699 has no strain. Using default strain.
Warning: gnlti136477702 has no strain. Using default strain.
Warning: gnlti136477703 has no strain. Using default strain.
Warning: gnlti136477718 has no strain. Using default strain.
Warning: gnlti136477722 has no strain. Using default strain.
Warning: gnlti136477726 has no strain. Using default strain.
Warning: gnlti136477728 has no strain. Using default strain.
Warning: gnlti136477732 has no strain. Using default strain.
Warning: gnlti136477734 has no strain. Using default strain.
Warning: gnlti136477739 has no strain. Using default strain.
Warning: gnlti136477746 has no strain. Using default strain.
Warning: gnlti136477752 has no strain. Using default strain.
Warning: gnlti136477753 has no strain. Using default strain.
Warning: gnlti136477755 has no strain. Using default strain.
Warning: gnlti136477760 has no strain. Using default strain.
Warning: gnlti136477772 has no strain. Using default strain.
Warning: gnlti136477778 has no strain. Using default strain.
Warning: gnlti136477782 has no strain. Using default strain.
Warning: gnlti136477783 has no strain. Using default strain.
Warning: gnlti136477784 has no strain. Using default strain.
Warning: gnlti136477785 has no strain. Using default strain.
Warning: gnlti136477786 has no strain. Using default strain.
Warning: gnlti136477787 has no strain. Using default strain.
Warning: gnlti136477791 has no strain. Using default strain.
Warning: gnlti136477793 has no strain. Using default strain.
Warning: gnlti136477795 has no strain. Using default strain.
Warning: gnlti136477796 has no strain. Using default strain.
Warning: gnlti136477810 has no strain. Using default strain.
Warning: gnlti136477813 has no strain. Using default strain.
Warning: gnlti136477817 has no strain. Using default strain.
Warning: gnlti136477822 has no strain. Using default strain.
Warning: gnlti136477838 has no strain. Using default strain.
Warning: gnlti136477851 has no strain. Using default strain.
Warning: gnlti136477862 has no strain. Using default strain.
Warning: gnlti136477876 has no strain. Using default strain.
Warning: gnlti136477880 has no strain. Using default strain.
Warning: gnlti136477884 has no strain. Using default strain.
Warning: gnlti136477885 has no strain. Using default strain.
Warning: gnlti136477888 has no strain. Using default strain.
Warning: gnlti136477889 has no strain. Using default strain.
Warning: gnlti136477890 has no strain. Using default strain.
Warning: gnlti136477891 has no strain. Using default strain.
Warning: gnlti136477892 has no strain. Using default strain.
Warning: gnlti136477894 has no strain. Using default strain.
Warning: gnlti136477897 has no strain. Using default strain.
Warning: gnlti136477900 has no strain. Using default strain.
Warning: gnlti136477901 has no strain. Using default strain.
Warning: gnlti136477902 has no strain. Using default strain.
Warning: gnlti136477904 has no strain. Using default strain.
Warning: gnlti136477907 has no strain. Using default strain.
Warning: gnlti136477916 has no strain. Using default strain.
Warning: gnlti136477918 has no strain. Using default strain.
Warning: gnlti136477926 has no strain. Using default strain.
Warning: gnlti136477930 has no strain. Using default strain.
Warning: gnlti136477933 has no strain. Using default strain.
Warning: gnlti136477935 has no strain. Using default strain.
Warning: gnlti136477937 has no strain. Using default strain.
Warning: gnlti136477938 has no strain. Using default strain.
Warning: gnlti136477939 has no strain. Using default strain.
Warning: gnlti136477940 has no strain. Using default strain.
Warning: gnlti136477943 has no strain. Using default strain.
Warning: gnlti136477947 has no strain. Using default strain.
Warning: gnlti136477955 has no strain. Using default strain.
Warning: gnlti136477961 has no strain. Using default strain.
Warning: gnlti136477962 has no strain. Using default strain.
Warning: gnlti136477967 has no strain. Using default strain.
Warning: gnlti136477968 has no strain. Using default strain.
Warning: gnlti136477971 has no strain. Using default strain.
Warning: gnlti136477972 has no strain. Using default strain.
Warning: gnlti136477977 has no strain. Using default strain.
Warning: gnlti136477978 has no strain. Using default strain.
Warning: gnlti136477981 has no strain. Using default strain.
Warning: gnlti136477983 has no strain. Using default strain.
Warning: gnlti136477984 has no strain. Using default strain.
Warning: gnlti136477987 has no strain. Using default strain.
Warning: gnlti136477988 has no strain. Using default strain.
Warning: gnlti136477989 has no strain. Using default strain.
Warning: gnlti136477994 has no strain. Using default strain.
Warning: gnlti136477995 has no strain. Using default strain.
Warning: gnlti136477997 has no strain. Using default strain.
Warning: gnlti136478003 has no strain. Using default strain.
Warning: gnlti136478006 has no strain. Using default strain.
Warning: gnlti136478008 has no strain. Using default strain.
Warning: gnlti136478011 has no strain. Using default strain.
Warning: gnlti136478012 has no strain. Using default strain.
Warning: gnlti136478015 has no strain. Using default strain.
Warning: gnlti136478019 has no strain. Using default strain.
Warning: gnlti136478020 has no strain. Using default strain.
Warning: gnlti136478024 has no strain. Using default strain.
Warning: gnlti136478031 has no strain. Using default strain.
Warning: gnlti136478032 has no strain. Using default strain.
Warning: gnlti136478033 has no strain. Using default strain.
Warning: gnlti136478037 has no strain. Using default strain.
Warning: gnlti136478042 has no strain. Using default strain.
Warning: gnlti136478047 has no strain. Using default strain.
Warning: gnlti136478048 has no strain. Using default strain.
Warning: gnlti136478051 has no strain. Using default strain.
Warning: gnlti136478053 has no strain. Using default strain.
Warning: gnlti136478057 has no strain. Using default strain.
Warning: gnlti136478064 has no strain. Using default strain.
Warning: gnlti136478070 has no strain. Using default strain.
Warning: gnlti136478072 has no strain. Using default strain.
Warning: gnlti136478078 has no strain. Using default strain.
Warning: gnlti136478079 has no strain. Using default strain.
Warning: gnlti136478081 has no strain. Using default strain.
Warning: gnlti136478082 has no strain. Using default strain.
Warning: gnlti136478084 has no strain. Using default strain.
Warning: gnlti136478090 has no strain. Using default strain.
Warning: gnlti136478092 has no strain. Using default strain.
Warning: gnlti136478094 has no strain. Using default strain.
Warning: gnlti136478100 has no strain. Using default strain.
Warning: gnlti136478102 has no strain. Using default strain.
Warning: gnlti136478106 has no strain. Using default strain.
Warning: gnlti136478109 has no strain. Using default strain.
Warning: gnlti136478111 has no strain. Using default strain.
Warning: gnlti136478116 has no strain. Using default strain.
Warning: gnlti136478117 has no strain. Using default strain.
Warning: gnlti136478120 has no strain. Using default strain.
Warning: gnlti136478121 has no strain. Using default strain.
Warning: gnlti136478127 has no strain. Using default strain.
Warning: gnlti136478135 has no strain. Using default strain.
Warning: gnlti136478139 has no strain. Using default strain.
Warning: gnlti136478144 has no strain. Using default strain.
Warning: gnlti136478149 has no strain. Using default strain.
Warning: gnlti136478151 has no strain. Using default strain.
Warning: gnlti136478153 has no strain. Using default strain.
Warning: gnlti136478160 has no strain. Using default strain.
Warning: gnlti136478166 has no strain. Using default strain.
Warning: gnlti136478173 has no strain. Using default strain.
Warning: gnlti136478176 has no strain. Using default strain.
Warning: gnlti136478177 has no strain. Using default strain.
Warning: gnlti136478185 has no strain. Using default strain.
Warning: gnlti136478191 has no strain. Using default strain.
Warning: gnlti136478194 has no strain. Using default strain.
Warning: gnlti136478200 has no strain. Using default strain.
Warning: gnlti136478201 has no strain. Using default strain.
Warning: gnlti136478205 has no strain. Using default strain.
Warning: gnlti136478210 has no strain. Using default strain.
Warning: gnlti136478212 has no strain. Using default strain.
Warning: gnlti136478215 has no strain. Using default strain.
Warning: gnlti136478217 has no strain. Using default strain.
Warning: gnlti136478219 has no strain. Using default strain.
Warning: gnlti136478220 has no strain. Using default strain.
Warning: gnlti136478224 has no strain. Using default strain.
Warning: gnlti136478225 has no strain. Using default strain.
Warning: gnlti136478235 has no strain. Using default strain.
Warning: gnlti136478236 has no strain. Using default strain.
Warning: gnlti136478238 has no strain. Using default strain.
Warning: gnlti136478242 has no strain. Using default strain.
Warning: gnlti136478243 has no strain. Using default strain.
Warning: gnlti136478245 has no strain. Using default strain.
Warning: gnlti136478246 has no strain. Using default strain.
Warning: gnlti136478248 has no strain. Using default strain.
Warning: gnlti136478250 has no strain. Using default strain.
Warning: gnlti136478255 has no strain. Using default strain.
Warning: gnlti136478257 has no strain. Using default strain.
Warning: gnlti136478263 has no strain. Using default strain.
Warning: gnlti136478264 has no strain. Using default strain.
Warning: gnlti136478267 has no strain. Using default strain.
Warning: gnlti136478272 has no strain. Using default strain.
Warning: gnlti136478273 has no strain. Using default strain.
Warning: gnlti136478276 has no strain. Using default strain.
Warning: gnlti136478278 has no strain. Using default strain.
Warning: gnlti136478279 has no strain. Using default strain.
Warning: gnlti136478283 has no strain. Using default strain.
Warning: gnlti136478284 has no strain. Using default strain.
Warning: gnlti136478286 has no strain. Using default strain.
Warning: gnlti136478287 has no strain. Using default strain.
Warning: gnlti136478290 has no strain. Using default strain.
Warning: gnlti136478291 has no strain. Using default strain.
Warning: gnlti136478292 has no strain. Using default strain.
Warning: gnlti136478298 has no strain. Using default strain.
Warning: gnlti136478301 has no strain. Using default strain.
Warning: gnlti136478311 has no strain. Using default strain.
Warning: gnlti136478312 has no strain. Using default strain.
Warning: gnlti136478313 has no strain. Using default strain.
Warning: gnlti136478314 has no strain. Using default strain.
Warning: gnlti136478318 has no strain. Using default strain.
Warning: gnlti136478323 has no strain. Using default strain.
Warning: gnlti136478324 has no strain. Using default strain.
Warning: gnlti136478325 has no strain. Using default strain.
Warning: gnlti136478326 has no strain. Using default strain.
Warning: gnlti136478328 has no strain. Using default strain.
Warning: gnlti136478334 has no strain. Using default strain.
Warning: gnlti136478335 has no strain. Using default strain.
Warning: gnlti136478336 has no strain. Using default strain.
Warning: gnlti136478337 has no strain. Using default strain.
Warning: gnlti136478341 has no strain. Using default strain.
Warning: gnlti136478350 has no strain. Using default strain.
Warning: gnlti136478353 has no strain. Using default strain.
Warning: gnlti136478354 has no strain. Using default strain.
Warning: gnlti136478360 has no strain. Using default strain.
Warning: gnlti136478365 has no strain. Using default strain.
Warning: gnlti136478366 has no strain. Using default strain.
Warning: gnlti136478367 has no strain. Using default strain.
Warning: gnlti136478373 has no strain. Using default strain.
Warning: gnlti136478374 has no strain. Using default strain.
Warning: gnlti136478375 has no strain. Using default strain.
Warning: gnlti136478377 has no strain. Using default strain.
Warning: gnlti136478378 has no strain. Using default strain.
Warning: gnlti136478379 has no strain. Using default strain.
Warning: gnlti136478384 has no strain. Using default strain.
Warning: gnlti136478389 has no strain. Using default strain.
Warning: gnlti136478391 has no strain. Using default strain.
Warning: gnlti136478393 has no strain. Using default strain.
Warning: gnlti136478394 has no strain. Using default strain.
Warning: gnlti136478395 has no strain. Using default strain.
Warning: gnlti136478398 has no strain. Using default strain.
Warning: gnlti136478400 has no strain. Using default strain.
Warning: gnlti136478403 has no strain. Using default strain.
Warning: gnlti136478406 has no strain. Using default strain.
Warning: gnlti136478413 has no strain. Using default strain.
Warning: gnlti136478414 has no strain. Using default strain.
Warning: gnlti136478416 has no strain. Using default strain.
Warning: gnlti136478419 has no strain. Using default strain.
Warning: gnlti136478420 has no strain. Using default strain.
Warning: gnlti136478432 has no strain. Using default strain.
Warning: gnlti136478433 has no strain. Using default strain.
Warning: gnlti136478434 has no strain. Using default strain.
Warning: gnlti136478437 has no strain. Using default strain.
Warning: gnlti136478438 has no strain. Using default strain.
Warning: gnlti136478440 has no strain. Using default strain.
Warning: gnlti136478449 has no strain. Using default strain.
Warning: gnlti136478450 has no strain. Using default strain.
Warning: gnlti136478451 has no strain. Using default strain.
Warning: gnlti136478452 has no strain. Using default strain.
Warning: gnlti136478454 has no strain. Using default strain.
Warning: gnlti136478455 has no strain. Using default strain.
Warning: gnlti136478460 has no strain. Using default strain.
Warning: gnlti136478461 has no strain. Using default strain.
Warning: gnlti136478466 has no strain. Using default strain.
Warning: gnlti136478473 has no strain. Using default strain.
Warning: gnlti136478479 has no strain. Using default strain.
Warning: gnlti136478481 has no strain. Using default strain.
Warning: gnlti136478482 has no strain. Using default strain.
Warning: gnlti136478483 has no strain. Using default strain.
Warning: gnlti136478491 has no strain. Using default strain.
Warning: gnlti136478497 has no strain. Using default strain.
Warning: gnlti136478499 has no strain. Using default strain.
Warning: gnlti136478505 has no strain. Using default strain.
Warning: gnlti136478508 has no strain. Using default strain.
Warning: gnlti136478510 has no strain. Using default strain.
Warning: gnlti136478512 has no strain. Using default strain.
Warning: gnlti136478514 has no strain. Using default strain.
Warning: gnlti136478515 has no strain. Using default strain.
Warning: gnlti136478517 has no strain. Using default strain.
Warning: gnlti136478521 has no strain. Using default strain.
Warning: gnlti136478522 has no strain. Using default strain.
Warning: gnlti136478526 has no strain. Using default strain.
Warning: gnlti136478529 has no strain. Using default strain.
Warning: gnlti136478530 has no strain. Using default strain.
Warning: gnlti136478531 has no strain. Using default strain.
Warning: gnlti136478532 has no strain. Using default strain.
Warning: gnlti136478535 has no strain. Using default strain.
Warning: gnlti136478539 has no strain. Using default strain.
Warning: gnlti136478541 has no strain. Using default strain.
Warning: gnlti136478542 has no strain. Using default strain.
Warning: gnlti136478552 has no strain. Using default strain.
Warning: gnlti136478556 has no strain. Using default strain.
Warning: gnlti136478565 has no strain. Using default strain.
Warning: gnlti136478571 has no strain. Using default strain.
Warning: gnlti136478575 has no strain. Using default strain.
Warning: gnlti136478576 has no strain. Using default strain.
Warning: gnlti136478579 has no strain. Using default strain.
Warning: gnlti136478584 has no strain. Using default strain.
Warning: gnlti136478589 has no strain. Using default strain.
Warning: gnlti136478590 has no strain. Using default strain.
Warning: gnlti136478592 has no strain. Using default strain.
Warning: gnlti136478600 has no strain. Using default strain.
Warning: gnlti136478605 has no strain. Using default strain.
Warning: gnlti136478607 has no strain. Using default strain.
Warning: gnlti136478608 has no strain. Using default strain.
Warning: gnlti136478615 has no strain. Using default strain.
Warning: gnlti136478616 has no strain. Using default strain.
Warning: gnlti136478624 has no strain. Using default strain.
Warning: gnlti136478626 has no strain. Using default strain.
Warning: gnlti136478627 has no strain. Using default strain.
Warning: gnlti136478630 has no strain. Using default strain.
Warning: gnlti136478635 has no strain. Using default strain.
Warning: gnlti136478637 has no strain. Using default strain.
Warning: gnlti136478638 has no strain. Using default strain.
Warning: gnlti136478640 has no strain. Using default strain.
Warning: gnlti136478644 has no strain. Using default strain.
Warning: gnlti136478647 has no strain. Using default strain.
Warning: gnlti136478648 has no strain. Using default strain.
Warning: gnlti136478652 has no strain. Using default strain.
Warning: gnlti136478661 has no strain. Using default strain.
Warning: gnlti136478663 has no strain. Using default strain.
Warning: gnlti136478665 has no strain. Using default strain.
Warning: gnlti136478667 has no strain. Using default strain.
Warning: gnlti136478668 has no strain. Using default strain.
Warning: gnlti136478670 has no strain. Using default strain.
Warning: gnlti136478678 has no strain. Using default strain.
Warning: gnlti136478683 has no strain. Using default strain.
Warning: gnlti136478684 has no strain. Using default strain.
Warning: gnlti136478686 has no strain. Using default strain.
Warning: gnlti136478687 has no strain. Using default strain.
Warning: gnlti136478688 has no strain. Using default strain.
Warning: gnlti136478693 has no strain. Using default strain.
Warning: gnlti136478694 has no strain. Using default strain.
Warning: gnlti136478695 has no strain. Using default strain.
Warning: gnlti136478697 has no strain. Using default strain.
Warning: gnlti136478700 has no strain. Using default strain.
Warning: gnlti136478702 has no strain. Using default strain.
Warning: gnlti136478705 has no strain. Using default strain.
Warning: gnlti136478706 has no strain. Using default strain.
Warning: gnlti136478708 has no strain. Using default strain.
Warning: gnlti136478710 has no strain. Using default strain.
Warning: gnlti136478713 has no strain. Using default strain.
Warning: gnlti136478717 has no strain. Using default strain.
Warning: gnlti136478720 has no strain. Using default strain.
Warning: gnlti136478723 has no strain. Using default strain.
Warning: gnlti136478725 has no strain. Using default strain.
Warning: gnlti136478726 has no strain. Using default strain.
Warning: gnlti136478728 has no strain. Using default strain.
Warning: gnlti136478730 has no strain. Using default strain.
Warning: gnlti136478736 has no strain. Using default strain.
Warning: gnlti136478739 has no strain. Using default strain.
Warning: gnlti136478751 has no strain. Using default strain.
Warning: gnlti136478752 has no strain. Using default strain.
Warning: gnlti136478755 has no strain. Using default strain.
Warning: gnlti136478757 has no strain. Using default strain.
Warning: gnlti136478759 has no strain. Using default strain.
Warning: gnlti136478771 has no strain. Using default strain.
Warning: gnlti136478775 has no strain. Using default strain.
Warning: gnlti136478785 has no strain. Using default strain.
Warning: gnlti136478791 has no strain. Using default strain.
Warning: gnlti136478792 has no strain. Using default strain.
Warning: gnlti136478794 has no strain. Using default strain.
Warning: gnlti136478801 has no strain. Using default strain.
Warning: gnlti136478802 has no strain. Using default strain.
Warning: gnlti136478805 has no strain. Using default strain.
Warning: gnlti136478807 has no strain. Using default strain.
Warning: gnlti136478809 has no strain. Using default strain.
Warning: gnlti136478813 has no strain. Using default strain.
Warning: gnlti136478815 has no strain. Using default strain.
Warning: gnlti136478816 has no strain. Using default strain.
Warning: gnlti136478819 has no strain. Using default strain.
Warning: gnlti136478821 has no strain. Using default strain.
Warning: gnlti136478822 has no strain. Using default strain.
Warning: gnlti136478827 has no strain. Using default strain.
Warning: gnlti136478830 has no strain. Using default strain.
Warning: gnlti136478833 has no strain. Using default strain.
Warning: gnlti136478836 has no strain. Using default strain.
Warning: gnlti136478837 has no strain. Using default strain.
Warning: gnlti136478838 has no strain. Using default strain.
Warning: gnlti136478840 has no strain. Using default strain.
Warning: gnlti136478843 has no strain. Using default strain.
Warning: gnlti136478844 has no strain. Using default strain.
Warning: gnlti136478846 has no strain. Using default strain.
Warning: gnlti136478847 has no strain. Using default strain.
Warning: gnlti136478849 has no strain. Using default strain.
Warning: gnlti136478851 has no strain. Using default strain.
Warning: gnlti136478852 has no strain. Using default strain.
Warning: gnlti136478856 has no strain. Using default strain.
Warning: gnlti136478860 has no strain. Using default strain.
Warning: gnlti136478861 has no strain. Using default strain.
Warning: gnlti136478863 has no strain. Using default strain.
Warning: gnlti136478864 has no strain. Using default strain.
Warning: gnlti136478872 has no strain. Using default strain.
Warning: gnlti136478873 has no strain. Using default strain.
Warning: gnlti136478874 has no strain. Using default strain.
Warning: gnlti136478875 has no strain. Using default strain.
Warning: gnlti136478882 has no strain. Using default strain.
Warning: gnlti136478884 has no strain. Using default strain.
Warning: gnlti136478886 has no strain. Using default strain.
Warning: gnlti136478890 has no strain. Using default strain.
Warning: gnlti136478892 has no strain. Using default strain.
Warning: gnlti136478893 has no strain. Using default strain.
Warning: gnlti136478894 has no strain. Using default strain.
Warning: gnlti136478899 has no strain. Using default strain.
Warning: gnlti136478901 has no strain. Using default strain.
Warning: gnlti136478903 has no strain. Using default strain.
Warning: gnlti136478904 has no strain. Using default strain.
Warning: gnlti136478905 has no strain. Using default strain.
Warning: gnlti136478906 has no strain. Using default strain.
Warning: gnlti136478907 has no strain. Using default strain.
Warning: gnlti136478910 has no strain. Using default strain.
Warning: gnlti136478916 has no strain. Using default strain.
Warning: gnlti136478919 has no strain. Using default strain.
Warning: gnlti136478923 has no strain. Using default strain.
Warning: gnlti136478925 has no strain. Using default strain.
Warning: gnlti136478926 has no strain. Using default strain.
Warning: gnlti136478928 has no strain. Using default strain.
Warning: gnlti136478933 has no strain. Using default strain.
Warning: gnlti136478934 has no strain. Using default strain.
Warning: gnlti136478940 has no strain. Using default strain.
Warning: gnlti136478941 has no strain. Using default strain.
Warning: gnlti136478944 has no strain. Using default strain.
Warning: gnlti136478952 has no strain. Using default strain.
Warning: gnlti136478955 has no strain. Using default strain.
Warning: gnlti136478956 has no strain. Using default strain.
Warning: gnlti136478959 has no strain. Using default strain.
Warning: gnlti136478960 has no strain. Using default strain.
Warning: gnlti136478967 has no strain. Using default strain.
Warning: gnlti136478981 has no strain. Using default strain.
Warning: gnlti136478982 has no strain. Using default strain.
Warning: gnlti136478984 has no strain. Using default strain.
Warning: gnlti136478987 has no strain. Using default strain.
Warning: gnlti136478989 has no strain. Using default strain.
Warning: gnlti136478990 has no strain. Using default strain.
Warning: gnlti136478992 has no strain. Using default strain.
Warning: gnlti136479004 has no strain. Using default strain.
Warning: gnlti136479006 has no strain. Using default strain.
Warning: gnlti136479009 has no strain. Using default strain.
Warning: gnlti136479010 has no strain. Using default strain.
Warning: gnlti136479013 has no strain. Using default strain.
Warning: gnlti136479014 has no strain. Using default strain.
Warning: gnlti136479015 has no strain. Using default strain.
Warning: gnlti136479016 has no strain. Using default strain.
Warning: gnlti136479018 has no strain. Using default strain.
Warning: gnlti136479020 has no strain. Using default strain.
Warning: gnlti136479022 has no strain. Using default strain.
Warning: gnlti136479024 has no strain. Using default strain.
Warning: gnlti136479027 has no strain. Using default strain.
Warning: gnlti136479028 has no strain. Using default strain.
Warning: gnlti136479030 has no strain. Using default strain.
Warning: gnlti136479033 has no strain. Using default strain.
Warning: gnlti136479034 has no strain. Using default strain.
Warning: gnlti136479035 has no strain. Using default strain.
Warning: gnlti136479036 has no strain. Using default strain.
Warning: gnlti136479039 has no strain. Using default strain.
Warning: gnlti136479040 has no strain. Using default strain.
Warning: gnlti136479042 has no strain. Using default strain.
Warning: gnlti136479043 has no strain. Using default strain.
Warning: gnlti136479044 has no strain. Using default strain.
Warning: gnlti136479046 has no strain. Using default strain.
Warning: gnlti136479051 has no strain. Using default strain.
Warning: gnlti136479055 has no strain. Using default strain.
Warning: gnlti136479056 has no strain. Using default strain.
Warning: gnlti136479058 has no strain. Using default strain.
Warning: gnlti136479059 has no strain. Using default strain.
Warning: gnlti136479060 has no strain. Using default strain.
Warning: gnlti136479063 has no strain. Using default strain.
Warning: gnlti136479064 has no strain. Using default strain.
Warning: gnlti136479065 has no strain. Using default strain.
Warning: gnlti136479066 has no strain. Using default strain.
Warning: gnlti136479067 has no strain. Using default strain.
Warning: gnlti136479069 has no strain. Using default strain.
Warning: gnlti136479070 has no strain. Using default strain.
Warning: gnlti136479071 has no strain. Using default strain.
Warning: gnlti136479073 has no strain. Using default strain.
Warning: gnlti136479074 has no strain. Using default strain.
Warning: gnlti136479076 has no strain. Using default strain.
Warning: gnlti136479079 has no strain. Using default strain.
Warning: gnlti136479081 has no strain. Using default strain.
Warning: gnlti136479083 has no strain. Using default strain.
Warning: gnlti136479084 has no strain. Using default strain.
Warning: gnlti136479085 has no strain. Using default strain.
Warning: gnlti136479086 has no strain. Using default strain.
Warning: gnlti136479088 has no strain. Using default strain.
Warning: gnlti136479092 has no strain. Using default strain.
Warning: gnlti136479094 has no strain. Using default strain.
Warning: gnlti136479097 has no strain. Using default strain.
Warning: gnlti136479101 has no strain. Using default strain.
Warning: gnlti136479103 has no strain. Using default strain.
Warning: gnlti136479104 has no strain. Using default strain.
Warning: gnlti136479105 has no strain. Using default strain.
Warning: gnlti136479107 has no strain. Using default strain.
Warning: gnlti136479110 has no strain. Using default strain.
Warning: gnlti136479123 has no strain. Using default strain.
Warning: gnlti136479127 has no strain. Using default strain.
Warning: gnlti136479139 has no strain. Using default strain.
Warning: gnlti136479140 has no strain. Using default strain.
Warning: gnlti136479144 has no strain. Using default strain.
Warning: gnlti136479145 has no strain. Using default strain.
Warning: gnlti136479147 has no strain. Using default strain.
Warning: gnlti136479151 has no strain. Using default strain.
Warning: gnlti136479152 has no strain. Using default strain.
Warning: gnlti136479157 has no strain. Using default strain.
Warning: gnlti136479159 has no strain. Using default strain.
Warning: gnlti136479161 has no strain. Using default strain.
Warning: gnlti136479162 has no strain. Using default strain.
Warning: gnlti136479164 has no strain. Using default strain.
Warning: gnlti136479166 has no strain. Using default strain.
Warning: gnlti136479169 has no strain. Using default strain.
Warning: gnlti136479172 has no strain. Using default strain.
Warning: gnlti136479173 has no strain. Using default strain.
Warning: gnlti136479174 has no strain. Using default strain.
Warning: gnlti136479180 has no strain. Using default strain.
Warning: gnlti136479181 has no strain. Using default strain.
Warning: gnlti136479184 has no strain. Using default strain.
Warning: gnlti136479188 has no strain. Using default strain.
Warning: gnlti136479198 has no strain. Using default strain.
Warning: gnlti136479202 has no strain. Using default strain.
Warning: gnlti136479203 has no strain. Using default strain.
Warning: gnlti136479206 has no strain. Using default strain.
Warning: gnlti136479208 has no strain. Using default strain.
Warning: gnlti136479209 has no strain. Using default strain.
Warning: gnlti136479210 has no strain. Using default strain.
Warning: gnlti136479215 has no strain. Using default strain.
Warning: gnlti136479216 has no strain. Using default strain.
Warning: gnlti136479217 has no strain. Using default strain.
Warning: gnlti136479221 has no strain. Using default strain.
Warning: gnlti136479222 has no strain. Using default strain.
Warning: gnlti136479223 has no strain. Using default strain.
Warning: gnlti136479225 has no strain. Using default strain.
Warning: gnlti136479226 has no strain. Using default strain.
Warning: gnlti136479229 has no strain. Using default strain.
Warning: gnlti136479233 has no strain. Using default strain.
Warning: gnlti136479237 has no strain. Using default strain.
Warning: gnlti136479240 has no strain. Using default strain.
Warning: gnlti136479242 has no strain. Using default strain.
Warning: gnlti136479243 has no strain. Using default strain.
Warning: gnlti136479247 has no strain. Using default strain.
Warning: gnlti136479252 has no strain. Using default strain.
Warning: gnlti136479256 has no strain. Using default strain.
Warning: gnlti136479257 has no strain. Using default strain.
Warning: gnlti136479258 has no strain. Using default strain.
Warning: gnlti136479259 has no strain. Using default strain.
Warning: gnlti136479262 has no strain. Using default strain.
Warning: gnlti136479264 has no strain. Using default strain.
Warning: gnlti136479266 has no strain. Using default strain.
Warning: gnlti136479267 has no strain. Using default strain.
Warning: gnlti136479268 has no strain. Using default strain.
Warning: gnlti136479273 has no strain. Using default strain.
Warning: gnlti136479274 has no strain. Using default strain.
Warning: gnlti136479278 has no strain. Using default strain.
Warning: gnlti136479280 has no strain. Using default strain.
Warning: gnlti136479285 has no strain. Using default strain.
Warning: gnlti136479286 has no strain. Using default strain.
Warning: gnlti136479287 has no strain. Using default strain.
Warning: gnlti136479291 has no strain. Using default strain.
Warning: gnlti136479293 has no strain. Using default strain.
Warning: gnlti136479295 has no strain. Using default strain.
Warning: gnlti136479296 has no strain. Using default strain.
Warning: gnlti136479297 has no strain. Using default strain.
Warning: gnlti136479298 has no strain. Using default strain.
Warning: gnlti136479302 has no strain. Using default strain.
Warning: gnlti136479304 has no strain. Using default strain.
Warning: gnlti136479307 has no strain. Using default strain.
Warning: gnlti136479309 has no strain. Using default strain.
Warning: gnlti136479318 has no strain. Using default strain.
Warning: gnlti136479322 has no strain. Using default strain.
Warning: gnlti136479332 has no strain. Using default strain.
Warning: gnlti136479336 has no strain. Using default strain.
Warning: gnlti136479342 has no strain. Using default strain.
Warning: gnlti136479343 has no strain. Using default strain.
Warning: gnlti136479344 has no strain. Using default strain.
Warning: gnlti136479345 has no strain. Using default strain.
Warning: gnlti136479346 has no strain. Using default strain.
Warning: gnlti136479348 has no strain. Using default strain.
Warning: gnlti136479353 has no strain. Using default strain.
Warning: gnlti136479354 has no strain. Using default strain.
Warning: gnlti136479356 has no strain. Using default strain.
Warning: gnlti136479357 has no strain. Using default strain.
Warning: gnlti136479363 has no strain. Using default strain.
Warning: gnlti136479365 has no strain. Using default strain.
Warning: gnlti136479369 has no strain. Using default strain.
Warning: gnlti136479372 has no strain. Using default strain.
Warning: gnlti136479376 has no strain. Using default strain.
Warning: gnlti136479379 has no strain. Using default strain.
Warning: gnlti136479386 has no strain. Using default strain.
Warning: gnlti136479387 has no strain. Using default strain.
Warning: gnlti136479388 has no strain. Using default strain.
Warning: gnlti136479389 has no strain. Using default strain.
Warning: gnlti136479391 has no strain. Using default strain.
Warning: gnlti136479394 has no strain. Using default strain.
Warning: gnlti136479400 has no strain. Using default strain.
Warning: gnlti136479402 has no strain. Using default strain.
Warning: gnlti136479406 has no strain. Using default strain.
Warning: gnlti136479407 has no strain. Using default strain.
Warning: gnlti136479409 has no strain. Using default strain.
Warning: gnlti136479410 has no strain. Using default strain.
Warning: gnlti136479411 has no strain. Using default strain.
Warning: gnlti136479413 has no strain. Using default strain.
Warning: gnlti136479414 has no strain. Using default strain.
Warning: gnlti136479420 has no strain. Using default strain.
Warning: gnlti136479421 has no strain. Using default strain.
Warning: gnlti136479425 has no strain. Using default strain.
Warning: gnlti136479427 has no strain. Using default strain.
Warning: gnlti136479428 has no strain. Using default strain.
Warning: gnlti136479429 has no strain. Using default strain.
Warning: gnlti136479435 has no strain. Using default strain.
Warning: gnlti136479436 has no strain. Using default strain.
Warning: gnlti136479437 has no strain. Using default strain.
Warning: gnlti136479441 has no strain. Using default strain.
Warning: gnlti136479444 has no strain. Using default strain.
Warning: gnlti136479447 has no strain. Using default strain.
Warning: gnlti136479455 has no strain. Using default strain.
Warning: gnlti136479459 has no strain. Using default strain.
Warning: gnlti136479460 has no strain. Using default strain.
Warning: gnlti136479463 has no strain. Using default strain.
Warning: gnlti136479466 has no strain. Using default strain.
Warning: gnlti136479467 has no strain. Using default strain.
Warning: gnlti136479470 has no strain. Using default strain.
Warning: gnlti136479471 has no strain. Using default strain.
Warning: gnlti136479476 has no strain. Using default strain.
Warning: gnlti136479478 has no strain. Using default strain.
Warning: gnlti136479479 has no strain. Using default strain.
Warning: gnlti136479480 has no strain. Using default strain.
Warning: gnlti136479489 has no strain. Using default strain.
Warning: gnlti136479490 has no strain. Using default strain.
Warning: gnlti136479492 has no strain. Using default strain.
Warning: gnlti136479495 has no strain. Using default strain.
Warning: gnlti136479499 has no strain. Using default strain.
Warning: gnlti136479500 has no strain. Using default strain.
Warning: gnlti136479501 has no strain. Using default strain.
Warning: gnlti136479506 has no strain. Using default strain.
Warning: gnlti136479507 has no strain. Using default strain.
Warning: gnlti136479509 has no strain. Using default strain.
Warning: gnlti136479510 has no strain. Using default strain.
Warning: gnlti136479511 has no strain. Using default strain.
Warning: gnlti136479514 has no strain. Using default strain.
Warning: gnlti136479515 has no strain. Using default strain.
Warning: gnlti136479518 has no strain. Using default strain.
Warning: gnlti136479520 has no strain. Using default strain.
Warning: gnlti136479522 has no strain. Using default strain.
Warning: gnlti136479523 has no strain. Using default strain.
Warning: gnlti136479525 has no strain. Using default strain.
Warning: gnlti136479526 has no strain. Using default strain.
Warning: gnlti136479530 has no strain. Using default strain.
Warning: gnlti136479532 has no strain. Using default strain.
Warning: gnlti136479535 has no strain. Using default strain.
Warning: gnlti136479536 has no strain. Using default strain.
Warning: gnlti136479537 has no strain. Using default strain.
Warning: gnlti136479539 has no strain. Using default strain.
Warning: gnlti136479540 has no strain. Using default strain.
Warning: gnlti136479542 has no strain. Using default strain.
Warning: gnlti136479545 has no strain. Using default strain.
Warning: gnlti136479547 has no strain. Using default strain.
Warning: gnlti136479548 has no strain. Using default strain.
Warning: gnlti136479551 has no strain. Using default strain.
Warning: gnlti136479552 has no strain. Using default strain.
Warning: gnlti136479553 has no strain. Using default strain.
Warning: gnlti136479565 has no strain. Using default strain.
Warning: gnlti136479566 has no strain. Using default strain.
Warning: gnlti136479568 has no strain. Using default strain.
Warning: gnlti136479573 has no strain. Using default strain.
Warning: gnlti136479574 has no strain. Using default strain.
Warning: gnlti136479576 has no strain. Using default strain.
Warning: gnlti136479587 has no strain. Using default strain.
Warning: gnlti136479588 has no strain. Using default strain.
Warning: gnlti136479591 has no strain. Using default strain.
Warning: gnlti136479593 has no strain. Using default strain.
Warning: gnlti136479594 has no strain. Using default strain.
Warning: gnlti136479595 has no strain. Using default strain.
Warning: gnlti136479601 has no strain. Using default strain.
Warning: gnlti136479609 has no strain. Using default strain.
Warning: gnlti136479614 has no strain. Using default strain.
Warning: gnlti136479621 has no strain. Using default strain.
Warning: gnlti136479626 has no strain. Using default strain.
Warning: gnlti136479627 has no strain. Using default strain.
Warning: gnlti136479629 has no strain. Using default strain.
Warning: gnlti136479630 has no strain. Using default strain.
Warning: gnlti136479631 has no strain. Using default strain.
Warning: gnlti136479633 has no strain. Using default strain.
Warning: gnlti136479636 has no strain. Using default strain.
Warning: gnlti136479637 has no strain. Using default strain.
Warning: gnlti136479642 has no strain. Using default strain.
Warning: gnlti136479643 has no strain. Using default strain.
Warning: gnlti136479644 has no strain. Using default strain.
Warning: gnlti136479645 has no strain. Using default strain.
Warning: gnlti136479646 has no strain. Using default strain.
Warning: gnlti136479648 has no strain. Using default strain.
Warning: gnlti136479651 has no strain. Using default strain.
Warning: gnlti136479658 has no strain. Using default strain.
Warning: gnlti136479659 has no strain. Using default strain.
Warning: gnlti136479666 has no strain. Using default strain.
Warning: gnlti136479669 has no strain. Using default strain.
Warning: gnlti136479671 has no strain. Using default strain.
Warning: gnlti136479677 has no strain. Using default strain.
Warning: gnlti136479679 has no strain. Using default strain.
Warning: gnlti136479680 has no strain. Using default strain.
Warning: gnlti136479692 has no strain. Using default strain.
Warning: gnlti136479693 has no strain. Using default strain.
Warning: gnlti136479695 has no strain. Using default strain.
Warning: gnlti136479698 has no strain. Using default strain.
Warning: gnlti136479699 has no strain. Using default strain.
Warning: gnlti136479701 has no strain. Using default strain.
Warning: gnlti136479702 has no strain. Using default strain.
Warning: gnlti136479705 has no strain. Using default strain.
Warning: gnlti136479708 has no strain. Using default strain.
Warning: gnlti136479716 has no strain. Using default strain.
Warning: gnlti136479721 has no strain. Using default strain.
Warning: gnlti136479723 has no strain. Using default strain.
Warning: gnlti136479724 has no strain. Using default strain.
Warning: gnlti136479725 has no strain. Using default strain.
Warning: gnlti136479726 has no strain. Using default strain.
Warning: gnlti136479729 has no strain. Using default strain.
Warning: gnlti136479730 has no strain. Using default strain.
Warning: gnlti136479731 has no strain. Using default strain.
Warning: gnlti136479733 has no strain. Using default strain.
Warning: gnlti136479734 has no strain. Using default strain.
Warning: gnlti136479742 has no strain. Using default strain.
Warning: gnlti136479748 has no strain. Using default strain.
Warning: gnlti136479751 has no strain. Using default strain.
Warning: gnlti136479757 has no strain. Using default strain.
Warning: gnlti136479760 has no strain. Using default strain.
Warning: gnlti136479764 has no strain. Using default strain.
Warning: gnlti136479766 has no strain. Using default strain.
Warning: gnlti136479769 has no strain. Using default strain.
Warning: gnlti136479771 has no strain. Using default strain.
Warning: gnlti136479772 has no strain. Using default strain.
Warning: gnlti136479775 has no strain. Using default strain.
Warning: gnlti136479777 has no strain. Using default strain.
Warning: gnlti136479778 has no strain. Using default strain.
Warning: gnlti136479779 has no strain. Using default strain.
Warning: gnlti136479781 has no strain. Using default strain.
Warning: gnlti136479783 has no strain. Using default strain.
Warning: gnlti136479784 has no strain. Using default strain.
Warning: gnlti136479788 has no strain. Using default strain.
Warning: gnlti136479791 has no strain. Using default strain.
Warning: gnlti136479792 has no strain. Using default strain.
Warning: gnlti136479793 has no strain. Using default strain.
Warning: gnlti136479796 has no strain. Using default strain.
Warning: gnlti136479797 has no strain. Using default strain.
Warning: gnlti136479798 has no strain. Using default strain.
Warning: gnlti136479801 has no strain. Using default strain.
Warning: gnlti136479810 has no strain. Using default strain.
Warning: gnlti136479811 has no strain. Using default strain.
Warning: gnlti136479815 has no strain. Using default strain.
Warning: gnlti136479818 has no strain. Using default strain.
Warning: gnlti136479819 has no strain. Using default strain.
Warning: gnlti136479820 has no strain. Using default strain.
Warning: gnlti136479821 has no strain. Using default strain.
Warning: gnlti136479823 has no strain. Using default strain.
Warning: gnlti136479827 has no strain. Using default strain.
Warning: gnlti136479828 has no strain. Using default strain.
Warning: gnlti136479829 has no strain. Using default strain.
Warning: gnlti136479831 has no strain. Using default strain.
Warning: gnlti136479833 has no strain. Using default strain.
Warning: gnlti136479837 has no strain. Using default strain.
Warning: gnlti136479838 has no strain. Using default strain.
Warning: gnlti136479842 has no strain. Using default strain.
Warning: gnlti136479845 has no strain. Using default strain.
Warning: gnlti136479846 has no strain. Using default strain.
Warning: gnlti136479848 has no strain. Using default strain.
Warning: gnlti136479849 has no strain. Using default strain.
Warning: gnlti136479850 has no strain. Using default strain.
Warning: gnlti136479851 has no strain. Using default strain.
Warning: gnlti136479853 has no strain. Using default strain.
Warning: gnlti136479854 has no strain. Using default strain.
Warning: gnlti136479860 has no strain. Using default strain.
Warning: gnlti136479862 has no strain. Using default strain.
Warning: gnlti136479865 has no strain. Using default strain.
Warning: gnlti136479873 has no strain. Using default strain.
Warning: gnlti136479880 has no strain. Using default strain.
Warning: gnlti136479882 has no strain. Using default strain.
Warning: gnlti136479884 has no strain. Using default strain.


Starting minimum left vector clip ... done.
Pool has 801 reads .
Checking reads for trace data:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
No SCF data present in any read, automatic contig editing is now switched off.
801 reads with valid data for assembly.

For the reads that are neither backbones nor rails:
- 0 reads have not enough good bases for assembly.
- 801 reads used for assembly.
- 0 reads have no real quality (see miralog.noqualities).
- mean length of good parts of used reads: 397
Localtime: Thu Jul 15 12:00:00 2010

Generated 801 unique template ids for 801 valid reads.
No useful template information found, template routines will not be used.
Localtime: Thu Jul 15 12:00:00 2010

Generated 0 unique strain ids for 801 reads.

Localtime: Thu Jul 15 12:00:00 2010


Searching for possible overlaps:
Localtime: Thu Jul 15 12:00:00 2010
We will get 1 partitions.
Progressend: 1602
Now running partitioned skimmer with 1 partitions:

Working on partition 1/1
Will contain read IDs 0 to 800
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
Total megahubs: 0

Skim summary:
	accepted: 1336
	possible: 108907
	permbans: 0

Hits chosen: 1239

Localtime: Thu Jul 15 12:00:00 2010

Pre-assembly alignment search for read extension and / or vector clipping:
Making alignments.
Localtime: Thu Jul 15 12:00:00 2010

Aligning possible forward matches:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
Localtime: Thu Jul 15 12:00:00 2010

Aligning possible complement matches:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
Localtime: Thu Jul 15 12:00:00 2010

Calculating possible vector leftovers ... done.

Loading confirmed overlaps from disk (will need approximately 1 M.):
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 

Sorting confirmed overlaps (this may take a while) ... done.

Generating clusters:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 

Pre-assembly vector clipping

Performing vector clipping ... done.
Pool has 801 reads .
Checking reads for trace data:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
No SCF data present in any read, automatic contig editing is now switched off.
801 reads with valid data for assembly.

For the reads that are neither backbones nor rails:
- 0 reads have not enough good bases for assembly.
- 801 reads used for assembly.
- 0 reads have no real quality (see miralog.noqualities).
- mean length of good parts of used reads: 397
Localtime: Thu Jul 15 12:00:00 2010

Generated 801 unique template ids for 801 valid reads.
No useful template information found, template routines will not be used.
Localtime: Thu Jul 15 12:00:00 2010

Generated 0 unique strain ids for 801 reads.

Localtime: Thu Jul 15 12:00:00 2010


Searching for possible overlaps:
Localtime: Thu Jul 15 12:00:00 2010
We will get 1 partitions.
Progressend: 1602
Now running partitioned skimmer with 1 partitions:

Working on partition 1/1
Will contain read IDs 0 to 800
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
Total megahubs: 0

Skim summary:
	accepted: 1268
	possible: 108907
	permbans: 83

Hits chosen: 1171

Localtime: Thu Jul 15 12:00:00 2010



Pass: 1
Making alignments.
Localtime: Thu Jul 15 12:00:00 2010

Aligning possible forward matches:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
Localtime: Thu Jul 15 12:00:00 2010

Aligning possible complement matches:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
Localtime: Thu Jul 15 12:00:00 2010

Calculating possible vector leftovers ... done.

Loading confirmed overlaps from disk (will need approximately 1 M.):
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 

Sorting confirmed overlaps (this may take a while) ... done.

Generating clusters:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 

Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 801
+[1] ++++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1
Contig length: 611
Avg. contig coverage: 3.53
Consensus contains:	A: 145	C: 129	G: 156	T: 158	N: 0
			IUPAC: 21	Funny: 0	*: 2

Num reads: 5
Avg. read length: 432
Reads contain 2153 bases, 1 Ns and 7 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 2
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 796
+[1] +++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 2
Contig length: 382
Avg. contig coverage: 3.77
Consensus contains:	A: 125	C: 75	G: 114	T: 68	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 4
Avg. read length: 360
Reads contain 1442 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 3
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 792
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 3
Contig length: 563
Avg. contig coverage: 2.94
Consensus contains:	A: 168	C: 112	G: 146	T: 136	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 3
Avg. read length: 553
Reads contain 1653 bases, 5 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 4
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 789
+[1] +a++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 4
Contig length: 700
Avg. contig coverage: 2.43
Consensus contains:	A: 160	C: 159	G: 204	T: 173	N: 0
			IUPAC: 2	Funny: 0	*: 2

Num reads: 4
Avg. read length: 425
Reads contain 1699 bases, 0 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 5
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 785
+[1] +++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 5
Contig length: 638
Avg. contig coverage: 2.57
Consensus contains:	A: 169	C: 179	G: 122	T: 163	N: 0
			IUPAC: 5	Funny: 0	*: 0

Num reads: 4
Avg. read length: 410
Reads contain 1641 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 6
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 781
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 6
Contig length: 589
Avg. contig coverage: 2.68
Consensus contains:	A: 128	C: 189	G: 110	T: 162	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 3
Avg. read length: 526
Reads contain 1579 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 7
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 778
+[1] +++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 7
Contig length: 422
Avg. contig coverage: 3.53
Consensus contains:	A: 113	C: 73	G: 91	T: 129	N: 0
			IUPAC: 15	Funny: 0	*: 1

Num reads: 4
Avg. read length: 372
Reads contain 1485 bases, 0 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 8
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 774
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 8
Contig length: 504
Avg. contig coverage: 2.92
Consensus contains:	A: 132	C: 128	G: 116	T: 119	N: 0
			IUPAC: 7	Funny: 0	*: 2

Num reads: 3
Avg. read length: 490
Reads contain 1466 bases, 1 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 9
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 771
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 9
Contig length: 602
Avg. contig coverage: 2.57
Consensus contains:	A: 155	C: 151	G: 135	T: 161	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 3
Avg. read length: 517
Reads contain 1551 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 10
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 768
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 10
Contig length: 625
Avg. contig coverage: 2.49
Consensus contains:	A: 155	C: 122	G: 175	T: 171	N: 0
			IUPAC: 1	Funny: 0	*: 1

Num reads: 3
Avg. read length: 520
Reads contain 1554 bases, 1 Ns and 7 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 11
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 765
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 11
Contig length: 462
Avg. contig coverage: 2.78
Consensus contains:	A: 106	C: 89	G: 113	T: 153	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 3
Avg. read length: 429
Reads contain 1285 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 12
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 762
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 12
Contig length: 467
Avg. contig coverage: 2.81
Consensus contains:	A: 118	C: 151	G: 78	T: 114	N: 0
			IUPAC: 6	Funny: 0	*: 0

Num reads: 3
Avg. read length: 438
Reads contain 1315 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 13
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 759
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 13
Contig length: 680
Avg. contig coverage: 2.53
Consensus contains:	A: 174	C: 134	G: 187	T: 181	N: 0
			IUPAC: 1	Funny: 0	*: 3

Num reads: 3
Avg. read length: 574
Reads contain 1718 bases, 1 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 14
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 756
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 14
Contig length: 440
Avg. contig coverage: 2.87
Consensus contains:	A: 124	C: 105	G: 102	T: 109	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 3
Avg. read length: 422
Reads contain 1265 bases, 1 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 15
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 753
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 15
Contig length: 695
Avg. contig coverage: 2.1
Consensus contains:	A: 198	C: 173	G: 138	T: 185	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 3
Avg. read length: 488
Reads contain 1464 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 16
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 750
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 16
Contig length: 542
Avg. contig coverage: 2.52
Consensus contains:	A: 143	C: 133	G: 137	T: 125	N: 0
			IUPAC: 1	Funny: 0	*: 3

Num reads: 3
Avg. read length: 456
Reads contain 1360 bases, 1 Ns and 8 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 17
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 747
+[1] +a
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 17
Contig length: 546
Avg. contig coverage: 1.96
Consensus contains:	A: 155	C: 134	G: 133	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 535
Reads contain 1071 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 18
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 745
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 18
Contig length: 580
Avg. contig coverage: 2.61
Consensus contains:	A: 134	C: 144	G: 158	T: 117	N: 0
			IUPAC: 25	Funny: 0	*: 2

Num reads: 3
Avg. read length: 506
Reads contain 1512 bases, 1 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 19
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 742
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 19
Contig length: 490
Avg. contig coverage: 2.6
Consensus contains:	A: 131	C: 93	G: 126	T: 136	N: 0
			IUPAC: 2	Funny: 0	*: 2

Num reads: 3
Avg. read length: 424
Reads contain 1270 bases, 0 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 20
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 739
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 20
Contig length: 519
Avg. contig coverage: 2.75
Consensus contains:	A: 143	C: 129	G: 78	T: 150	N: 0
			IUPAC: 18	Funny: 0	*: 1

Num reads: 3
Avg. read length: 476
Reads contain 1428 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 21
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 736
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 21
Contig length: 538
Avg. contig coverage: 2.48
Consensus contains:	A: 133	C: 147	G: 100	T: 153	N: 0
			IUPAC: 5	Funny: 0	*: 0

Num reads: 3
Avg. read length: 446
Reads contain 1337 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 22
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 733
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 22
Contig length: 540
Avg. contig coverage: 2.73
Consensus contains:	A: 152	C: 128	G: 91	T: 167	N: 0
			IUPAC: 0	Funny: 0	*: 2

Num reads: 3
Avg. read length: 492
Reads contain 1472 bases, 0 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 23
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 730
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 23
Contig length: 377
Avg. contig coverage: 2.93
Consensus contains:	A: 86	C: 104	G: 85	T: 100	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 3
Avg. read length: 368
Reads contain 1101 bases, 3 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 24
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 727
+[1] +++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 24
Contig length: 464
Avg. contig coverage: 3.61
Consensus contains:	A: 125	C: 121	G: 92	T: 109	N: 0
			IUPAC: 9	Funny: 0	*: 8

Num reads: 4
Avg. read length: 419
Reads contain 1653 bases, 0 Ns and 24 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 25
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 723
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 25
Contig length: 589
Avg. contig coverage: 2.17
Consensus contains:	A: 185	C: 139	G: 113	T: 151	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 3
Avg. read length: 427
Reads contain 1281 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 26
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 720
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 26
Contig length: 511
Avg. contig coverage: 2.68
Consensus contains:	A: 138	C: 148	G: 102	T: 122	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 3
Avg. read length: 457
Reads contain 1373 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 27
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 717
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 27
Contig length: 548
Avg. contig coverage: 2.2
Consensus contains:	A: 109	C: 114	G: 116	T: 209	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 3
Avg. read length: 402
Reads contain 1207 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 28
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 714
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 28
Contig length: 530
Avg. contig coverage: 2.41
Consensus contains:	A: 160	C: 119	G: 125	T: 117	N: 0
			IUPAC: 5	Funny: 0	*: 4

Num reads: 3
Avg. read length: 426
Reads contain 1273 bases, 1 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 29
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 711
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 29
Contig length: 523
Avg. contig coverage: 2.43
Consensus contains:	A: 136	C: 126	G: 126	T: 127	N: 0
			IUPAC: 6	Funny: 0	*: 2

Num reads: 3
Avg. read length: 424
Reads contain 1267 bases, 0 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 30
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 708
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 30
Contig length: 382
Avg. contig coverage: 2.72
Consensus contains:	A: 84	C: 96	G: 86	T: 115	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 3
Avg. read length: 346
Reads contain 1040 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 31
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 705
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 31
Contig length: 576
Avg. contig coverage: 2.3
Consensus contains:	A: 178	C: 145	G: 103	T: 136	N: 0
			IUPAC: 12	Funny: 0	*: 2

Num reads: 3
Avg. read length: 442
Reads contain 1323 bases, 0 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 32
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 702
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 32
Contig length: 415
Avg. contig coverage: 2.86
Consensus contains:	A: 95	C: 127	G: 87	T: 104	N: 0
			IUPAC: 1	Funny: 0	*: 1

Num reads: 3
Avg. read length: 396
Reads contain 1183 bases, 0 Ns and 7 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 33
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 699
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 33
Contig length: 577
Avg. contig coverage: 2.22
Consensus contains:	A: 194	C: 113	G: 109	T: 154	N: 2
			IUPAC: 0	Funny: 0	*: 5

Num reads: 3
Avg. read length: 427
Reads contain 1271 bases, 2 Ns and 10 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 34
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 696
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 34
Contig length: 621
Avg. contig coverage: 2.08
Consensus contains:	A: 164	C: 163	G: 128	T: 158	N: 0
			IUPAC: 8	Funny: 0	*: 0

Num reads: 3
Avg. read length: 431
Reads contain 1295 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 35
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 693
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 35
Contig length: 414
Avg. contig coverage: 2.88
Consensus contains:	A: 80	C: 117	G: 103	T: 101	N: 0
			IUPAC: 9	Funny: 0	*: 4

Num reads: 3
Avg. read length: 398
Reads contain 1187 bases, 0 Ns and 9 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 36
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 690
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 36
Contig length: 694
Avg. contig coverage: 1.98
Consensus contains:	A: 225	C: 180	G: 119	T: 168	N: 0
			IUPAC: 1	Funny: 0	*: 1

Num reads: 3
Avg. read length: 459
Reads contain 1376 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 37
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 687
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 37
Contig length: 451
Avg. contig coverage: 2.42
Consensus contains:	A: 100	C: 132	G: 115	T: 100	N: 0
			IUPAC: 2	Funny: 0	*: 2

Num reads: 3
Avg. read length: 365
Reads contain 1093 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 38
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 684
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 38
Contig length: 608
Avg. contig coverage: 1.96
Consensus contains:	A: 184	C: 118	G: 156	T: 150	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 597
Reads contain 1195 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 39
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 682
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 39
Contig length: 482
Avg. contig coverage: 2.37
Consensus contains:	A: 99	C: 131	G: 103	T: 148	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 3
Avg. read length: 381
Reads contain 1143 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 40
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 679
+[1] +++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 40
Contig length: 412
Avg. contig coverage: 3.59
Consensus contains:	A: 114	C: 86	G: 89	T: 107	N: 0
			IUPAC: 12	Funny: 0	*: 4

Num reads: 4
Avg. read length: 370
Reads contain 1473 bases, 0 Ns and 8 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 41
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 675
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 41
Contig length: 929
Avg. contig coverage: 1.67
Consensus contains:	A: 277	C: 179	G: 187	T: 283	N: 0
			IUPAC: 1	Funny: 0	*: 2

Num reads: 3
Avg. read length: 520
Reads contain 1554 bases, 1 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 42
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 672
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 42
Contig length: 569
Avg. contig coverage: 2.44
Consensus contains:	A: 130	C: 142	G: 144	T: 124	N: 0
			IUPAC: 29	Funny: 0	*: 0

Num reads: 3
Avg. read length: 464
Reads contain 1391 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 43
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 669
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 43
Contig length: 585
Avg. contig coverage: 2.21
Consensus contains:	A: 180	C: 139	G: 109	T: 143	N: 0
			IUPAC: 13	Funny: 0	*: 1

Num reads: 3
Avg. read length: 432
Reads contain 1295 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 44
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 666
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 44
Contig length: 938
Avg. contig coverage: 1.65
Consensus contains:	A: 253	C: 280	G: 185	T: 218	N: 0
			IUPAC: 1	Funny: 0	*: 1

Num reads: 3
Avg. read length: 517
Reads contain 1549 bases, 1 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 45
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 663
+[1] +a
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 45
Contig length: 509
Avg. contig coverage: 1.65
Consensus contains:	A: 122	C: 115	G: 161	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 420
Reads contain 840 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 46
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 661
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 46
Contig length: 602
Avg. contig coverage: 2.2
Consensus contains:	A: 156	C: 131	G: 133	T: 177	N: 0
			IUPAC: 0	Funny: 0	*: 5

Num reads: 3
Avg. read length: 442
Reads contain 1319 bases, 0 Ns and 7 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 47
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 658
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 47
Contig length: 637
Avg. contig coverage: 1.91
Consensus contains:	A: 107	C: 187	G: 104	T: 239	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 610
Reads contain 1218 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 48
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 656
+[1] ++++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 48
Contig length: 523
Avg. contig coverage: 3.47
Consensus contains:	A: 140	C: 112	G: 127	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 3

Num reads: 5
Avg. read length: 363
Reads contain 1808 bases, 0 Ns and 9 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 49
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 651
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 49
Contig length: 425
Avg. contig coverage: 2.35
Consensus contains:	A: 91	C: 93	G: 151	T: 89	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 3
Avg. read length: 333
Reads contain 1001 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 50
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 648
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 50
Contig length: 378
Avg. contig coverage: 2.47
Consensus contains:	A: 138	C: 100	G: 54	T: 84	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 3
Avg. read length: 311
Reads contain 935 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 51
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 645
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 51
Contig length: 448
Avg. contig coverage: 2.26
Consensus contains:	A: 100	C: 106	G: 137	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 3
Avg. read length: 338
Reads contain 1014 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 52
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 642
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 52
Contig length: 485
Avg. contig coverage: 2.24
Consensus contains:	A: 146	C: 100	G: 109	T: 124	N: 0
			IUPAC: 4	Funny: 0	*: 2

Num reads: 3
Avg. read length: 362
Reads contain 1083 bases, 0 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 53
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 639
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 53
Contig length: 1030
Avg. contig coverage: 1.54
Consensus contains:	A: 246	C: 212	G: 296	T: 275	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 3
Avg. read length: 531
Reads contain 1594 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 54
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 636
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 54
Contig length: 527
Avg. contig coverage: 1.97
Consensus contains:	A: 164	C: 125	G: 100	T: 138	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 520
Reads contain 1040 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 55
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 634
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 55
Contig length: 667
Avg. contig coverage: 2.07
Consensus contains:	A: 182	C: 166	G: 137	T: 178	N: 0
			IUPAC: 1	Funny: 0	*: 3

Num reads: 3
Avg. read length: 460
Reads contain 1373 bases, 1 Ns and 8 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 56
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 631
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 56
Contig length: 537
Avg. contig coverage: 1.96
Consensus contains:	A: 159	C: 141	G: 119	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 528
Reads contain 1057 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 57
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 629
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 57
Contig length: 502
Avg. contig coverage: 2
Consensus contains:	A: 165	C: 112	G: 117	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 502
Reads contain 1004 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 58
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 627
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 58
Contig length: 369
Avg. contig coverage: 2.61
Consensus contains:	A: 95	C: 89	G: 69	T: 110	N: 0
			IUPAC: 5	Funny: 0	*: 1

Num reads: 3
Avg. read length: 322
Reads contain 962 bases, 0 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 59
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 624
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 59
Contig length: 333
Avg. contig coverage: 2.61
Consensus contains:	A: 88	C: 71	G: 75	T: 95	N: 0
			IUPAC: 4	Funny: 0	*: 0

Num reads: 3
Avg. read length: 290
Reads contain 868 bases, 1 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 60
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 621
+[1] +++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 60
Contig length: 770
Avg. contig coverage: 2.31
Consensus contains:	A: 175	C: 196	G: 184	T: 205	N: 0
			IUPAC: 7	Funny: 0	*: 3

Num reads: 4
Avg. read length: 446
Reads contain 1775 bases, 4 Ns and 6 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 61
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 617
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 61
Contig length: 495
Avg. contig coverage: 2.42
Consensus contains:	A: 123	C: 136	G: 93	T: 134	N: 0
			IUPAC: 7	Funny: 0	*: 2

Num reads: 3
Avg. read length: 400
Reads contain 1192 bases, 1 Ns and 7 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 62
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 614
+[1] +++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 62
Contig length: 769
Avg. contig coverage: 2.26
Consensus contains:	A: 227	C: 170	G: 146	T: 210	N: 0
			IUPAC: 8	Funny: 0	*: 8

Num reads: 4
Avg. read length: 436
Reads contain 1734 bases, 0 Ns and 11 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 63
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 610
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 63
Contig length: 564
Avg. contig coverage: 1.93
Consensus contains:	A: 154	C: 112	G: 126	T: 169	N: 0
			IUPAC: 2	Funny: 0	*: 1

Num reads: 2
Avg. read length: 544
Reads contain 1088 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 64
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 608
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 64
Contig length: 530
Avg. contig coverage: 1.93
Consensus contains:	A: 132	C: 126	G: 141	T: 130	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 3
Avg. read length: 341
Reads contain 1024 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 65
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 605
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 65
Contig length: 491
Avg. contig coverage: 1.98
Consensus contains:	A: 143	C: 84	G: 106	T: 154	N: 1
			IUPAC: 2	Funny: 0	*: 1

Num reads: 2
Avg. read length: 488
Reads contain 972 bases, 4 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 66
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 603
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 66
Contig length: 472
Avg. contig coverage: 1.99
Consensus contains:	A: 114	C: 144	G: 84	T: 129	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 470
Reads contain 940 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 67
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 601
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 67
Contig length: 562
Avg. contig coverage: 1.9
Consensus contains:	A: 119	C: 138	G: 142	T: 163	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 536
Reads contain 1069 bases, 2 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 68
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 599
+[1] +a
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 68
Contig length: 560
Avg. contig coverage: 1.74
Consensus contains:	A: 141	C: 111	G: 148	T: 155	N: 0
			IUPAC: 1	Funny: 0	*: 4

Num reads: 2
Avg. read length: 487
Reads contain 970 bases, 0 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 69
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 597
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 69
Contig length: 867
Avg. contig coverage: 1.67
Consensus contains:	A: 235	C: 162	G: 193	T: 274	N: 0
			IUPAC: 2	Funny: 0	*: 1

Num reads: 3
Avg. read length: 482
Reads contain 1445 bases, 1 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 70
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 594
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 70
Contig length: 552
Avg. contig coverage: 1.82
Consensus contains:	A: 167	C: 109	G: 142	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 503
Reads contain 1006 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 71
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 592
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 71
Contig length: 523
Avg. contig coverage: 1.86
Consensus contains:	A: 141	C: 138	G: 115	T: 128	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 486
Reads contain 972 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 72
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 590
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 72
Contig length: 382
Avg. contig coverage: 2.87
Consensus contains:	A: 88	C: 90	G: 90	T: 94	N: 0
			IUPAC: 19	Funny: 0	*: 1

Num reads: 3
Avg. read length: 366
Reads contain 1094 bases, 1 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 73
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 587
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 73
Contig length: 389
Avg. contig coverage: 2.53
Consensus contains:	A: 120	C: 84	G: 93	T: 69	N: 0
			IUPAC: 22	Funny: 0	*: 1

Num reads: 3
Avg. read length: 328
Reads contain 980 bases, 3 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 74
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 584
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 74
Contig length: 469
Avg. contig coverage: 1.94
Consensus contains:	A: 164	C: 124	G: 75	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 456
Reads contain 913 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 75
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 582
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 75
Contig length: 539
Avg. contig coverage: 1.84
Consensus contains:	A: 146	C: 92	G: 133	T: 167	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 496
Reads contain 993 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 76
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 580
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 76
Contig length: 490
Avg. contig coverage: 2
Consensus contains:	A: 116	C: 125	G: 90	T: 158	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 490
Reads contain 979 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 77
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 578
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 77
Contig length: 377
Avg. contig coverage: 2.15
Consensus contains:	A: 62	C: 85	G: 116	T: 114	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 3
Avg. read length: 270
Reads contain 811 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 78
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 575
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 78
Contig length: 504
Avg. contig coverage: 1.85
Consensus contains:	A: 128	C: 126	G: 91	T: 158	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 467
Reads contain 935 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 79
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 573
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 79
Contig length: 494
Avg. contig coverage: 1.95
Consensus contains:	A: 109	C: 118	G: 127	T: 140	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 483
Reads contain 965 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 80
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 571
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 80
Contig length: 465
Avg. contig coverage: 1.92
Consensus contains:	A: 134	C: 90	G: 118	T: 122	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 447
Reads contain 895 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 81
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 569
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 81
Contig length: 372
Avg. contig coverage: 2.36
Consensus contains:	A: 67	C: 84	G: 122	T: 96	N: 0
			IUPAC: 1	Funny: 0	*: 2

Num reads: 3
Avg. read length: 293
Reads contain 877 bases, 0 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 82
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 566
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 82
Contig length: 508
Avg. contig coverage: 1.84
Consensus contains:	A: 159	C: 97	G: 128	T: 123	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 467
Reads contain 935 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 83
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 564
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 83
Contig length: 592
Avg. contig coverage: 1.85
Consensus contains:	A: 142	C: 121	G: 180	T: 145	N: 0
			IUPAC: 3	Funny: 0	*: 1

Num reads: 2
Avg. read length: 550
Reads contain 1100 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 84
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 562
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 84
Contig length: 505
Avg. contig coverage: 1.88
Consensus contains:	A: 139	C: 103	G: 128	T: 135	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 475
Reads contain 950 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 85
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 560
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 85
Contig length: 548
Avg. contig coverage: 1.83
Consensus contains:	A: 149	C: 119	G: 138	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 503
Reads contain 1006 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 86
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 558
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 86
Contig length: 492
Avg. contig coverage: 1.94
Consensus contains:	A: 132	C: 121	G: 95	T: 140	N: 0
			IUPAC: 3	Funny: 0	*: 1

Num reads: 2
Avg. read length: 479
Reads contain 957 bases, 1 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 87
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 556
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 87
Contig length: 541
Avg. contig coverage: 1.8
Consensus contains:	A: 153	C: 126	G: 111	T: 150	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 489
Reads contain 977 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 88
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 554
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 88
Contig length: 468
Avg. contig coverage: 1.87
Consensus contains:	A: 146	C: 92	G: 82	T: 148	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 438
Reads contain 876 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 89
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 552
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 89
Contig length: 611
Avg. contig coverage: 1.68
Consensus contains:	A: 132	C: 203	G: 81	T: 195	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 513
Reads contain 1027 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 90
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 550
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 90
Contig length: 457
Avg. contig coverage: 1.93
Consensus contains:	A: 113	C: 122	G: 105	T: 115	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 2
Avg. read length: 441
Reads contain 883 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 91
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 548
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 91
Contig length: 401
Avg. contig coverage: 2
Consensus contains:	A: 77	C: 125	G: 102	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 401
Reads contain 802 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 92
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 546
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 92
Contig length: 438
Avg. contig coverage: 1.94
Consensus contains:	A: 97	C: 114	G: 124	T: 103	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 425
Reads contain 851 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 93
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 544
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 93
Contig length: 437
Avg. contig coverage: 1.96
Consensus contains:	A: 167	C: 94	G: 75	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 428
Reads contain 857 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 94
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 542
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 94
Contig length: 589
Avg. contig coverage: 1.91
Consensus contains:	A: 143	C: 131	G: 168	T: 132	N: 0
			IUPAC: 13	Funny: 0	*: 2

Num reads: 3
Avg. read length: 375
Reads contain 1115 bases, 7 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 95
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 539
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 95
Contig length: 482
Avg. contig coverage: 1.81
Consensus contains:	A: 128	C: 129	G: 106	T: 119	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 438
Reads contain 876 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 96
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 537
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 96
Contig length: 428
Avg. contig coverage: 1.91
Consensus contains:	A: 124	C: 115	G: 88	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 410
Reads contain 820 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 97
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 535
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 97
Contig length: 519
Avg. contig coverage: 2.23
Consensus contains:	A: 158	C: 82	G: 122	T: 137	N: 0
			IUPAC: 17	Funny: 0	*: 3

Num reads: 3
Avg. read length: 386
Reads contain 1150 bases, 1 Ns and 7 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 98
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 532
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 98
Contig length: 513
Avg. contig coverage: 1.76
Consensus contains:	A: 119	C: 129	G: 132	T: 132	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 453
Reads contain 906 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 99
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 530
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 99
Contig length: 489
Avg. contig coverage: 1.78
Consensus contains:	A: 135	C: 128	G: 85	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 436
Reads contain 872 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 100
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 528
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 100
Contig length: 509
Avg. contig coverage: 1.93
Consensus contains:	A: 125	C: 99	G: 140	T: 143	N: 0
			IUPAC: 0	Funny: 0	*: 2

Num reads: 2
Avg. read length: 493
Reads contain 983 bases, 1 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 101
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 526
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 101
Contig length: 550
Avg. contig coverage: 1.73
Consensus contains:	A: 138	C: 176	G: 114	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 477
Reads contain 955 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 102
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 524
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 102
Contig length: 540
Avg. contig coverage: 1.72
Consensus contains:	A: 124	C: 150	G: 108	T: 158	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 466
Reads contain 932 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 103
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 522
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 103
Contig length: 502
Avg. contig coverage: 1.82
Consensus contains:	A: 123	C: 105	G: 130	T: 143	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 458
Reads contain 916 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 104
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 520
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 104
Contig length: 545
Avg. contig coverage: 1.81
Consensus contains:	A: 150	C: 108	G: 132	T: 144	N: 1
			IUPAC: 10	Funny: 0	*: 0

Num reads: 2
Avg. read length: 493
Reads contain 984 bases, 3 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 105
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 518
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 105
Contig length: 423
Avg. contig coverage: 1.88
Consensus contains:	A: 94	C: 97	G: 117	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 399
Reads contain 798 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 106
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 516
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 106
Contig length: 429
Avg. contig coverage: 1.89
Consensus contains:	A: 139	C: 93	G: 104	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 407
Reads contain 815 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 107
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 514
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 107
Contig length: 397
Avg. contig coverage: 2
Consensus contains:	A: 142	C: 92	G: 64	T: 98	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 397
Reads contain 794 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 108
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 512
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 108
Contig length: 587
Avg. contig coverage: 1.8
Consensus contains:	A: 152	C: 135	G: 113	T: 178	N: 0
			IUPAC: 9	Funny: 0	*: 0

Num reads: 2
Avg. read length: 531
Reads contain 1062 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 109
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 510
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 109
Contig length: 379
Avg. contig coverage: 1.99
Consensus contains:	A: 64	C: 120	G: 99	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 377
Reads contain 754 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 110
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 508
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 110
Contig length: 421
Avg. contig coverage: 1.88
Consensus contains:	A: 114	C: 119	G: 67	T: 120	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 397
Reads contain 793 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 111
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 506
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 111
Contig length: 435
Avg. contig coverage: 1.88
Consensus contains:	A: 125	C: 93	G: 98	T: 119	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 409
Reads contain 819 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 112
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 504
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 112
Contig length: 896
Avg. contig coverage: 1.6
Consensus contains:	A: 247	C: 191	G: 210	T: 238	N: 0
			IUPAC: 8	Funny: 0	*: 2

Num reads: 3
Avg. read length: 480
Reads contain 1435 bases, 1 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 113
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 501
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 113
Contig length: 508
Avg. contig coverage: 1.72
Consensus contains:	A: 159	C: 145	G: 88	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 438
Reads contain 875 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 114
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 499
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 114
Contig length: 517
Avg. contig coverage: 1.98
Consensus contains:	A: 111	C: 135	G: 110	T: 154	N: 0
			IUPAC: 5	Funny: 0	*: 2

Num reads: 2
Avg. read length: 512
Reads contain 1020 bases, 0 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 115
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 497
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 115
Contig length: 576
Avg. contig coverage: 1.65
Consensus contains:	A: 150	C: 108	G: 151	T: 166	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 476
Reads contain 951 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 116
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 495
+[1] +++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 116
Contig length: 525
Avg. contig coverage: 2.57
Consensus contains:	A: 123	C: 130	G: 144	T: 113	N: 0
			IUPAC: 11	Funny: 0	*: 4

Num reads: 4
Avg. read length: 338
Reads contain 1345 bases, 0 Ns and 8 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 117
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 491
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 117
Contig length: 607
Avg. contig coverage: 1.58
Consensus contains:	A: 132	C: 155	G: 162	T: 158	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 480
Reads contain 961 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 118
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 489
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 118
Contig length: 599
Avg. contig coverage: 1.79
Consensus contains:	A: 118	C: 145	G: 173	T: 150	N: 0
			IUPAC: 12	Funny: 0	*: 1

Num reads: 3
Avg. read length: 358
Reads contain 1074 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 119
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 486
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 119
Contig length: 668
Avg. contig coverage: 1.76
Consensus contains:	A: 172	C: 128	G: 156	T: 188	N: 0
			IUPAC: 22	Funny: 0	*: 2

Num reads: 3
Avg. read length: 392
Reads contain 1167 bases, 1 Ns and 8 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 120
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 483
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 120
Contig length: 360
Avg. contig coverage: 1.96
Consensus contains:	A: 67	C: 88	G: 82	T: 121	N: 1
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 354
Reads contain 708 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 121
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 481
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 121
Contig length: 386
Avg. contig coverage: 1.9
Consensus contains:	A: 93	C: 86	G: 119	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 368
Reads contain 735 bases, 1 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 122
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 479
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 122
Contig length: 466
Avg. contig coverage: 1.93
Consensus contains:	A: 131	C: 105	G: 119	T: 109	N: 0
			IUPAC: 1	Funny: 0	*: 1

Num reads: 2
Avg. read length: 452
Reads contain 900 bases, 1 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 123
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 477
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 123
Contig length: 471
Avg. contig coverage: 1.71
Consensus contains:	A: 159	C: 122	G: 56	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 404
Reads contain 809 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 124
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 475
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 124
Contig length: 337
Avg. contig coverage: 2
Consensus contains:	A: 78	C: 83	G: 68	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 337
Reads contain 674 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 125
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 473
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 125
Contig length: 418
Avg. contig coverage: 1.89
Consensus contains:	A: 123	C: 95	G: 108	T: 90	N: 0
			IUPAC: 1	Funny: 0	*: 1

Num reads: 2
Avg. read length: 397
Reads contain 791 bases, 1 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 126
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 471
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 126
Contig length: 571
Avg. contig coverage: 1.61
Consensus contains:	A: 161	C: 143	G: 101	T: 165	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 462
Reads contain 921 bases, 1 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 127
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 469
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 127
Contig length: 471
Avg. contig coverage: 1.81
Consensus contains:	A: 120	C: 110	G: 111	T: 130	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 428
Reads contain 855 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 128
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 467
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 128
Contig length: 351
Avg. contig coverage: 1.96
Consensus contains:	A: 111	C: 86	G: 45	T: 109	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 344
Reads contain 689 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 129
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 465
+[1] +a
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 129
Contig length: 659
Avg. contig coverage: 1.37
Consensus contains:	A: 182	C: 186	G: 122	T: 164	N: 0
			IUPAC: 5	Funny: 0	*: 0

Num reads: 2
Avg. read length: 453
Reads contain 905 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 130
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 463
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 130
Contig length: 368
Avg. contig coverage: 1.97
Consensus contains:	A: 90	C: 54	G: 86	T: 137	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 364
Reads contain 725 bases, 2 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 131
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 461
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 131
Contig length: 670
Avg. contig coverage: 1.82
Consensus contains:	A: 195	C: 130	G: 164	T: 157	N: 0
			IUPAC: 22	Funny: 0	*: 2

Num reads: 3
Avg. read length: 408
Reads contain 1220 bases, 0 Ns and 6 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 132
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 458
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 132
Contig length: 592
Avg. contig coverage: 1.58
Consensus contains:	A: 146	C: 96	G: 166	T: 183	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 468
Reads contain 937 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 133
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 456
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 133
Contig length: 324
Avg. contig coverage: 2
Consensus contains:	A: 119	C: 74	G: 48	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 324
Reads contain 648 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 134
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 454
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 134
Contig length: 334
Avg. contig coverage: 1.99
Consensus contains:	A: 106	C: 87	G: 60	T: 80	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 333
Reads contain 665 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 135
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 452
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 135
Contig length: 338
Avg. contig coverage: 1.98
Consensus contains:	A: 87	C: 83	G: 79	T: 88	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 335
Reads contain 670 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 136
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 450
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 136
Contig length: 456
Avg. contig coverage: 1.94
Consensus contains:	A: 118	C: 87	G: 104	T: 143	N: 0
			IUPAC: 1	Funny: 0	*: 3

Num reads: 2
Avg. read length: 443
Reads contain 880 bases, 3 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 137
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 448
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 137
Contig length: 356
Avg. contig coverage: 1.89
Consensus contains:	A: 87	C: 77	G: 124	T: 68	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 337
Reads contain 675 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 138
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 446
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 138
Contig length: 624
Avg. contig coverage: 1.53
Consensus contains:	A: 133	C: 152	G: 132	T: 206	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 479
Reads contain 959 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 139
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 444
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 139
Contig length: 395
Avg. contig coverage: 1.93
Consensus contains:	A: 105	C: 99	G: 97	T: 93	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 382
Reads contain 765 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 140
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 442
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 140
Contig length: 418
Avg. contig coverage: 1.82
Consensus contains:	A: 109	C: 95	G: 91	T: 119	N: 0
			IUPAC: 4	Funny: 0	*: 0

Num reads: 2
Avg. read length: 381
Reads contain 763 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 141
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 440
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 141
Contig length: 524
Avg. contig coverage: 1.79
Consensus contains:	A: 117	C: 148	G: 122	T: 126	N: 0
			IUPAC: 10	Funny: 0	*: 1

Num reads: 2
Avg. read length: 470
Reads contain 938 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 142
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 438
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 142
Contig length: 547
Avg. contig coverage: 1.57
Consensus contains:	A: 150	C: 145	G: 104	T: 148	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 430
Reads contain 860 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 143
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 436
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 143
Contig length: 384
Avg. contig coverage: 1.94
Consensus contains:	A: 118	C: 54	G: 74	T: 137	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 374
Reads contain 747 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 144
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 434
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 144
Contig length: 334
Avg. contig coverage: 1.99
Consensus contains:	A: 145	C: 47	G: 69	T: 73	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 333
Reads contain 666 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 145
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 432
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 145
Contig length: 655
Avg. contig coverage: 1.5
Consensus contains:	A: 216	C: 144	G: 124	T: 170	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 493
Reads contain 983 bases, 1 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 146
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 430
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 146
Contig length: 521
Avg. contig coverage: 1.81
Consensus contains:	A: 128	C: 123	G: 134	T: 132	N: 0
			IUPAC: 2	Funny: 0	*: 2

Num reads: 3
Avg. read length: 316
Reads contain 944 bases, 0 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 147
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 427
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 147
Contig length: 392
Avg. contig coverage: 1.98
Consensus contains:	A: 118	C: 65	G: 87	T: 121	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 389
Reads contain 775 bases, 1 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 148
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 425
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 148
Contig length: 307
Avg. contig coverage: 2
Consensus contains:	A: 68	C: 90	G: 62	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 307
Reads contain 614 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 149
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 423
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 149
Contig length: 577
Avg. contig coverage: 1.7
Consensus contains:	A: 158	C: 116	G: 140	T: 163	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 492
Reads contain 984 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 150
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 421
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 150
Contig length: 668
Avg. contig coverage: 1.66
Consensus contains:	A: 169	C: 167	G: 145	T: 183	N: 0
			IUPAC: 2	Funny: 0	*: 2

Num reads: 2
Avg. read length: 556
Reads contain 1107 bases, 0 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 151
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 419
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 151
Contig length: 636
Avg. contig coverage: 1.58
Consensus contains:	A: 179	C: 157	G: 106	T: 188	N: 0
			IUPAC: 5	Funny: 0	*: 1

Num reads: 2
Avg. read length: 503
Reads contain 1006 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 152
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 417
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 152
Contig length: 443
Avg. contig coverage: 1.76
Consensus contains:	A: 121	C: 115	G: 100	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 390
Reads contain 779 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 153
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 415
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 153
Contig length: 530
Avg. contig coverage: 1.59
Consensus contains:	A: 161	C: 119	G: 103	T: 146	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 422
Reads contain 843 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 154
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 413
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 154
Contig length: 444
Avg. contig coverage: 1.9
Consensus contains:	A: 153	C: 101	G: 73	T: 114	N: 0
			IUPAC: 2	Funny: 0	*: 1

Num reads: 2
Avg. read length: 424
Reads contain 845 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 155
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 411
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 155
Contig length: 423
Avg. contig coverage: 1.76
Consensus contains:	A: 135	C: 96	G: 102	T: 88	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 2
Avg. read length: 372
Reads contain 744 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 156
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 409
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 156
Contig length: 520
Avg. contig coverage: 2.1
Consensus contains:	A: 104	C: 113	G: 122	T: 149	N: 0
			IUPAC: 27	Funny: 0	*: 5

Num reads: 3
Avg. read length: 365
Reads contain 1086 bases, 0 Ns and 9 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 157
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 406
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 157
Contig length: 596
Avg. contig coverage: 1.6
Consensus contains:	A: 160	C: 155	G: 108	T: 170	N: 0
			IUPAC: 2	Funny: 0	*: 1

Num reads: 2
Avg. read length: 479
Reads contain 957 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 158
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 404
+[1] +a
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 158
Contig length: 427
Avg. contig coverage: 1.97
Consensus contains:	A: 128	C: 108	G: 75	T: 110	N: 0
			IUPAC: 4	Funny: 0	*: 2

Num reads: 2
Avg. read length: 421
Reads contain 831 bases, 4 Ns and 7 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 159
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 402
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 159
Contig length: 441
Avg. contig coverage: 1.71
Consensus contains:	A: 108	C: 77	G: 132	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 379
Reads contain 758 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 160
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 400
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 160
Contig length: 395
Avg. contig coverage: 2.47
Consensus contains:	A: 124	C: 110	G: 41	T: 115	N: 1
			IUPAC: 0	Funny: 0	*: 4

Num reads: 3
Avg. read length: 326
Reads contain 969 bases, 1 Ns and 8 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 161
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 397
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 161
Contig length: 330
Avg. contig coverage: 2
Consensus contains:	A: 82	C: 65	G: 103	T: 78	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 2
Avg. read length: 330
Reads contain 659 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 162
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 395
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 162
Contig length: 362
Avg. contig coverage: 1.8
Consensus contains:	A: 117	C: 99	G: 48	T: 97	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 327
Reads contain 654 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 163
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 393
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 163
Contig length: 480
Avg. contig coverage: 1.62
Consensus contains:	A: 119	C: 108	G: 111	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 389
Reads contain 778 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 164
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 391
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 164
Contig length: 395
Avg. contig coverage: 1.77
Consensus contains:	A: 117	C: 103	G: 76	T: 96	N: 1
			IUPAC: 1	Funny: 0	*: 1

Num reads: 2
Avg. read length: 351
Reads contain 699 bases, 1 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 165
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 389
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 165
Contig length: 353
Avg. contig coverage: 1.86
Consensus contains:	A: 91	C: 66	G: 94	T: 98	N: 0
			IUPAC: 3	Funny: 0	*: 1

Num reads: 2
Avg. read length: 329
Reads contain 657 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 166
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 387
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 166
Contig length: 524
Avg. contig coverage: 1.58
Consensus contains:	A: 116	C: 84	G: 179	T: 143	N: 1
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 415
Reads contain 827 bases, 2 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 167
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 385
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 167
Contig length: 368
Avg. contig coverage: 1.85
Consensus contains:	A: 84	C: 89	G: 84	T: 110	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 340
Reads contain 679 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 168
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 383
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 168
Contig length: 421
Avg. contig coverage: 1.65
Consensus contains:	A: 112	C: 119	G: 82	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 348
Reads contain 697 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 169
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 381
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 169
Contig length: 399
Avg. contig coverage: 1.97
Consensus contains:	A: 89	C: 83	G: 112	T: 110	N: 1
			IUPAC: 0	Funny: 0	*: 4

Num reads: 2
Avg. read length: 394
Reads contain 780 bases, 1 Ns and 8 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 170
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 379
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 170
Contig length: 301
Avg. contig coverage: 2
Consensus contains:	A: 91	C: 68	G: 52	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 301
Reads contain 601 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 171
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 377
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 171
Contig length: 596
Avg. contig coverage: 1.64
Consensus contains:	A: 101	C: 206	G: 160	T: 119	N: 0
			IUPAC: 10	Funny: 0	*: 0

Num reads: 2
Avg. read length: 490
Reads contain 979 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 172
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 375
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 172
Contig length: 439
Avg. contig coverage: 1.83
Consensus contains:	A: 123	C: 131	G: 77	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 403
Reads contain 806 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 173
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 373
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 173
Contig length: 402
Avg. contig coverage: 1.85
Consensus contains:	A: 102	C: 76	G: 91	T: 133	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 372
Reads contain 745 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 174
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 371
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 174
Contig length: 275
Avg. contig coverage: 2
Consensus contains:	A: 81	C: 53	G: 77	T: 64	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 275
Reads contain 550 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 175
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 369
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 175
Contig length: 386
Avg. contig coverage: 1.9
Consensus contains:	A: 102	C: 106	G: 84	T: 90	N: 0
			IUPAC: 2	Funny: 0	*: 2

Num reads: 2
Avg. read length: 367
Reads contain 731 bases, 0 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 176
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 367
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 176
Contig length: 595
Avg. contig coverage: 1.76
Consensus contains:	A: 158	C: 155	G: 111	T: 155	N: 0
			IUPAC: 15	Funny: 0	*: 1

Num reads: 2
Avg. read length: 525
Reads contain 1048 bases, 2 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 177
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 365
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 177
Contig length: 402
Avg. contig coverage: 1.7
Consensus contains:	A: 93	C: 81	G: 97	T: 129	N: 1
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 342
Reads contain 682 bases, 1 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 178
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 363
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 178
Contig length: 751
Avg. contig coverage: 1.34
Consensus contains:	A: 203	C: 147	G: 179	T: 222	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 503
Reads contain 1007 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 179
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 361
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 179
Contig length: 402
Avg. contig coverage: 1.96
Consensus contains:	A: 94	C: 98	G: 80	T: 126	N: 0
			IUPAC: 4	Funny: 0	*: 0

Num reads: 2
Avg. read length: 395
Reads contain 790 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 180
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 359
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 180
Contig length: 418
Avg. contig coverage: 1.96
Consensus contains:	A: 90	C: 74	G: 143	T: 106	N: 0
			IUPAC: 4	Funny: 0	*: 1

Num reads: 2
Avg. read length: 411
Reads contain 819 bases, 1 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 181
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 357
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 181
Contig length: 422
Avg. contig coverage: 1.67
Consensus contains:	A: 132	C: 134	G: 55	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 352
Reads contain 704 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 182
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 355
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 182
Contig length: 664
Avg. contig coverage: 1.46
Consensus contains:	A: 181	C: 179	G: 141	T: 161	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 2
Avg. read length: 487
Reads contain 975 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 183
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 353
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 183
Contig length: 502
Avg. contig coverage: 1.57
Consensus contains:	A: 132	C: 115	G: 95	T: 157	N: 0
			IUPAC: 1	Funny: 0	*: 2

Num reads: 2
Avg. read length: 395
Reads contain 789 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 184
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 351
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 184
Contig length: 438
Avg. contig coverage: 1.59
Consensus contains:	A: 123	C: 127	G: 92	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 349
Reads contain 698 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 185
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 349
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 185
Contig length: 676
Avg. contig coverage: 1.86
Consensus contains:	A: 172	C: 152	G: 159	T: 170	N: 0
			IUPAC: 20	Funny: 0	*: 3

Num reads: 2
Avg. read length: 632
Reads contain 1247 bases, 7 Ns and 10 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 186
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 347
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 186
Contig length: 544
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 112	G: 158	T: 133	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 544
Reads contain 544 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 187
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 346
+[1] +r
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 187
Contig length: 379
Avg. contig coverage: 1.81
Consensus contains:	A: 96	C: 72	G: 102	T: 98	N: 0
			IUPAC: 9	Funny: 0	*: 2

Num reads: 2
Avg. read length: 344
Reads contain 684 bases, 1 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 188
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 344
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 188
Contig length: 544
Avg. contig coverage: 1.53
Consensus contains:	A: 179	C: 125	G: 100	T: 139	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 418
Reads contain 836 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 189
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 342
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 189
Contig length: 462
Avg. contig coverage: 1.53
Consensus contains:	A: 124	C: 114	G: 102	T: 120	N: 1
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 355
Reads contain 709 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 190
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 340
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 190
Contig length: 503
Avg. contig coverage: 1.9
Consensus contains:	A: 138	C: 144	G: 98	T: 119	N: 0
			IUPAC: 1	Funny: 0	*: 3

Num reads: 2
Avg. read length: 478
Reads contain 953 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 191
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 338
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 191
Contig length: 511
Avg. contig coverage: 1.49
Consensus contains:	A: 132	C: 128	G: 108	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 383
Reads contain 765 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 192
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 336
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 192
Contig length: 450
Avg. contig coverage: 1.56
Consensus contains:	A: 128	C: 119	G: 98	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 352
Reads contain 704 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 193
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 334
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 193
Contig length: 550
Avg. contig coverage: 1.43
Consensus contains:	A: 204	C: 138	G: 81	T: 125	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 395
Reads contain 788 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 194
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 332
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 194
Contig length: 380
Avg. contig coverage: 1.66
Consensus contains:	A: 103	C: 92	G: 81	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 316
Reads contain 632 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 195
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 330
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 195
Contig length: 467
Avg. contig coverage: 2.01
Consensus contains:	A: 110	C: 123	G: 94	T: 114	N: 0
			IUPAC: 25	Funny: 0	*: 1

Num reads: 3
Avg. read length: 314
Reads contain 939 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 196
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 327
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 196
Contig length: 505
Avg. contig coverage: 1.82
Consensus contains:	A: 165	C: 91	G: 91	T: 157	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 460
Reads contain 919 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 197
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 325
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 197
Contig length: 605
Avg. contig coverage: 1.56
Consensus contains:	A: 185	C: 132	G: 117	T: 167	N: 0
			IUPAC: 3	Funny: 0	*: 1

Num reads: 3
Avg. read length: 315
Reads contain 941 bases, 0 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 198
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 322
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 198
Contig length: 602
Avg. contig coverage: 1.63
Consensus contains:	A: 158	C: 147	G: 123	T: 164	N: 1
			IUPAC: 6	Funny: 0	*: 3

Num reads: 2
Avg. read length: 492
Reads contain 981 bases, 1 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 199
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 320
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 199
Contig length: 476
Avg. contig coverage: 1.85
Consensus contains:	A: 111	C: 119	G: 113	T: 129	N: 0
			IUPAC: 2	Funny: 0	*: 2

Num reads: 2
Avg. read length: 442
Reads contain 881 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 200
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 318
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 200
Contig length: 315
Avg. contig coverage: 1.86
Consensus contains:	A: 74	C: 79	G: 94	T: 66	N: 0
			IUPAC: 0	Funny: 0	*: 2

Num reads: 2
Avg. read length: 294
Reads contain 585 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 201
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 316
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 201
Contig length: 475
Avg. contig coverage: 1.76
Consensus contains:	A: 125	C: 101	G: 140	T: 106	N: 0
			IUPAC: 3	Funny: 0	*: 0

Num reads: 2
Avg. read length: 419
Reads contain 836 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 202
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 314
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 202
Contig length: 612
Avg. contig coverage: 1.37
Consensus contains:	A: 154	C: 168	G: 130	T: 160	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 3
Avg. read length: 281
Reads contain 844 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 203
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 311
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 203
Contig length: 619
Avg. contig coverage: 1.62
Consensus contains:	A: 146	C: 142	G: 161	T: 155	N: 0
			IUPAC: 15	Funny: 0	*: 0

Num reads: 2
Avg. read length: 504
Reads contain 1007 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 204
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 309
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 204
Contig length: 538
Avg. contig coverage: 1.77
Consensus contains:	A: 153	C: 112	G: 132	T: 120	N: 0
			IUPAC: 18	Funny: 0	*: 3

Num reads: 2
Avg. read length: 477
Reads contain 949 bases, 0 Ns and 6 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 205
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 307
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 205
Contig length: 491
Avg. contig coverage: 1.51
Consensus contains:	A: 135	C: 144	G: 108	T: 98	N: 3
			IUPAC: 1	Funny: 0	*: 2

Num reads: 2
Avg. read length: 371
Reads contain 737 bases, 4 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 206
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 305
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 206
Contig length: 847
Avg. contig coverage: 1.39
Consensus contains:	A: 225	C: 187	G: 178	T: 244	N: 0
			IUPAC: 11	Funny: 0	*: 2

Num reads: 3
Avg. read length: 393
Reads contain 1174 bases, 2 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 207
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 302
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 207
Contig length: 536
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 125	G: 125	T: 160	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 536
Reads contain 534 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 208
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 301
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 208
Contig length: 842
Avg. contig coverage: 1.27
Consensus contains:	A: 260	C: 172	G: 170	T: 240	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 537
Reads contain 1074 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 209
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 299
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 209
Contig length: 385
Avg. contig coverage: 1.74
Consensus contains:	A: 114	C: 103	G: 76	T: 90	N: 0
			IUPAC: 1	Funny: 0	*: 1

Num reads: 2
Avg. read length: 336
Reads contain 671 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 210
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 297
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 210
Contig length: 275
Avg. contig coverage: 1.83
Consensus contains:	A: 101	C: 60	G: 57	T: 56	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 252
Reads contain 504 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 211
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 295
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 211
Contig length: 354
Avg. contig coverage: 1.62
Consensus contains:	A: 91	C: 69	G: 85	T: 109	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 287
Reads contain 574 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 212
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 293
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 212
Contig length: 522
Avg. contig coverage: 1.41
Consensus contains:	A: 141	C: 106	G: 120	T: 155	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 370
Reads contain 741 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 213
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 291
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 213
Contig length: 523
Avg. contig coverage: 1.97
Consensus contains:	A: 157	C: 61	G: 124	T: 166	N: 0
			IUPAC: 11	Funny: 0	*: 4

Num reads: 2
Avg. read length: 517
Reads contain 1026 bases, 0 Ns and 8 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 214
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 289
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 214
Contig length: 393
Avg. contig coverage: 1.57
Consensus contains:	A: 113	C: 103	G: 82	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 2

Num reads: 2
Avg. read length: 309
Reads contain 617 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 215
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 287
+[1] +++++rr
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 215
Contig length: 626
Avg. contig coverage: 2.96
Consensus contains:	A: 138	C: 166	G: 160	T: 137	N: 0
			IUPAC: 21	Funny: 0	*: 4

Num reads: 6
Avg. read length: 309
Reads contain 1836 bases, 0 Ns and 18 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 216
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 281
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 216
Contig length: 299
Avg. contig coverage: 1.69
Consensus contains:	A: 102	C: 82	G: 36	T: 78	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 254
Reads contain 507 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 217
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 279
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 217
Contig length: 443
Avg. contig coverage: 1.73
Consensus contains:	A: 131	C: 111	G: 89	T: 110	N: 0
			IUPAC: 0	Funny: 0	*: 2

Num reads: 2
Avg. read length: 384
Reads contain 766 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 218
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 277
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 218
Contig length: 731
Avg. contig coverage: 1.36
Consensus contains:	A: 186	C: 164	G: 176	T: 200	N: 0
			IUPAC: 3	Funny: 0	*: 2

Num reads: 2
Avg. read length: 500
Reads contain 996 bases, 0 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 219
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 275
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 219
Contig length: 373
Avg. contig coverage: 1.53
Consensus contains:	A: 150	C: 86	G: 37	T: 100	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 286
Reads contain 573 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 220
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 273
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 220
Contig length: 461
Avg. contig coverage: 1.93
Consensus contains:	A: 145	C: 93	G: 102	T: 103	N: 0
			IUPAC: 14	Funny: 0	*: 4

Num reads: 2
Avg. read length: 446
Reads contain 888 bases, 0 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 221
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 271
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 221
Contig length: 486
Avg. contig coverage: 1.42
Consensus contains:	A: 146	C: 91	G: 129	T: 116	N: 3
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 346
Reads contain 690 bases, 3 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 222
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 269
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 222
Contig length: 448
Avg. contig coverage: 1.42
Consensus contains:	A: 136	C: 82	G: 77	T: 153	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 318
Reads contain 637 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 223
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 267
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 223
Contig length: 422
Avg. contig coverage: 1.63
Consensus contains:	A: 101	C: 104	G: 98	T: 107	N: 0
			IUPAC: 12	Funny: 0	*: 0

Num reads: 2
Avg. read length: 345
Reads contain 690 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 224
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 265
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 224
Contig length: 431
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 86	G: 123	T: 121	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 431
Reads contain 431 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 225
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 264
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 225
Contig length: 518
Avg. contig coverage: 1.81
Consensus contains:	A: 164	C: 86	G: 131	T: 118	N: 0
			IUPAC: 15	Funny: 0	*: 4

Num reads: 2
Avg. read length: 470
Reads contain 934 bases, 0 Ns and 6 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 226
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 262
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 226
Contig length: 281
Avg. contig coverage: 1.96
Consensus contains:	A: 70	C: 58	G: 79	T: 70	N: 0
			IUPAC: 3	Funny: 0	*: 1

Num reads: 2
Avg. read length: 276
Reads contain 551 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 227
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 260
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 227
Contig length: 451
Avg. contig coverage: 1.64
Consensus contains:	A: 122	C: 115	G: 111	T: 100	N: 0
			IUPAC: 2	Funny: 0	*: 1

Num reads: 2
Avg. read length: 370
Reads contain 740 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 228
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 258
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 228
Contig length: 390
Avg. contig coverage: 1.49
Consensus contains:	A: 76	C: 106	G: 109	T: 97	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 2
Avg. read length: 291
Reads contain 582 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 229
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 256
+[1] +a
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 229
Contig length: 434
Avg. contig coverage: 1.35
Consensus contains:	A: 108	C: 97	G: 128	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 295
Reads contain 590 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 230
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 254
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 230
Contig length: 496
Avg. contig coverage: 1.43
Consensus contains:	A: 158	C: 121	G: 106	T: 109	N: 0
			IUPAC: 0	Funny: 0	*: 2

Num reads: 2
Avg. read length: 356
Reads contain 709 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 231
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 252
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 231
Contig length: 507
Avg. contig coverage: 1.42
Consensus contains:	A: 149	C: 119	G: 102	T: 132	N: 0
			IUPAC: 3	Funny: 0	*: 2

Num reads: 2
Avg. read length: 360
Reads contain 716 bases, 2 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 232
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 250
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 232
Contig length: 576
Avg. contig coverage: 1.47
Consensus contains:	A: 153	C: 167	G: 121	T: 122	N: 0
			IUPAC: 9	Funny: 0	*: 4

Num reads: 2
Avg. read length: 425
Reads contain 846 bases, 1 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 233
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 248
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 233
Contig length: 303
Avg. contig coverage: 1.98
Consensus contains:	A: 85	C: 37	G: 105	T: 74	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 2
Avg. read length: 300
Reads contain 597 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 234
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 246
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 234
Contig length: 486
Avg. contig coverage: 1.61
Consensus contains:	A: 117	C: 133	G: 105	T: 122	N: 0
			IUPAC: 3	Funny: 0	*: 6

Num reads: 2
Avg. read length: 392
Reads contain 778 bases, 0 Ns and 7 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 235
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 244
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 235
Contig length: 816
Avg. contig coverage: 1.33
Consensus contains:	A: 195	C: 189	G: 234	T: 192	N: 0
			IUPAC: 2	Funny: 0	*: 4

Num reads: 2
Avg. read length: 545
Reads contain 1086 bases, 0 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 236
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 242
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 236
Contig length: 474
Avg. contig coverage: 1.8
Consensus contains:	A: 98	C: 96	G: 152	T: 119	N: 0
			IUPAC: 9	Funny: 0	*: 0

Num reads: 2
Avg. read length: 428
Reads contain 852 bases, 0 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 237
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 240
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 237
Contig length: 764
Avg. contig coverage: 1.21
Consensus contains:	A: 209	C: 158	G: 184	T: 213	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 465
Reads contain 931 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 238
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 238
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 238
Contig length: 519
Avg. contig coverage: 1.31
Consensus contains:	A: 125	C: 133	G: 131	T: 130	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 342
Reads contain 685 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 239
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 236
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 239
Contig length: 479
Avg. contig coverage: 1.46
Consensus contains:	A: 94	C: 91	G: 142	T: 149	N: 0
			IUPAC: 3	Funny: 0	*: 0

Num reads: 2
Avg. read length: 352
Reads contain 703 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 240
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 234
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 240
Contig length: 708
Avg. contig coverage: 1.24
Consensus contains:	A: 167	C: 119	G: 211	T: 211	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 439
Reads contain 879 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 241
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 232
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 241
Contig length: 454
Avg. contig coverage: 1.42
Consensus contains:	A: 131	C: 126	G: 93	T: 102	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 2
Avg. read length: 323
Reads contain 647 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 242
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 230
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 242
Contig length: 238
Avg. contig coverage: 1.88
Consensus contains:	A: 69	C: 80	G: 38	T: 51	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 224
Reads contain 449 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 243
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 228
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 243
Contig length: 375
Avg. contig coverage: 1.48
Consensus contains:	A: 102	C: 74	G: 91	T: 106	N: 0
			IUPAC: 1	Funny: 0	*: 1

Num reads: 2
Avg. read length: 277
Reads contain 554 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 244
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 226
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 244
Contig length: 412
Avg. contig coverage: 1.51
Consensus contains:	A: 97	C: 85	G: 117	T: 111	N: 0
			IUPAC: 1	Funny: 0	*: 1

Num reads: 2
Avg. read length: 312
Reads contain 622 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 245
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 224
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 245
Contig length: 561
Avg. contig coverage: 1.31
Consensus contains:	A: 175	C: 132	G: 90	T: 164	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 367
Reads contain 735 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 246
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 222
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 246
Contig length: 223
Avg. contig coverage: 1.73
Consensus contains:	A: 56	C: 35	G: 73	T: 58	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 193
Reads contain 386 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 247
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 220
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 247
Contig length: 275
Avg. contig coverage: 1.78
Consensus contains:	A: 76	C: 63	G: 53	T: 80	N: 0
			IUPAC: 1	Funny: 0	*: 2

Num reads: 2
Avg. read length: 245
Reads contain 489 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 248
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 218
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 248
Contig length: 429
Avg. contig coverage: 1.36
Consensus contains:	A: 145	C: 89	G: 74	T: 121	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 292
Reads contain 585 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 249
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 216
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 249
Contig length: 473
Avg. contig coverage: 1.51
Consensus contains:	A: 115	C: 117	G: 115	T: 120	N: 0
			IUPAC: 3	Funny: 0	*: 3

Num reads: 2
Avg. read length: 357
Reads contain 712 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 250
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 214
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 250
Contig length: 379
Avg. contig coverage: 1.92
Consensus contains:	A: 94	C: 88	G: 89	T: 94	N: 0
			IUPAC: 12	Funny: 0	*: 2

Num reads: 2
Avg. read length: 365
Reads contain 723 bases, 1 Ns and 6 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 251
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 212
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 251
Contig length: 531
Avg. contig coverage: 1.4
Consensus contains:	A: 142	C: 103	G: 106	T: 173	N: 0
			IUPAC: 6	Funny: 0	*: 1

Num reads: 2
Avg. read length: 373
Reads contain 745 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 252
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 210
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 252
Contig length: 539
Avg. contig coverage: 1.31
Consensus contains:	A: 131	C: 157	G: 138	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 355
Reads contain 710 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 253
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 208
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 253
Contig length: 448
Avg. contig coverage: 1.51
Consensus contains:	A: 118	C: 84	G: 110	T: 121	N: 0
			IUPAC: 14	Funny: 0	*: 1

Num reads: 2
Avg. read length: 339
Reads contain 678 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 254
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 206
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 254
Contig length: 510
Avg. contig coverage: 1.53
Consensus contains:	A: 158	C: 97	G: 115	T: 138	N: 1
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 391
Reads contain 782 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 255
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 204
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 255
Contig length: 396
Avg. contig coverage: 1.42
Consensus contains:	A: 87	C: 84	G: 123	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 283
Reads contain 566 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 256
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 202
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 256
Contig length: 305
Avg. contig coverage: 1.49
Consensus contains:	A: 91	C: 95	G: 54	T: 64	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 227
Reads contain 454 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 257
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 200
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 257
Contig length: 254
Avg. contig coverage: 1.56
Consensus contains:	A: 49	C: 42	G: 83	T: 80	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 198
Reads contain 397 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 258
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 198
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 258
Contig length: 269
Avg. contig coverage: 1.78
Consensus contains:	A: 103	C: 59	G: 47	T: 59	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 240
Reads contain 479 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 259
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 196
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 259
Contig length: 417
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 100	G: 117	T: 95	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 417
Reads contain 417 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 260
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 195
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 260
Contig length: 509
Avg. contig coverage: 1.3
Consensus contains:	A: 139	C: 114	G: 119	T: 136	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 333
Reads contain 666 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 261
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 193
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 261
Contig length: 313
Avg. contig coverage: 1.47
Consensus contains:	A: 111	C: 56	G: 66	T: 80	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 231
Reads contain 463 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 262
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 191
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 262
Contig length: 344
Avg. contig coverage: 1.54
Consensus contains:	A: 106	C: 83	G: 74	T: 80	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 266
Reads contain 531 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 263
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 189
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 263
Contig length: 319
Avg. contig coverage: 1.66
Consensus contains:	A: 115	C: 64	G: 55	T: 72	N: 0
			IUPAC: 13	Funny: 0	*: 0

Num reads: 2
Avg. read length: 266
Reads contain 532 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 264
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 187
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 264
Contig length: 850
Avg. contig coverage: 1.19
Consensus contains:	A: 230	C: 153	G: 219	T: 248	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 509
Reads contain 1017 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 265
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 185
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 265
Contig length: 400
Avg. contig coverage: 1.6
Consensus contains:	A: 108	C: 91	G: 116	T: 79	N: 0
			IUPAC: 6	Funny: 0	*: 0

Num reads: 3
Avg. read length: 214
Reads contain 643 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 266
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 182
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 266
Contig length: 460
Avg. contig coverage: 1.4
Consensus contains:	A: 107	C: 91	G: 139	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 323
Reads contain 647 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 267
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 180
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 267
Contig length: 88
Avg. contig coverage: 1
Consensus contains:	A: 19	C: 27	G: 23	T: 19	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 88
Reads contain 88 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 268
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 179
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 268
Contig length: 433
Avg. contig coverage: 1.66
Consensus contains:	A: 113	C: 56	G: 115	T: 134	N: 0
			IUPAC: 5	Funny: 0	*: 10

Num reads: 2
Avg. read length: 360
Reads contain 708 bases, 2 Ns and 10 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 269
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 177
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 269
Contig length: 560
Avg. contig coverage: 1.4
Consensus contains:	A: 181	C: 135	G: 112	T: 119	N: 1
			IUPAC: 11	Funny: 0	*: 1

Num reads: 2
Avg. read length: 392
Reads contain 780 bases, 1 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 270
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 175
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 270
Contig length: 334
Avg. contig coverage: 1.45
Consensus contains:	A: 77	C: 49	G: 120	T: 87	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 243
Reads contain 486 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 271
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 173
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 271
Contig length: 213
Avg. contig coverage: 1.55
Consensus contains:	A: 59	C: 98	G: 24	T: 32	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 165
Reads contain 331 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 272
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 171
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 272
Contig length: 328
Avg. contig coverage: 1.34
Consensus contains:	A: 97	C: 74	G: 67	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 221
Reads contain 442 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 273
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 169
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 273
Contig length: 393
Avg. contig coverage: 1.26
Consensus contains:	A: 132	C: 88	G: 71	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 249
Reads contain 498 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 274
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 167
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 274
Contig length: 274
Avg. contig coverage: 1.5
Consensus contains:	A: 38	C: 90	G: 69	T: 75	N: 0
			IUPAC: 0	Funny: 0	*: 2

Num reads: 2
Avg. read length: 206
Reads contain 410 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 275
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 165
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 275
Contig length: 541
Avg. contig coverage: 1.36
Consensus contains:	A: 131	C: 121	G: 142	T: 140	N: 0
			IUPAC: 4	Funny: 0	*: 3

Num reads: 2
Avg. read length: 370
Reads contain 737 bases, 0 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 276
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 163
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 276
Contig length: 700
Avg. contig coverage: 1.14
Consensus contains:	A: 202	C: 170	G: 117	T: 211	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 400
Reads contain 800 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 277
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 161
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 277
Contig length: 985
Avg. contig coverage: 1.11
Consensus contains:	A: 252	C: 249	G: 248	T: 236	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 551
Reads contain 1101 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 278
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 159
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 278
Contig length: 695
Avg. contig coverage: 1.22
Consensus contains:	A: 158	C: 164	G: 170	T: 201	N: 0
			IUPAC: 1	Funny: 0	*: 1

Num reads: 2
Avg. read length: 424
Reads contain 846 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 279
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 157
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 279
Contig length: 199
Avg. contig coverage: 1.87
Consensus contains:	A: 46	C: 50	G: 52	T: 49	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 2
Avg. read length: 186
Reads contain 373 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 280
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 155
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 280
Contig length: 442
Avg. contig coverage: 1.26
Consensus contains:	A: 125	C: 62	G: 86	T: 169	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 278
Reads contain 557 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 281
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 153
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 281
Contig length: 446
Avg. contig coverage: 1.21
Consensus contains:	A: 114	C: 100	G: 123	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 272
Reads contain 542 bases, 1 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 282
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 151
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 282
Contig length: 625
Avg. contig coverage: 1.3
Consensus contains:	A: 167	C: 156	G: 126	T: 166	N: 1
			IUPAC: 9	Funny: 0	*: 0

Num reads: 2
Avg. read length: 408
Reads contain 816 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 283
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 149
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 283
Contig length: 354
Avg. contig coverage: 1.37
Consensus contains:	A: 119	C: 67	G: 70	T: 94	N: 0
			IUPAC: 3	Funny: 0	*: 1

Num reads: 2
Avg. read length: 243
Reads contain 484 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 284
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 147
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 284
Contig length: 446
Avg. contig coverage: 1
Consensus contains:	A: 182	C: 94	G: 57	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 446
Reads contain 446 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 285
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 146
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 285
Contig length: 623
Avg. contig coverage: 1.13
Consensus contains:	A: 208	C: 147	G: 134	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 353
Reads contain 707 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 286
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 144
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 286
Contig length: 312
Avg. contig coverage: 1.44
Consensus contains:	A: 83	C: 90	G: 78	T: 60	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 226
Reads contain 451 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 287
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 142
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 287
Contig length: 309
Avg. contig coverage: 1.37
Consensus contains:	A: 90	C: 64	G: 72	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 212
Reads contain 425 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 288
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 140
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 288
Contig length: 593
Avg. contig coverage: 1
Consensus contains:	A: 144	C: 143	G: 167	T: 139	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 593
Reads contain 593 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 289
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 139
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 289
Contig length: 384
Avg. contig coverage: 1.39
Consensus contains:	A: 136	C: 90	G: 66	T: 88	N: 0
			IUPAC: 2	Funny: 0	*: 2

Num reads: 2
Avg. read length: 268
Reads contain 534 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 290
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 137
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 290
Contig length: 503
Avg. contig coverage: 1.27
Consensus contains:	A: 145	C: 101	G: 114	T: 137	N: 0
			IUPAC: 5	Funny: 0	*: 1

Num reads: 2
Avg. read length: 321
Reads contain 640 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 291
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 135
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 291
Contig length: 732
Avg. contig coverage: 1.1
Consensus contains:	A: 148	C: 138	G: 212	T: 232	N: 1
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 405
Reads contain 810 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 292
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 133
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 292
Contig length: 287
Avg. contig coverage: 1.3
Consensus contains:	A: 54	C: 75	G: 62	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 187
Reads contain 374 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 293
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 131
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 293
Contig length: 271
Avg. contig coverage: 1
Consensus contains:	A: 49	C: 85	G: 75	T: 62	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 271
Reads contain 271 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 294
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 130
+[1] +a++++++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 294
Contig length: 682
Avg. contig coverage: 5.05
Consensus contains:	A: 148	C: 186	G: 155	T: 170	N: 0
			IUPAC: 17	Funny: 0	*: 6

Num reads: 8
Avg. read length: 430
Reads contain 3424 bases, 3 Ns and 19 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 295
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 122
+[1] +aa+aaa
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 295
Contig length: 610
Avg. contig coverage: 2.04
Consensus contains:	A: 135	C: 134	G: 168	T: 162	N: 0
			IUPAC: 11	Funny: 0	*: 0

Num reads: 3
Avg. read length: 415
Reads contain 1237 bases, 4 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 296
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 119
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 296
Contig length: 407
Avg. contig coverage: 1.92
Consensus contains:	A: 103	C: 103	G: 88	T: 107	N: 0
			IUPAC: 5	Funny: 0	*: 1

Num reads: 2
Avg. read length: 392
Reads contain 783 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 297
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 117
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 297
Contig length: 462
Avg. contig coverage: 2.94
Consensus contains:	A: 101	C: 104	G: 120	T: 134	N: 0
			IUPAC: 2	Funny: 0	*: 1

Num reads: 3
Avg. read length: 453
Reads contain 1358 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 298
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 114
+[1] +++aa
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 298
Contig length: 619
Avg. contig coverage: 2.69
Consensus contains:	A: 134	C: 133	G: 163	T: 171	N: 0
			IUPAC: 16	Funny: 0	*: 2

Num reads: 4
Avg. read length: 416
Reads contain 1657 bases, 3 Ns and 6 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 299
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 110
+[1] +++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 299
Contig length: 631
Avg. contig coverage: 2.89
Consensus contains:	A: 127	C: 149	G: 165	T: 150	N: 0
			IUPAC: 35	Funny: 0	*: 5

Num reads: 4
Avg. read length: 456
Reads contain 1812 bases, 0 Ns and 12 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 300
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 106
+[1] ++a
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 300
Contig length: 908
Avg. contig coverage: 1.82
Consensus contains:	A: 223	C: 170	G: 206	T: 281	N: 0
			IUPAC: 27	Funny: 0	*: 1

Num reads: 3
Avg. read length: 552
Reads contain 1657 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 301
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 103
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 301
Contig length: 433
Avg. contig coverage: 1.53
Consensus contains:	A: 93	C: 95	G: 124	T: 121	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 333
Reads contain 666 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 302
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 101
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 302
Contig length: 861
Avg. contig coverage: 1.4
Consensus contains:	A: 273	C: 192	G: 176	T: 214	N: 0
			IUPAC: 5	Funny: 0	*: 1

Num reads: 3
Avg. read length: 403
Reads contain 1208 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 303
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 98
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 303
Contig length: 419
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 112	G: 99	T: 127	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 419
Reads contain 417 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 304
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 97
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 304
Contig length: 510
Avg. contig coverage: 1.58
Consensus contains:	A: 119	C: 117	G: 117	T: 151	N: 0
			IUPAC: 4	Funny: 0	*: 2

Num reads: 2
Avg. read length: 404
Reads contain 803 bases, 0 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 305
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 95
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 305
Contig length: 563
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 153	G: 129	T: 159	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 563
Reads contain 561 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 306
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 94
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 306
Contig length: 568
Avg. contig coverage: 1
Consensus contains:	A: 150	C: 130	G: 134	T: 152	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 568
Reads contain 566 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 307
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 93
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 307
Contig length: 246
Avg. contig coverage: 1
Consensus contains:	A: 54	C: 54	G: 62	T: 76	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 246
Reads contain 246 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 308
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 92
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 308
Contig length: 568
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 133	G: 108	T: 184	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 568
Reads contain 568 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 309
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 91
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 309
Contig length: 478
Avg. contig coverage: 1
Consensus contains:	A: 168	C: 120	G: 83	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 478
Reads contain 478 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 310
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 90
+[1] ++ppa
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 310
Contig length: 509
Avg. contig coverage: 2.55
Consensus contains:	A: 91	C: 147	G: 115	T: 133	N: 0
			IUPAC: 23	Funny: 0	*: 0

Num reads: 3
Avg. read length: 434
Reads contain 1299 bases, 0 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 311
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 87
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 311
Contig length: 549
Avg. contig coverage: 1
Consensus contains:	A: 115	C: 192	G: 112	T: 130	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 549
Reads contain 549 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 312
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 86
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 312
Contig length: 578
Avg. contig coverage: 1
Consensus contains:	A: 175	C: 140	G: 116	T: 147	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 578
Reads contain 578 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 313
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 85
+[1] +pp
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 313
Contig length: 359
Avg. contig coverage: 1.63
Consensus contains:	A: 87	C: 83	G: 96	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 293
Reads contain 587 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 314
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 83
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 314
Contig length: 512
Avg. contig coverage: 1.58
Consensus contains:	A: 126	C: 117	G: 104	T: 164	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 405
Reads contain 809 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 315
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 81
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 315
Contig length: 356
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 83	G: 79	T: 91	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 356
Reads contain 356 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 316
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 80
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 316
Contig length: 441
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 118	G: 107	T: 99	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 441
Reads contain 441 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 317
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 79
+[1] +a
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 317
Contig length: 607
Avg. contig coverage: 1.62
Consensus contains:	A: 150	C: 143	G: 160	T: 153	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 493
Reads contain 986 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 318
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 77
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 318
Contig length: 639
Avg. contig coverage: 1
Consensus contains:	A: 185	C: 125	G: 143	T: 185	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 639
Reads contain 638 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 319
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 76
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 319
Contig length: 495
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 133	G: 107	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 495
Reads contain 495 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 320
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 75
+[1] ++p
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 320
Contig length: 842
Avg. contig coverage: 1.68
Consensus contains:	A: 222	C: 235	G: 178	T: 205	N: 0
			IUPAC: 0	Funny: 0	*: 2

Num reads: 3
Avg. read length: 471
Reads contain 1412 bases, 1 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 321
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 72
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 321
Contig length: 423
Avg. contig coverage: 1.89
Consensus contains:	A: 105	C: 96	G: 98	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 401
Reads contain 800 bases, 1 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 322
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 70
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 322
Contig length: 359
Avg. contig coverage: 1.54
Consensus contains:	A: 89	C: 81	G: 73	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 276
Reads contain 553 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 323
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 68
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 323
Contig length: 544
Avg. contig coverage: 1.92
Consensus contains:	A: 177	C: 134	G: 100	T: 133	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 522
Reads contain 1044 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 324
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 66
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 324
Contig length: 616
Avg. contig coverage: 1
Consensus contains:	A: 178	C: 144	G: 155	T: 138	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 616
Reads contain 615 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 325
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 65
+[1] +++p
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 325
Contig length: 425
Avg. contig coverage: 3.52
Consensus contains:	A: 106	C: 114	G: 100	T: 95	N: 0
			IUPAC: 6	Funny: 0	*: 4

Num reads: 4
Avg. read length: 374
Reads contain 1486 bases, 0 Ns and 11 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 326
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 61
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 326
Contig length: 261
Avg. contig coverage: 1
Consensus contains:	A: 39	C: 65	G: 75	T: 82	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 261
Reads contain 261 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 327
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 60
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 327
Contig length: 583
Avg. contig coverage: 1
Consensus contains:	A: 169	C: 114	G: 148	T: 152	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 583
Reads contain 583 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 328
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 59
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 328
Contig length: 391
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 59	G: 136	T: 95	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 391
Reads contain 391 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 329
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 58
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 329
Contig length: 223
Avg. contig coverage: 1
Consensus contains:	A: 53	C: 38	G: 87	T: 45	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 223
Reads contain 223 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 330
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 57
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 330
Contig length: 429
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 116	G: 99	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 429
Reads contain 429 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 331
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 56
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 331
Contig length: 354
Avg. contig coverage: 1
Consensus contains:	A: 91	C: 100	G: 86	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 354
Reads contain 354 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 332
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 55
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 332
Contig length: 604
Avg. contig coverage: 1
Consensus contains:	A: 145	C: 145	G: 163	T: 150	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 604
Reads contain 603 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 333
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 54
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 333
Contig length: 477
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 101	G: 114	T: 140	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 477
Reads contain 477 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 334
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 53
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 334
Contig length: 312
Avg. contig coverage: 1
Consensus contains:	A: 86	C: 110	G: 70	T: 46	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 312
Reads contain 312 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 335
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 52
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 335
Contig length: 493
Avg. contig coverage: 1.51
Consensus contains:	A: 97	C: 145	G: 115	T: 135	N: 0
			IUPAC: 0	Funny: 0	*: 1

Num reads: 2
Avg. read length: 374
Reads contain 746 bases, 1 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 336
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 50
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 336
Contig length: 492
Avg. contig coverage: 1.33
Consensus contains:	A: 137	C: 116	G: 142	T: 96	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 328
Reads contain 657 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 337
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 48
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 337
Contig length: 247
Avg. contig coverage: 1
Consensus contains:	A: 81	C: 54	G: 74	T: 38	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 247
Reads contain 247 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 338
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 47
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 338
Contig length: 155
Avg. contig coverage: 1
Consensus contains:	A: 47	C: 47	G: 39	T: 22	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 155
Reads contain 155 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 339
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 46
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 339
Contig length: 456
Avg. contig coverage: 1.58
Consensus contains:	A: 122	C: 128	G: 73	T: 123	N: 0
			IUPAC: 5	Funny: 0	*: 5

Num reads: 2
Avg. read length: 362
Reads contain 718 bases, 0 Ns and 6 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 340
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 44
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 340
Contig length: 182
Avg. contig coverage: 1
Consensus contains:	A: 44	C: 35	G: 60	T: 43	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 182
Reads contain 182 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 341
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 43
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 341
Contig length: 410
Avg. contig coverage: 1
Consensus contains:	A: 96	C: 100	G: 107	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 410
Reads contain 410 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 342
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 42
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 342
Contig length: 296
Avg. contig coverage: 1
Consensus contains:	A: 87	C: 71	G: 61	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 296
Reads contain 296 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 343
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 41
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 343
Contig length: 494
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 106	G: 112	T: 136	N: 3
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 494
Reads contain 491 bases, 3 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 344
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 40
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 344
Contig length: 454
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 115	G: 125	T: 97	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 454
Reads contain 453 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 345
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 39
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 345
Contig length: 437
Avg. contig coverage: 1.89
Consensus contains:	A: 126	C: 112	G: 94	T: 98	N: 0
			IUPAC: 4	Funny: 0	*: 3

Num reads: 2
Avg. read length: 414
Reads contain 823 bases, 2 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 346
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 37
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 346
Contig length: 171
Avg. contig coverage: 1
Consensus contains:	A: 39	C: 43	G: 48	T: 40	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 171
Reads contain 170 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 347
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 36
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 347
Contig length: 134
Avg. contig coverage: 1
Consensus contains:	A: 41	C: 27	G: 38	T: 28	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 134
Reads contain 134 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 348
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 35
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 348
Contig length: 253
Avg. contig coverage: 1
Consensus contains:	A: 62	C: 52	G: 75	T: 64	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 253
Reads contain 253 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 349
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 34
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 349
Contig length: 174
Avg. contig coverage: 1
Consensus contains:	A: 40	C: 50	G: 47	T: 37	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 174
Reads contain 174 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 350
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 33
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 350
Contig length: 318
Avg. contig coverage: 1
Consensus contains:	A: 70	C: 88	G: 94	T: 66	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 318
Reads contain 318 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 351
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 32
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 351
Contig length: 395
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 98	G: 84	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 395
Reads contain 395 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 352
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 31
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 352
Contig length: 136
Avg. contig coverage: 1
Consensus contains:	A: 26	C: 30	G: 36	T: 44	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 136
Reads contain 136 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 353
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 30
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 353
Contig length: 404
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 79	G: 91	T: 121	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 404
Reads contain 403 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 354
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 29
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 354
Contig length: 460
Avg. contig coverage: 1
Consensus contains:	A: 134	C: 92	G: 131	T: 103	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 460
Reads contain 460 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 355
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 28
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 355
Contig length: 264
Avg. contig coverage: 1
Consensus contains:	A: 51	C: 64	G: 92	T: 57	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 264
Reads contain 264 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 356
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 27
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 356
Contig length: 559
Avg. contig coverage: 1
Consensus contains:	A: 145	C: 121	G: 148	T: 145	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 559
Reads contain 559 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 357
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 26
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 357
Contig length: 467
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 131	G: 109	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 467
Reads contain 467 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 358
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 25
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 358
Contig length: 357
Avg. contig coverage: 1.81
Consensus contains:	A: 114	C: 97	G: 53	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 2
Avg. read length: 323
Reads contain 647 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 359
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 23
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 359
Contig length: 430
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 115	G: 75	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 430
Reads contain 430 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 360
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 22
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 360
Contig length: 493
Avg. contig coverage: 1
Consensus contains:	A: 136	C: 116	G: 124	T: 116	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 493
Reads contain 492 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 361
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 21
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 361
Contig length: 466
Avg. contig coverage: 1
Consensus contains:	A: 153	C: 90	G: 117	T: 105	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 466
Reads contain 465 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 362
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 20
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 362
Contig length: 429
Avg. contig coverage: 1
Consensus contains:	A: 83	C: 107	G: 120	T: 118	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 429
Reads contain 428 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 363
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 19
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 363
Contig length: 396
Avg. contig coverage: 1
Consensus contains:	A: 84	C: 87	G: 118	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 396
Reads contain 396 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 364
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 18
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 364
Contig length: 427
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 107	G: 100	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 427
Reads contain 427 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 365
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 17
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 365
Contig length: 308
Avg. contig coverage: 1
Consensus contains:	A: 75	C: 82	G: 84	T: 67	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 308
Reads contain 308 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 366
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 16
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 366
Contig length: 332
Avg. contig coverage: 1
Consensus contains:	A: 74	C: 73	G: 87	T: 98	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 332
Reads contain 332 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 367
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 15
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 367
Contig length: 459
Avg. contig coverage: 1
Consensus contains:	A: 129	C: 107	G: 113	T: 110	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 459
Reads contain 459 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 368
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 14
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 368
Contig length: 375
Avg. contig coverage: 1
Consensus contains:	A: 77	C: 88	G: 114	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 375
Reads contain 375 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 369
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 13
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 369
Contig length: 384
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 85	G: 117	T: 80	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 384
Reads contain 384 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 370
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 12
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 370
Contig length: 417
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 118	G: 114	T: 71	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 417
Reads contain 417 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 371
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 11
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 371
Contig length: 295
Avg. contig coverage: 1
Consensus contains:	A: 73	C: 69	G: 70	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 295
Reads contain 295 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 372
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 10
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 372
Contig length: 133
Avg. contig coverage: 1
Consensus contains:	A: 53	C: 26	G: 30	T: 24	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 133
Reads contain 133 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 373
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 9
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 373
Contig length: 237
Avg. contig coverage: 1
Consensus contains:	A: 74	C: 55	G: 60	T: 48	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 237
Reads contain 237 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 374
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 8
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 374
Contig length: 333
Avg. contig coverage: 1
Consensus contains:	A: 92	C: 95	G: 59	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 333
Reads contain 333 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 375
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 7
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 375
Contig length: 452
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 113	G: 118	T: 109	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 452
Reads contain 452 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 376
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 6
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 376
Contig length: 323
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 75	G: 60	T: 98	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 323
Reads contain 323 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 377
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 5
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 377
Contig length: 292
Avg. contig coverage: 1
Consensus contains:	A: 74	C: 75	G: 85	T: 58	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 292
Reads contain 292 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 378
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 4
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 378
Contig length: 483
Avg. contig coverage: 1
Consensus contains:	A: 148	C: 131	G: 76	T: 128	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 483
Reads contain 483 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 379
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 3
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 379
Contig length: 426
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 102	G: 105	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 426
Reads contain 426 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 380
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 2
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 380
Contig length: 400
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 87	G: 106	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 400
Reads contain 400 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 381
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 381
Contig length: 157
Avg. contig coverage: 1
Consensus contains:	A: 37	C: 35	G: 46	T: 39	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 157
Reads contain 157 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Saving project statistics to file: default_log/default_info_contigstats_pass.1.txt
Saving read tag list to file: default_log/default_info_readtaglist.1.txt
Saving contig tag list to file: default_log/default_info_consensustaglist.1.txt
Saving project contig<->read list to file: default_log/default_info_contigreadlist_pass.1.txt
Localtime: Thu Jul 15 12:00:00 2010
Saving project statistics to file: default_info/default_info_contigstats.txt
Localtime: Thu Jul 15 12:00:00 2010
Saving read tag list to file: default_info/default_info_readtaglist.txt
Localtime: Thu Jul 15 12:00:00 2010
Saving contig tag list to file: default_info/default_info_consensustaglist.txt
Localtime: Thu Jul 15 12:00:00 2010
Saving project contig<->read list to file: default_info/default_info_contigreadlist.txt
Localtime: Thu Jul 15 12:00:00 2010
Saving contigs to file: default_results/default_out.caf
Localtime: Thu Jul 15 12:00:00 2010
Saving contigs to directory: default_results/default_out.gap4da
(first deleting old directory)
(now creating new directory)
(saving contigs)
Done.
Localtime: Thu Jul 15 12:00:00 2010
Saving contigs to FASTA file: default_results/default_out.unpadded.fasta
Saving padded contigs to FASTA file: default_results/default_out.padded.fasta
Saving contig qualities to FASTA quality file: default_results/default_out.unpadded.fasta.qual
Saving padded contig qualities to FASTA quality file: default_results/default_out.padded.fasta.qual
Localtime: Thu Jul 15 12:00:00 2010
Saving SNP analysis to file: default_info/default_info_snpanalysis.txt
Finished assembly, extracting contigs.
Assembly of strain step1_nosnps_remain.caf(remain)
Creating directory remain_log ... done.
Creating directory remain_results ... done.
Creating directory remain_info ... done.
Localtime: Thu Jul 15 12:00:00 2010

Loading project from CAF file: step1_nosnps_remain.caf
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
Localtime: Thu Jul 15 12:00:00 2010

Loading straindata.
Building hash table ... done.

Read 0 straindata lines.
Warning: gnlti136477494 has no strain. Using default strain.
Warning: gnlti136477495 has no strain. Using default strain.
Warning: gnlti136477496 has no strain. Using default strain.
Warning: gnlti136477497 has no strain. Using default strain.
Warning: gnlti136477500 has no strain. Using default strain.
Warning: gnlti136477502 has no strain. Using default strain.
Warning: gnlti136477503 has no strain. Using default strain.
Warning: gnlti136477504 has no strain. Using default strain.
Warning: gnlti136477507 has no strain. Using default strain.
Warning: gnlti136477511 has no strain. Using default strain.
Warning: gnlti136477512 has no strain. Using default strain.
Warning: gnlti136477513 has no strain. Using default strain.
Warning: gnlti136477514 has no strain. Using default strain.
Warning: gnlti136477516 has no strain. Using default strain.
Warning: gnlti136477517 has no strain. Using default strain.
Warning: gnlti136477518 has no strain. Using default strain.
Warning: gnlti136477519 has no strain. Using default strain.
Warning: gnlti136477520 has no strain. Using default strain.
Warning: gnlti136477521 has no strain. Using default strain.
Warning: gnlti136477522 has no strain. Using default strain.
Warning: gnlti136477524 has no strain. Using default strain.
Warning: gnlti136477526 has no strain. Using default strain.
Warning: gnlti136477527 has no strain. Using default strain.
Warning: gnlti136477530 has no strain. Using default strain.
Warning: gnlti136477531 has no strain. Using default strain.
Warning: gnlti136477532 has no strain. Using default strain.
Warning: gnlti136477534 has no strain. Using default strain.
Warning: gnlti136477536 has no strain. Using default strain.
Warning: gnlti136477537 has no strain. Using default strain.
Warning: gnlti136477538 has no strain. Using default strain.
Warning: gnlti136477540 has no strain. Using default strain.
Warning: gnlti136477541 has no strain. Using default strain.
Warning: gnlti136477542 has no strain. Using default strain.
Warning: gnlti136477543 has no strain. Using default strain.
Warning: gnlti136477544 has no strain. Using default strain.
Warning: gnlti136477546 has no strain. Using default strain.
Warning: gnlti136477547 has no strain. Using default strain.
Warning: gnlti136477548 has no strain. Using default strain.
Warning: gnlti136477550 has no strain. Using default strain.
Warning: gnlti136477551 has no strain. Using default strain.
Warning: gnlti136477552 has no strain. Using default strain.
Warning: gnlti136477553 has no strain. Using default strain.
Warning: gnlti136477554 has no strain. Using default strain.
Warning: gnlti136477556 has no strain. Using default strain.
Warning: gnlti136477558 has no strain. Using default strain.
Warning: gnlti136477563 has no strain. Using default strain.
Warning: gnlti136477564 has no strain. Using default strain.
Warning: gnlti136477565 has no strain. Using default strain.
Warning: gnlti136477566 has no strain. Using default strain.
Warning: gnlti136477567 has no strain. Using default strain.
Warning: gnlti136477569 has no strain. Using default strain.
Warning: gnlti136477571 has no strain. Using default strain.
Warning: gnlti136477572 has no strain. Using default strain.
Warning: gnlti136477574 has no strain. Using default strain.
Warning: gnlti136477576 has no strain. Using default strain.
Warning: gnlti136477577 has no strain. Using default strain.
Warning: gnlti136477578 has no strain. Using default strain.
Warning: gnlti136477581 has no strain. Using default strain.
Warning: gnlti136477582 has no strain. Using default strain.
Warning: gnlti136477583 has no strain. Using default strain.
Warning: gnlti136477584 has no strain. Using default strain.
Warning: gnlti136477585 has no strain. Using default strain.
Warning: gnlti136477586 has no strain. Using default strain.
Warning: gnlti136477587 has no strain. Using default strain.
Warning: gnlti136477589 has no strain. Using default strain.
Warning: gnlti136477590 has no strain. Using default strain.
Warning: gnlti136477594 has no strain. Using default strain.
Warning: gnlti136477595 has no strain. Using default strain.
Warning: gnlti136477596 has no strain. Using default strain.
Warning: gnlti136477597 has no strain. Using default strain.
Warning: gnlti136477598 has no strain. Using default strain.
Warning: gnlti136477599 has no strain. Using default strain.
Warning: gnlti136477600 has no strain. Using default strain.
Warning: gnlti136477601 has no strain. Using default strain.
Warning: gnlti136477602 has no strain. Using default strain.
Warning: gnlti136477603 has no strain. Using default strain.
Warning: gnlti136477604 has no strain. Using default strain.
Warning: gnlti136477606 has no strain. Using default strain.
Warning: gnlti136477607 has no strain. Using default strain.
Warning: gnlti136477608 has no strain. Using default strain.
Warning: gnlti136477610 has no strain. Using default strain.
Warning: gnlti136477611 has no strain. Using default strain.
Warning: gnlti136477612 has no strain. Using default strain.
Warning: gnlti136477613 has no strain. Using default strain.
Warning: gnlti136477614 has no strain. Using default strain.
Warning: gnlti136477620 has no strain. Using default strain.
Warning: gnlti136477621 has no strain. Using default strain.
Warning: gnlti136477622 has no strain. Using default strain.
Warning: gnlti136477623 has no strain. Using default strain.
Warning: gnlti136477624 has no strain. Using default strain.
Warning: gnlti136477625 has no strain. Using default strain.
Warning: gnlti136477626 has no strain. Using default strain.
Warning: gnlti136477627 has no strain. Using default strain.
Warning: gnlti136477630 has no strain. Using default strain.
Warning: gnlti136477632 has no strain. Using default strain.
Warning: gnlti136477633 has no strain. Using default strain.
Warning: gnlti136477634 has no strain. Using default strain.
Warning: gnlti136477635 has no strain. Using default strain.
Warning: gnlti136477636 has no strain. Using default strain.
Warning: gnlti136477638 has no strain. Using default strain.
Warning: gnlti136477639 has no strain. Using default strain.
Warning: gnlti136477640 has no strain. Using default strain.
Warning: gnlti136477641 has no strain. Using default strain.
Warning: gnlti136477643 has no strain. Using default strain.
Warning: gnlti136477644 has no strain. Using default strain.
Warning: gnlti136477645 has no strain. Using default strain.
Warning: gnlti136477646 has no strain. Using default strain.
Warning: gnlti136477647 has no strain. Using default strain.
Warning: gnlti136477648 has no strain. Using default strain.
Warning: gnlti136477649 has no strain. Using default strain.
Warning: gnlti136477650 has no strain. Using default strain.
Warning: gnlti136477651 has no strain. Using default strain.
Warning: gnlti136477652 has no strain. Using default strain.
Warning: gnlti136477653 has no strain. Using default strain.
Warning: gnlti136477654 has no strain. Using default strain.
Warning: gnlti136477655 has no strain. Using default strain.
Warning: gnlti136477656 has no strain. Using default strain.
Warning: gnlti136477658 has no strain. Using default strain.
Warning: gnlti136477659 has no strain. Using default strain.
Warning: gnlti136477660 has no strain. Using default strain.
Warning: gnlti136477661 has no strain. Using default strain.
Warning: gnlti136477663 has no strain. Using default strain.
Warning: gnlti136477664 has no strain. Using default strain.
Warning: gnlti136477665 has no strain. Using default strain.
Warning: gnlti136477667 has no strain. Using default strain.
Warning: gnlti136477668 has no strain. Using default strain.
Warning: gnlti136477669 has no strain. Using default strain.
Warning: gnlti136477674 has no strain. Using default strain.
Warning: gnlti136477678 has no strain. Using default strain.
Warning: gnlti136477680 has no strain. Using default strain.
Warning: gnlti136477681 has no strain. Using default strain.
Warning: gnlti136477683 has no strain. Using default strain.
Warning: gnlti136477685 has no strain. Using default strain.
Warning: gnlti136477686 has no strain. Using default strain.
Warning: gnlti136477687 has no strain. Using default strain.
Warning: gnlti136477689 has no strain. Using default strain.
Warning: gnlti136477690 has no strain. Using default strain.
Warning: gnlti136477691 has no strain. Using default strain.
Warning: gnlti136477692 has no strain. Using default strain.
Warning: gnlti136477694 has no strain. Using default strain.
Warning: gnlti136477695 has no strain. Using default strain.
Warning: gnlti136477696 has no strain. Using default strain.
Warning: gnlti136477697 has no strain. Using default strain.
Warning: gnlti136477698 has no strain. Using default strain.
Warning: gnlti136477700 has no strain. Using default strain.
Warning: gnlti136477701 has no strain. Using default strain.
Warning: gnlti136477704 has no strain. Using default strain.
Warning: gnlti136477705 has no strain. Using default strain.
Warning: gnlti136477706 has no strain. Using default strain.
Warning: gnlti136477707 has no strain. Using default strain.
Warning: gnlti136477708 has no strain. Using default strain.
Warning: gnlti136477709 has no strain. Using default strain.
Warning: gnlti136477710 has no strain. Using default strain.
Warning: gnlti136477711 has no strain. Using default strain.
Warning: gnlti136477712 has no strain. Using default strain.
Warning: gnlti136477713 has no strain. Using default strain.
Warning: gnlti136477714 has no strain. Using default strain.
Warning: gnlti136477715 has no strain. Using default strain.
Warning: gnlti136477716 has no strain. Using default strain.
Warning: gnlti136477717 has no strain. Using default strain.
Warning: gnlti136477719 has no strain. Using default strain.
Warning: gnlti136477720 has no strain. Using default strain.
Warning: gnlti136477721 has no strain. Using default strain.
Warning: gnlti136477723 has no strain. Using default strain.
Warning: gnlti136477724 has no strain. Using default strain.
Warning: gnlti136477725 has no strain. Using default strain.
Warning: gnlti136477727 has no strain. Using default strain.
Warning: gnlti136477729 has no strain. Using default strain.
Warning: gnlti136477730 has no strain. Using default strain.
Warning: gnlti136477731 has no strain. Using default strain.
Warning: gnlti136477733 has no strain. Using default strain.
Warning: gnlti136477735 has no strain. Using default strain.
Warning: gnlti136477736 has no strain. Using default strain.
Warning: gnlti136477737 has no strain. Using default strain.
Warning: gnlti136477738 has no strain. Using default strain.
Warning: gnlti136477740 has no strain. Using default strain.
Warning: gnlti136477741 has no strain. Using default strain.
Warning: gnlti136477742 has no strain. Using default strain.
Warning: gnlti136477743 has no strain. Using default strain.
Warning: gnlti136477744 has no strain. Using default strain.
Warning: gnlti136477745 has no strain. Using default strain.
Warning: gnlti136477747 has no strain. Using default strain.
Warning: gnlti136477748 has no strain. Using default strain.
Warning: gnlti136477749 has no strain. Using default strain.
Warning: gnlti136477750 has no strain. Using default strain.
Warning: gnlti136477751 has no strain. Using default strain.
Warning: gnlti136477754 has no strain. Using default strain.
Warning: gnlti136477756 has no strain. Using default strain.
Warning: gnlti136477757 has no strain. Using default strain.
Warning: gnlti136477758 has no strain. Using default strain.
Warning: gnlti136477759 has no strain. Using default strain.
Warning: gnlti136477761 has no strain. Using default strain.
Warning: gnlti136477762 has no strain. Using default strain.
Warning: gnlti136477763 has no strain. Using default strain.
Warning: gnlti136477764 has no strain. Using default strain.
Warning: gnlti136477765 has no strain. Using default strain.
Warning: gnlti136477766 has no strain. Using default strain.
Warning: gnlti136477767 has no strain. Using default strain.
Warning: gnlti136477768 has no strain. Using default strain.
Warning: gnlti136477769 has no strain. Using default strain.
Warning: gnlti136477770 has no strain. Using default strain.
Warning: gnlti136477771 has no strain. Using default strain.
Warning: gnlti136477773 has no strain. Using default strain.
Warning: gnlti136477774 has no strain. Using default strain.
Warning: gnlti136477775 has no strain. Using default strain.
Warning: gnlti136477776 has no strain. Using default strain.
Warning: gnlti136477777 has no strain. Using default strain.
Warning: gnlti136477779 has no strain. Using default strain.
Warning: gnlti136477780 has no strain. Using default strain.
Warning: gnlti136477781 has no strain. Using default strain.
Warning: gnlti136477788 has no strain. Using default strain.
Warning: gnlti136477789 has no strain. Using default strain.
Warning: gnlti136477790 has no strain. Using default strain.
Warning: gnlti136477792 has no strain. Using default strain.
Warning: gnlti136477794 has no strain. Using default strain.
Warning: gnlti136477797 has no strain. Using default strain.
Warning: gnlti136477798 has no strain. Using default strain.
Warning: gnlti136477799 has no strain. Using default strain.
Warning: gnlti136477800 has no strain. Using default strain.
Warning: gnlti136477801 has no strain. Using default strain.
Warning: gnlti136477802 has no strain. Using default strain.
Warning: gnlti136477803 has no strain. Using default strain.
Warning: gnlti136477804 has no strain. Using default strain.
Warning: gnlti136477805 has no strain. Using default strain.
Warning: gnlti136477806 has no strain. Using default strain.
Warning: gnlti136477807 has no strain. Using default strain.
Warning: gnlti136477808 has no strain. Using default strain.
Warning: gnlti136477809 has no strain. Using default strain.
Warning: gnlti136477811 has no strain. Using default strain.
Warning: gnlti136477812 has no strain. Using default strain.
Warning: gnlti136477814 has no strain. Using default strain.
Warning: gnlti136477815 has no strain. Using default strain.
Warning: gnlti136477816 has no strain. Using default strain.
Warning: gnlti136477818 has no strain. Using default strain.
Warning: gnlti136477819 has no strain. Using default strain.
Warning: gnlti136477820 has no strain. Using default strain.
Warning: gnlti136477821 has no strain. Using default strain.
Warning: gnlti136477823 has no strain. Using default strain.
Warning: gnlti136477824 has no strain. Using default strain.
Warning: gnlti136477825 has no strain. Using default strain.
Warning: gnlti136477826 has no strain. Using default strain.
Warning: gnlti136477827 has no strain. Using default strain.
Warning: gnlti136477828 has no strain. Using default strain.
Warning: gnlti136477829 has no strain. Using default strain.
Warning: gnlti136477830 has no strain. Using default strain.
Warning: gnlti136477831 has no strain. Using default strain.
Warning: gnlti136477832 has no strain. Using default strain.
Warning: gnlti136477833 has no strain. Using default strain.
Warning: gnlti136477834 has no strain. Using default strain.
Warning: gnlti136477835 has no strain. Using default strain.
Warning: gnlti136477836 has no strain. Using default strain.
Warning: gnlti136477837 has no strain. Using default strain.
Warning: gnlti136477839 has no strain. Using default strain.
Warning: gnlti136477840 has no strain. Using default strain.
Warning: gnlti136477841 has no strain. Using default strain.
Warning: gnlti136477842 has no strain. Using default strain.
Warning: gnlti136477843 has no strain. Using default strain.
Warning: gnlti136477844 has no strain. Using default strain.
Warning: gnlti136477845 has no strain. Using default strain.
Warning: gnlti136477846 has no strain. Using default strain.
Warning: gnlti136477847 has no strain. Using default strain.
Warning: gnlti136477848 has no strain. Using default strain.
Warning: gnlti136477849 has no strain. Using default strain.
Warning: gnlti136477850 has no strain. Using default strain.
Warning: gnlti136477852 has no strain. Using default strain.
Warning: gnlti136477853 has no strain. Using default strain.
Warning: gnlti136477854 has no strain. Using default strain.
Warning: gnlti136477855 has no strain. Using default strain.
Warning: gnlti136477856 has no strain. Using default strain.
Warning: gnlti136477857 has no strain. Using default strain.
Warning: gnlti136477858 has no strain. Using default strain.
Warning: gnlti136477859 has no strain. Using default strain.
Warning: gnlti136477860 has no strain. Using default strain.
Warning: gnlti136477861 has no strain. Using default strain.
Warning: gnlti136477863 has no strain. Using default strain.
Warning: gnlti136477864 has no strain. Using default strain.
Warning: gnlti136477865 has no strain. Using default strain.
Warning: gnlti136477866 has no strain. Using default strain.
Warning: gnlti136477867 has no strain. Using default strain.
Warning: gnlti136477868 has no strain. Using default strain.
Warning: gnlti136477869 has no strain. Using default strain.
Warning: gnlti136477870 has no strain. Using default strain.
Warning: gnlti136477871 has no strain. Using default strain.
Warning: gnlti136477872 has no strain. Using default strain.
Warning: gnlti136477873 has no strain. Using default strain.
Warning: gnlti136477874 has no strain. Using default strain.
Warning: gnlti136477875 has no strain. Using default strain.
Warning: gnlti136477877 has no strain. Using default strain.
Warning: gnlti136477878 has no strain. Using default strain.
Warning: gnlti136477879 has no strain. Using default strain.
Warning: gnlti136477881 has no strain. Using default strain.
Warning: gnlti136477882 has no strain. Using default strain.
Warning: gnlti136477883 has no strain. Using default strain.
Warning: gnlti136477886 has no strain. Using default strain.
Warning: gnlti136477887 has no strain. Using default strain.
Warning: gnlti136477893 has no strain. Using default strain.
Warning: gnlti136477895 has no strain. Using default strain.
Warning: gnlti136477896 has no strain. Using default strain.
Warning: gnlti136477898 has no strain. Using default strain.
Warning: gnlti136477899 has no strain. Using default strain.
Warning: gnlti136477903 has no strain. Using default strain.
Warning: gnlti136477905 has no strain. Using default strain.
Warning: gnlti136477906 has no strain. Using default strain.
Warning: gnlti136477908 has no strain. Using default strain.
Warning: gnlti136477909 has no strain. Using default strain.
Warning: gnlti136477910 has no strain. Using default strain.
Warning: gnlti136477911 has no strain. Using default strain.
Warning: gnlti136477912 has no strain. Using default strain.
Warning: gnlti136477913 has no strain. Using default strain.
Warning: gnlti136477914 has no strain. Using default strain.
Warning: gnlti136477915 has no strain. Using default strain.
Warning: gnlti136477917 has no strain. Using default strain.
Warning: gnlti136477919 has no strain. Using default strain.
Warning: gnlti136477920 has no strain. Using default strain.
Warning: gnlti136477921 has no strain. Using default strain.
Warning: gnlti136477922 has no strain. Using default strain.
Warning: gnlti136477923 has no strain. Using default strain.
Warning: gnlti136477924 has no strain. Using default strain.
Warning: gnlti136477925 has no strain. Using default strain.
Warning: gnlti136477927 has no strain. Using default strain.
Warning: gnlti136477928 has no strain. Using default strain.
Warning: gnlti136477929 has no strain. Using default strain.
Warning: gnlti136477931 has no strain. Using default strain.
Warning: gnlti136477932 has no strain. Using default strain.
Warning: gnlti136477934 has no strain. Using default strain.
Warning: gnlti136477936 has no strain. Using default strain.
Warning: gnlti136477941 has no strain. Using default strain.
Warning: gnlti136477942 has no strain. Using default strain.
Warning: gnlti136477944 has no strain. Using default strain.
Warning: gnlti136477945 has no strain. Using default strain.
Warning: gnlti136477946 has no strain. Using default strain.
Warning: gnlti136477948 has no strain. Using default strain.
Warning: gnlti136477949 has no strain. Using default strain.
Warning: gnlti136477950 has no strain. Using default strain.
Warning: gnlti136477951 has no strain. Using default strain.
Warning: gnlti136477952 has no strain. Using default strain.
Warning: gnlti136477953 has no strain. Using default strain.
Warning: gnlti136477954 has no strain. Using default strain.
Warning: gnlti136477956 has no strain. Using default strain.
Warning: gnlti136477957 has no strain. Using default strain.
Warning: gnlti136477958 has no strain. Using default strain.
Warning: gnlti136477959 has no strain. Using default strain.
Warning: gnlti136477960 has no strain. Using default strain.
Warning: gnlti136477963 has no strain. Using default strain.
Warning: gnlti136477964 has no strain. Using default strain.
Warning: gnlti136477965 has no strain. Using default strain.
Warning: gnlti136477966 has no strain. Using default strain.
Warning: gnlti136477969 has no strain. Using default strain.
Warning: gnlti136477970 has no strain. Using default strain.
Warning: gnlti136477973 has no strain. Using default strain.
Warning: gnlti136477974 has no strain. Using default strain.
Warning: gnlti136477975 has no strain. Using default strain.
Warning: gnlti136477976 has no strain. Using default strain.
Warning: gnlti136477979 has no strain. Using default strain.
Warning: gnlti136477980 has no strain. Using default strain.
Warning: gnlti136477982 has no strain. Using default strain.
Warning: gnlti136477985 has no strain. Using default strain.
Warning: gnlti136477986 has no strain. Using default strain.
Warning: gnlti136477990 has no strain. Using default strain.
Warning: gnlti136477991 has no strain. Using default strain.
Warning: gnlti136477992 has no strain. Using default strain.
Warning: gnlti136477993 has no strain. Using default strain.
Warning: gnlti136477996 has no strain. Using default strain.
Warning: gnlti136477998 has no strain. Using default strain.
Warning: gnlti136477999 has no strain. Using default strain.
Warning: gnlti136478000 has no strain. Using default strain.
Warning: gnlti136478001 has no strain. Using default strain.
Warning: gnlti136478002 has no strain. Using default strain.
Warning: gnlti136478004 has no strain. Using default strain.
Warning: gnlti136478005 has no strain. Using default strain.
Warning: gnlti136478007 has no strain. Using default strain.
Warning: gnlti136478009 has no strain. Using default strain.
Warning: gnlti136478010 has no strain. Using default strain.
Warning: gnlti136478013 has no strain. Using default strain.
Warning: gnlti136478014 has no strain. Using default strain.
Warning: gnlti136478016 has no strain. Using default strain.
Warning: gnlti136478017 has no strain. Using default strain.
Warning: gnlti136478018 has no strain. Using default strain.
Warning: gnlti136478021 has no strain. Using default strain.
Warning: gnlti136478022 has no strain. Using default strain.
Warning: gnlti136478023 has no strain. Using default strain.
Warning: gnlti136478025 has no strain. Using default strain.
Warning: gnlti136478026 has no strain. Using default strain.
Warning: gnlti136478027 has no strain. Using default strain.
Warning: gnlti136478028 has no strain. Using default strain.
Warning: gnlti136478029 has no strain. Using default strain.
Warning: gnlti136478030 has no strain. Using default strain.
Warning: gnlti136478034 has no strain. Using default strain.
Warning: gnlti136478035 has no strain. Using default strain.
Warning: gnlti136478036 has no strain. Using default strain.
Warning: gnlti136478038 has no strain. Using default strain.
Warning: gnlti136478039 has no strain. Using default strain.
Warning: gnlti136478040 has no strain. Using default strain.
Warning: gnlti136478041 has no strain. Using default strain.
Warning: gnlti136478043 has no strain. Using default strain.
Warning: gnlti136478044 has no strain. Using default strain.
Warning: gnlti136478045 has no strain. Using default strain.
Warning: gnlti136478046 has no strain. Using default strain.
Warning: gnlti136478049 has no strain. Using default strain.
Warning: gnlti136478050 has no strain. Using default strain.
Warning: gnlti136478052 has no strain. Using default strain.
Warning: gnlti136478054 has no strain. Using default strain.
Warning: gnlti136478055 has no strain. Using default strain.
Warning: gnlti136478056 has no strain. Using default strain.
Warning: gnlti136478058 has no strain. Using default strain.
Warning: gnlti136478059 has no strain. Using default strain.
Warning: gnlti136478060 has no strain. Using default strain.
Warning: gnlti136478061 has no strain. Using default strain.
Warning: gnlti136478062 has no strain. Using default strain.
Warning: gnlti136478063 has no strain. Using default strain.
Warning: gnlti136478065 has no strain. Using default strain.
Warning: gnlti136478066 has no strain. Using default strain.
Warning: gnlti136478067 has no strain. Using default strain.
Warning: gnlti136478068 has no strain. Using default strain.
Warning: gnlti136478069 has no strain. Using default strain.
Warning: gnlti136478071 has no strain. Using default strain.
Warning: gnlti136478073 has no strain. Using default strain.
Warning: gnlti136478074 has no strain. Using default strain.
Warning: gnlti136478075 has no strain. Using default strain.
Warning: gnlti136478076 has no strain. Using default strain.
Warning: gnlti136478077 has no strain. Using default strain.
Warning: gnlti136478080 has no strain. Using default strain.
Warning: gnlti136478083 has no strain. Using default strain.
Warning: gnlti136478085 has no strain. Using default strain.
Warning: gnlti136478086 has no strain. Using default strain.
Warning: gnlti136478087 has no strain. Using default strain.
Warning: gnlti136478088 has no strain. Using default strain.
Warning: gnlti136478089 has no strain. Using default strain.
Warning: gnlti136478091 has no strain. Using default strain.
Warning: gnlti136478093 has no strain. Using default strain.
Warning: gnlti136478095 has no strain. Using default strain.
Warning: gnlti136478096 has no strain. Using default strain.
Warning: gnlti136478097 has no strain. Using default strain.
Warning: gnlti136478098 has no strain. Using default strain.
Warning: gnlti136478099 has no strain. Using default strain.
Warning: gnlti136478101 has no strain. Using default strain.
Warning: gnlti136478103 has no strain. Using default strain.
Warning: gnlti136478104 has no strain. Using default strain.
Warning: gnlti136478105 has no strain. Using default strain.
Warning: gnlti136478107 has no strain. Using default strain.
Warning: gnlti136478108 has no strain. Using default strain.
Warning: gnlti136478110 has no strain. Using default strain.
Warning: gnlti136478112 has no strain. Using default strain.
Warning: gnlti136478113 has no strain. Using default strain.
Warning: gnlti136478114 has no strain. Using default strain.
Warning: gnlti136478115 has no strain. Using default strain.
Warning: gnlti136478118 has no strain. Using default strain.
Warning: gnlti136478119 has no strain. Using default strain.
Warning: gnlti136478122 has no strain. Using default strain.
Warning: gnlti136478123 has no strain. Using default strain.
Warning: gnlti136478124 has no strain. Using default strain.
Warning: gnlti136478125 has no strain. Using default strain.
Warning: gnlti136478126 has no strain. Using default strain.
Warning: gnlti136478128 has no strain. Using default strain.
Warning: gnlti136478129 has no strain. Using default strain.
Warning: gnlti136478130 has no strain. Using default strain.
Warning: gnlti136478131 has no strain. Using default strain.
Warning: gnlti136478132 has no strain. Using default strain.
Warning: gnlti136478133 has no strain. Using default strain.
Warning: gnlti136478134 has no strain. Using default strain.
Warning: gnlti136478136 has no strain. Using default strain.
Warning: gnlti136478137 has no strain. Using default strain.
Warning: gnlti136478138 has no strain. Using default strain.
Warning: gnlti136478140 has no strain. Using default strain.
Warning: gnlti136478141 has no strain. Using default strain.
Warning: gnlti136478142 has no strain. Using default strain.
Warning: gnlti136478143 has no strain. Using default strain.
Warning: gnlti136478145 has no strain. Using default strain.
Warning: gnlti136478146 has no strain. Using default strain.
Warning: gnlti136478147 has no strain. Using default strain.
Warning: gnlti136478148 has no strain. Using default strain.
Warning: gnlti136478150 has no strain. Using default strain.
Warning: gnlti136478152 has no strain. Using default strain.
Warning: gnlti136478154 has no strain. Using default strain.
Warning: gnlti136478155 has no strain. Using default strain.
Warning: gnlti136478156 has no strain. Using default strain.
Warning: gnlti136478157 has no strain. Using default strain.
Warning: gnlti136478158 has no strain. Using default strain.
Warning: gnlti136478159 has no strain. Using default strain.
Warning: gnlti136478161 has no strain. Using default strain.
Warning: gnlti136478162 has no strain. Using default strain.
Warning: gnlti136478163 has no strain. Using default strain.
Warning: gnlti136478164 has no strain. Using default strain.
Warning: gnlti136478165 has no strain. Using default strain.
Warning: gnlti136478167 has no strain. Using default strain.
Warning: gnlti136478168 has no strain. Using default strain.
Warning: gnlti136478169 has no strain. Using default strain.
Warning: gnlti136478170 has no strain. Using default strain.
Warning: gnlti136478171 has no strain. Using default strain.
Warning: gnlti136478172 has no strain. Using default strain.
Warning: gnlti136478174 has no strain. Using default strain.
Warning: gnlti136478175 has no strain. Using default strain.
Warning: gnlti136478178 has no strain. Using default strain.
Warning: gnlti136478179 has no strain. Using default strain.
Warning: gnlti136478180 has no strain. Using default strain.
Warning: gnlti136478181 has no strain. Using default strain.
Warning: gnlti136478182 has no strain. Using default strain.
Warning: gnlti136478183 has no strain. Using default strain.
Warning: gnlti136478184 has no strain. Using default strain.
Warning: gnlti136478186 has no strain. Using default strain.
Warning: gnlti136478187 has no strain. Using default strain.
Warning: gnlti136478188 has no strain. Using default strain.
Warning: gnlti136478189 has no strain. Using default strain.
Warning: gnlti136478190 has no strain. Using default strain.
Warning: gnlti136478192 has no strain. Using default strain.
Warning: gnlti136478193 has no strain. Using default strain.
Warning: gnlti136478195 has no strain. Using default strain.
Warning: gnlti136478196 has no strain. Using default strain.
Warning: gnlti136478197 has no strain. Using default strain.
Warning: gnlti136478198 has no strain. Using default strain.
Warning: gnlti136478199 has no strain. Using default strain.
Warning: gnlti136478202 has no strain. Using default strain.
Warning: gnlti136478203 has no strain. Using default strain.
Warning: gnlti136478204 has no strain. Using default strain.
Warning: gnlti136478206 has no strain. Using default strain.
Warning: gnlti136478207 has no strain. Using default strain.
Warning: gnlti136478208 has no strain. Using default strain.
Warning: gnlti136478209 has no strain. Using default strain.
Warning: gnlti136478211 has no strain. Using default strain.
Warning: gnlti136478213 has no strain. Using default strain.
Warning: gnlti136478214 has no strain. Using default strain.
Warning: gnlti136478216 has no strain. Using default strain.
Warning: gnlti136478218 has no strain. Using default strain.
Warning: gnlti136478221 has no strain. Using default strain.
Warning: gnlti136478222 has no strain. Using default strain.
Warning: gnlti136478223 has no strain. Using default strain.
Warning: gnlti136478226 has no strain. Using default strain.
Warning: gnlti136478227 has no strain. Using default strain.
Warning: gnlti136478228 has no strain. Using default strain.
Warning: gnlti136478229 has no strain. Using default strain.
Warning: gnlti136478230 has no strain. Using default strain.
Warning: gnlti136478231 has no strain. Using default strain.
Warning: gnlti136478232 has no strain. Using default strain.
Warning: gnlti136478233 has no strain. Using default strain.
Warning: gnlti136478234 has no strain. Using default strain.
Warning: gnlti136478237 has no strain. Using default strain.
Warning: gnlti136478239 has no strain. Using default strain.
Warning: gnlti136478240 has no strain. Using default strain.
Warning: gnlti136478241 has no strain. Using default strain.
Warning: gnlti136478244 has no strain. Using default strain.
Warning: gnlti136478247 has no strain. Using default strain.
Warning: gnlti136478249 has no strain. Using default strain.
Warning: gnlti136478251 has no strain. Using default strain.
Warning: gnlti136478252 has no strain. Using default strain.
Warning: gnlti136478253 has no strain. Using default strain.
Warning: gnlti136478254 has no strain. Using default strain.
Warning: gnlti136478256 has no strain. Using default strain.
Warning: gnlti136478258 has no strain. Using default strain.
Warning: gnlti136478259 has no strain. Using default strain.
Warning: gnlti136478260 has no strain. Using default strain.
Warning: gnlti136478261 has no strain. Using default strain.
Warning: gnlti136478262 has no strain. Using default strain.
Warning: gnlti136478265 has no strain. Using default strain.
Warning: gnlti136478266 has no strain. Using default strain.
Warning: gnlti136478268 has no strain. Using default strain.
Warning: gnlti136478269 has no strain. Using default strain.
Warning: gnlti136478270 has no strain. Using default strain.
Warning: gnlti136478271 has no strain. Using default strain.
Warning: gnlti136478274 has no strain. Using default strain.
Warning: gnlti136478275 has no strain. Using default strain.
Warning: gnlti136478277 has no strain. Using default strain.
Warning: gnlti136478280 has no strain. Using default strain.
Warning: gnlti136478281 has no strain. Using default strain.
Warning: gnlti136478282 has no strain. Using default strain.
Warning: gnlti136478285 has no strain. Using default strain.
Warning: gnlti136478288 has no strain. Using default strain.
Warning: gnlti136478289 has no strain. Using default strain.
Warning: gnlti136478293 has no strain. Using default strain.
Warning: gnlti136478294 has no strain. Using default strain.
Warning: gnlti136478295 has no strain. Using default strain.
Warning: gnlti136478296 has no strain. Using default strain.
Warning: gnlti136478297 has no strain. Using default strain.
Warning: gnlti136478299 has no strain. Using default strain.
Warning: gnlti136478300 has no strain. Using default strain.
Warning: gnlti136478302 has no strain. Using default strain.
Warning: gnlti136478303 has no strain. Using default strain.
Warning: gnlti136478304 has no strain. Using default strain.
Warning: gnlti136478305 has no strain. Using default strain.
Warning: gnlti136478306 has no strain. Using default strain.
Warning: gnlti136478307 has no strain. Using default strain.
Warning: gnlti136478308 has no strain. Using default strain.
Warning: gnlti136478309 has no strain. Using default strain.
Warning: gnlti136478310 has no strain. Using default strain.
Warning: gnlti136478315 has no strain. Using default strain.
Warning: gnlti136478316 has no strain. Using default strain.
Warning: gnlti136478317 has no strain. Using default strain.
Warning: gnlti136478319 has no strain. Using default strain.
Warning: gnlti136478320 has no strain. Using default strain.
Warning: gnlti136478321 has no strain. Using default strain.
Warning: gnlti136478322 has no strain. Using default strain.
Warning: gnlti136478327 has no strain. Using default strain.
Warning: gnlti136478329 has no strain. Using default strain.
Warning: gnlti136478330 has no strain. Using default strain.
Warning: gnlti136478331 has no strain. Using default strain.
Warning: gnlti136478332 has no strain. Using default strain.
Warning: gnlti136478333 has no strain. Using default strain.
Warning: gnlti136478338 has no strain. Using default strain.
Warning: gnlti136478339 has no strain. Using default strain.
Warning: gnlti136478340 has no strain. Using default strain.
Warning: gnlti136478342 has no strain. Using default strain.
Warning: gnlti136478343 has no strain. Using default strain.
Warning: gnlti136478344 has no strain. Using default strain.
Warning: gnlti136478345 has no strain. Using default strain.
Warning: gnlti136478346 has no strain. Using default strain.
Warning: gnlti136478347 has no strain. Using default strain.
Warning: gnlti136478348 has no strain. Using default strain.
Warning: gnlti136478349 has no strain. Using default strain.
Warning: gnlti136478351 has no strain. Using default strain.
Warning: gnlti136478352 has no strain. Using default strain.
Warning: gnlti136478355 has no strain. Using default strain.
Warning: gnlti136478356 has no strain. Using default strain.
Warning: gnlti136478357 has no strain. Using default strain.
Warning: gnlti136478358 has no strain. Using default strain.
Warning: gnlti136478359 has no strain. Using default strain.
Warning: gnlti136478361 has no strain. Using default strain.
Warning: gnlti136478362 has no strain. Using default strain.
Warning: gnlti136478363 has no strain. Using default strain.
Warning: gnlti136478364 has no strain. Using default strain.
Warning: gnlti136478368 has no strain. Using default strain.
Warning: gnlti136478369 has no strain. Using default strain.
Warning: gnlti136478370 has no strain. Using default strain.
Warning: gnlti136478371 has no strain. Using default strain.
Warning: gnlti136478372 has no strain. Using default strain.
Warning: gnlti136478376 has no strain. Using default strain.
Warning: gnlti136478380 has no strain. Using default strain.
Warning: gnlti136478381 has no strain. Using default strain.
Warning: gnlti136478382 has no strain. Using default strain.
Warning: gnlti136478383 has no strain. Using default strain.
Warning: gnlti136478385 has no strain. Using default strain.
Warning: gnlti136478386 has no strain. Using default strain.
Warning: gnlti136478387 has no strain. Using default strain.
Warning: gnlti136478388 has no strain. Using default strain.
Warning: gnlti136478390 has no strain. Using default strain.
Warning: gnlti136478392 has no strain. Using default strain.
Warning: gnlti136478396 has no strain. Using default strain.
Warning: gnlti136478397 has no strain. Using default strain.
Warning: gnlti136478399 has no strain. Using default strain.
Warning: gnlti136478401 has no strain. Using default strain.
Warning: gnlti136478402 has no strain. Using default strain.
Warning: gnlti136478404 has no strain. Using default strain.
Warning: gnlti136478405 has no strain. Using default strain.
Warning: gnlti136478407 has no strain. Using default strain.
Warning: gnlti136478408 has no strain. Using default strain.
Warning: gnlti136478409 has no strain. Using default strain.
Warning: gnlti136478410 has no strain. Using default strain.
Warning: gnlti136478411 has no strain. Using default strain.
Warning: gnlti136478412 has no strain. Using default strain.
Warning: gnlti136478415 has no strain. Using default strain.
Warning: gnlti136478417 has no strain. Using default strain.
Warning: gnlti136478418 has no strain. Using default strain.
Warning: gnlti136478421 has no strain. Using default strain.
Warning: gnlti136478422 has no strain. Using default strain.
Warning: gnlti136478423 has no strain. Using default strain.
Warning: gnlti136478424 has no strain. Using default strain.
Warning: gnlti136478425 has no strain. Using default strain.
Warning: gnlti136478426 has no strain. Using default strain.
Warning: gnlti136478427 has no strain. Using default strain.
Warning: gnlti136478428 has no strain. Using default strain.
Warning: gnlti136478429 has no strain. Using default strain.
Warning: gnlti136478430 has no strain. Using default strain.
Warning: gnlti136478431 has no strain. Using default strain.
Warning: gnlti136478435 has no strain. Using default strain.
Warning: gnlti136478436 has no strain. Using default strain.
Warning: gnlti136478439 has no strain. Using default strain.
Warning: gnlti136478441 has no strain. Using default strain.
Warning: gnlti136478442 has no strain. Using default strain.
Warning: gnlti136478443 has no strain. Using default strain.
Warning: gnlti136478444 has no strain. Using default strain.
Warning: gnlti136478445 has no strain. Using default strain.
Warning: gnlti136478446 has no strain. Using default strain.
Warning: gnlti136478447 has no strain. Using default strain.
Warning: gnlti136478448 has no strain. Using default strain.
Warning: gnlti136478453 has no strain. Using default strain.
Warning: gnlti136478456 has no strain. Using default strain.
Warning: gnlti136478457 has no strain. Using default strain.
Warning: gnlti136478458 has no strain. Using default strain.
Warning: gnlti136478459 has no strain. Using default strain.
Warning: gnlti136478462 has no strain. Using default strain.
Warning: gnlti136478463 has no strain. Using default strain.
Warning: gnlti136478464 has no strain. Using default strain.
Warning: gnlti136478465 has no strain. Using default strain.
Warning: gnlti136478467 has no strain. Using default strain.
Warning: gnlti136478468 has no strain. Using default strain.
Warning: gnlti136478469 has no strain. Using default strain.
Warning: gnlti136478470 has no strain. Using default strain.
Warning: gnlti136478471 has no strain. Using default strain.
Warning: gnlti136478472 has no strain. Using default strain.
Warning: gnlti136478474 has no strain. Using default strain.
Warning: gnlti136478475 has no strain. Using default strain.
Warning: gnlti136478476 has no strain. Using default strain.
Warning: gnlti136478477 has no strain. Using default strain.
Warning: gnlti136478478 has no strain. Using default strain.
Warning: gnlti136478480 has no strain. Using default strain.
Warning: gnlti136478484 has no strain. Using default strain.
Warning: gnlti136478485 has no strain. Using default strain.
Warning: gnlti136478486 has no strain. Using default strain.
Warning: gnlti136478487 has no strain. Using default strain.
Warning: gnlti136478488 has no strain. Using default strain.
Warning: gnlti136478489 has no strain. Using default strain.
Warning: gnlti136478490 has no strain. Using default strain.
Warning: gnlti136478492 has no strain. Using default strain.
Warning: gnlti136478493 has no strain. Using default strain.
Warning: gnlti136478494 has no strain. Using default strain.
Warning: gnlti136478495 has no strain. Using default strain.
Warning: gnlti136478496 has no strain. Using default strain.
Warning: gnlti136478498 has no strain. Using default strain.
Warning: gnlti136478500 has no strain. Using default strain.
Warning: gnlti136478501 has no strain. Using default strain.
Warning: gnlti136478502 has no strain. Using default strain.
Warning: gnlti136478503 has no strain. Using default strain.
Warning: gnlti136478504 has no strain. Using default strain.
Warning: gnlti136478506 has no strain. Using default strain.
Warning: gnlti136478507 has no strain. Using default strain.
Warning: gnlti136478509 has no strain. Using default strain.
Warning: gnlti136478511 has no strain. Using default strain.
Warning: gnlti136478513 has no strain. Using default strain.
Warning: gnlti136478516 has no strain. Using default strain.
Warning: gnlti136478518 has no strain. Using default strain.
Warning: gnlti136478519 has no strain. Using default strain.
Warning: gnlti136478520 has no strain. Using default strain.
Warning: gnlti136478523 has no strain. Using default strain.
Warning: gnlti136478524 has no strain. Using default strain.
Warning: gnlti136478525 has no strain. Using default strain.
Warning: gnlti136478527 has no strain. Using default strain.
Warning: gnlti136478528 has no strain. Using default strain.
Warning: gnlti136478533 has no strain. Using default strain.
Warning: gnlti136478534 has no strain. Using default strain.
Warning: gnlti136478536 has no strain. Using default strain.
Warning: gnlti136478537 has no strain. Using default strain.
Warning: gnlti136478538 has no strain. Using default strain.
Warning: gnlti136478540 has no strain. Using default strain.
Warning: gnlti136478543 has no strain. Using default strain.
Warning: gnlti136478544 has no strain. Using default strain.
Warning: gnlti136478545 has no strain. Using default strain.
Warning: gnlti136478546 has no strain. Using default strain.
Warning: gnlti136478547 has no strain. Using default strain.
Warning: gnlti136478548 has no strain. Using default strain.
Warning: gnlti136478549 has no strain. Using default strain.
Warning: gnlti136478550 has no strain. Using default strain.
Warning: gnlti136478551 has no strain. Using default strain.
Warning: gnlti136478553 has no strain. Using default strain.
Warning: gnlti136478554 has no strain. Using default strain.
Warning: gnlti136478555 has no strain. Using default strain.
Warning: gnlti136478557 has no strain. Using default strain.
Warning: gnlti136478558 has no strain. Using default strain.
Warning: gnlti136478559 has no strain. Using default strain.
Warning: gnlti136478560 has no strain. Using default strain.
Warning: gnlti136478561 has no strain. Using default strain.
Warning: gnlti136478562 has no strain. Using default strain.
Warning: gnlti136478563 has no strain. Using default strain.
Warning: gnlti136478564 has no strain. Using default strain.
Warning: gnlti136478566 has no strain. Using default strain.
Warning: gnlti136478567 has no strain. Using default strain.
Warning: gnlti136478568 has no strain. Using default strain.
Warning: gnlti136478569 has no strain. Using default strain.
Warning: gnlti136478570 has no strain. Using default strain.
Warning: gnlti136478572 has no strain. Using default strain.
Warning: gnlti136478573 has no strain. Using default strain.
Warning: gnlti136478574 has no strain. Using default strain.
Warning: gnlti136478577 has no strain. Using default strain.
Warning: gnlti136478578 has no strain. Using default strain.
Warning: gnlti136478580 has no strain. Using default strain.
Warning: gnlti136478581 has no strain. Using default strain.
Warning: gnlti136478582 has no strain. Using default strain.
Warning: gnlti136478583 has no strain. Using default strain.
Warning: gnlti136478585 has no strain. Using default strain.
Warning: gnlti136478586 has no strain. Using default strain.
Warning: gnlti136478587 has no strain. Using default strain.
Warning: gnlti136478588 has no strain. Using default strain.
Warning: gnlti136478591 has no strain. Using default strain.
Warning: gnlti136478593 has no strain. Using default strain.
Warning: gnlti136478594 has no strain. Using default strain.
Warning: gnlti136478595 has no strain. Using default strain.
Warning: gnlti136478596 has no strain. Using default strain.
Warning: gnlti136478597 has no strain. Using default strain.
Warning: gnlti136478598 has no strain. Using default strain.
Warning: gnlti136478599 has no strain. Using default strain.
Warning: gnlti136478601 has no strain. Using default strain.
Warning: gnlti136478602 has no strain. Using default strain.
Warning: gnlti136478603 has no strain. Using default strain.
Warning: gnlti136478604 has no strain. Using default strain.
Warning: gnlti136478606 has no strain. Using default strain.
Warning: gnlti136478609 has no strain. Using default strain.
Warning: gnlti136478610 has no strain. Using default strain.
Warning: gnlti136478611 has no strain. Using default strain.
Warning: gnlti136478612 has no strain. Using default strain.
Warning: gnlti136478613 has no strain. Using default strain.
Warning: gnlti136478614 has no strain. Using default strain.
Warning: gnlti136478617 has no strain. Using default strain.
Warning: gnlti136478618 has no strain. Using default strain.
Warning: gnlti136478619 has no strain. Using default strain.
Warning: gnlti136478620 has no strain. Using default strain.
Warning: gnlti136478621 has no strain. Using default strain.
Warning: gnlti136478622 has no strain. Using default strain.
Warning: gnlti136478623 has no strain. Using default strain.
Warning: gnlti136478625 has no strain. Using default strain.
Warning: gnlti136478628 has no strain. Using default strain.
Warning: gnlti136478629 has no strain. Using default strain.
Warning: gnlti136478631 has no strain. Using default strain.
Warning: gnlti136478632 has no strain. Using default strain.
Warning: gnlti136478633 has no strain. Using default strain.
Warning: gnlti136478634 has no strain. Using default strain.
Warning: gnlti136478636 has no strain. Using default strain.
Warning: gnlti136478639 has no strain. Using default strain.
Warning: gnlti136478641 has no strain. Using default strain.
Warning: gnlti136478642 has no strain. Using default strain.
Warning: gnlti136478643 has no strain. Using default strain.
Warning: gnlti136478645 has no strain. Using default strain.
Warning: gnlti136478646 has no strain. Using default strain.
Warning: gnlti136478649 has no strain. Using default strain.
Warning: gnlti136478650 has no strain. Using default strain.
Warning: gnlti136478651 has no strain. Using default strain.
Warning: gnlti136478653 has no strain. Using default strain.
Warning: gnlti136478654 has no strain. Using default strain.
Warning: gnlti136478655 has no strain. Using default strain.
Warning: gnlti136478656 has no strain. Using default strain.
Warning: gnlti136478657 has no strain. Using default strain.
Warning: gnlti136478658 has no strain. Using default strain.
Warning: gnlti136478659 has no strain. Using default strain.
Warning: gnlti136478660 has no strain. Using default strain.
Warning: gnlti136478662 has no strain. Using default strain.
Warning: gnlti136478664 has no strain. Using default strain.
Warning: gnlti136478666 has no strain. Using default strain.
Warning: gnlti136478669 has no strain. Using default strain.
Warning: gnlti136478671 has no strain. Using default strain.
Warning: gnlti136478672 has no strain. Using default strain.
Warning: gnlti136478673 has no strain. Using default strain.
Warning: gnlti136478674 has no strain. Using default strain.
Warning: gnlti136478675 has no strain. Using default strain.
Warning: gnlti136478676 has no strain. Using default strain.
Warning: gnlti136478677 has no strain. Using default strain.
Warning: gnlti136478679 has no strain. Using default strain.
Warning: gnlti136478680 has no strain. Using default strain.
Warning: gnlti136478681 has no strain. Using default strain.
Warning: gnlti136478682 has no strain. Using default strain.
Warning: gnlti136478685 has no strain. Using default strain.
Warning: gnlti136478689 has no strain. Using default strain.
Warning: gnlti136478690 has no strain. Using default strain.
Warning: gnlti136478691 has no strain. Using default strain.
Warning: gnlti136478692 has no strain. Using default strain.
Warning: gnlti136478696 has no strain. Using default strain.
Warning: gnlti136478698 has no strain. Using default strain.
Warning: gnlti136478699 has no strain. Using default strain.
Warning: gnlti136478701 has no strain. Using default strain.
Warning: gnlti136478703 has no strain. Using default strain.
Warning: gnlti136478704 has no strain. Using default strain.
Warning: gnlti136478707 has no strain. Using default strain.
Warning: gnlti136478709 has no strain. Using default strain.
Warning: gnlti136478711 has no strain. Using default strain.
Warning: gnlti136478712 has no strain. Using default strain.
Warning: gnlti136478714 has no strain. Using default strain.
Warning: gnlti136478715 has no strain. Using default strain.
Warning: gnlti136478716 has no strain. Using default strain.
Warning: gnlti136478718 has no strain. Using default strain.
Warning: gnlti136478719 has no strain. Using default strain.
Warning: gnlti136478721 has no strain. Using default strain.
Warning: gnlti136478722 has no strain. Using default strain.
Warning: gnlti136478724 has no strain. Using default strain.
Warning: gnlti136478727 has no strain. Using default strain.
Warning: gnlti136478729 has no strain. Using default strain.
Warning: gnlti136478731 has no strain. Using default strain.
Warning: gnlti136478732 has no strain. Using default strain.
Warning: gnlti136478733 has no strain. Using default strain.
Warning: gnlti136478734 has no strain. Using default strain.
Warning: gnlti136478735 has no strain. Using default strain.
Warning: gnlti136478737 has no strain. Using default strain.
Warning: gnlti136478738 has no strain. Using default strain.
Warning: gnlti136478740 has no strain. Using default strain.
Warning: gnlti136478741 has no strain. Using default strain.
Warning: gnlti136478742 has no strain. Using default strain.
Warning: gnlti136478743 has no strain. Using default strain.
Warning: gnlti136478744 has no strain. Using default strain.
Warning: gnlti136478745 has no strain. Using default strain.
Warning: gnlti136478746 has no strain. Using default strain.
Warning: gnlti136478747 has no strain. Using default strain.
Warning: gnlti136478748 has no strain. Using default strain.
Warning: gnlti136478749 has no strain. Using default strain.
Warning: gnlti136478750 has no strain. Using default strain.
Warning: gnlti136478753 has no strain. Using default strain.
Warning: gnlti136478754 has no strain. Using default strain.
Warning: gnlti136478756 has no strain. Using default strain.
Warning: gnlti136478758 has no strain. Using default strain.
Warning: gnlti136478760 has no strain. Using default strain.
Warning: gnlti136478761 has no strain. Using default strain.
Warning: gnlti136478762 has no strain. Using default strain.
Warning: gnlti136478763 has no strain. Using default strain.
Warning: gnlti136478764 has no strain. Using default strain.
Warning: gnlti136478765 has no strain. Using default strain.
Warning: gnlti136478766 has no strain. Using default strain.
Warning: gnlti136478767 has no strain. Using default strain.
Warning: gnlti136478768 has no strain. Using default strain.
Warning: gnlti136478769 has no strain. Using default strain.
Warning: gnlti136478770 has no strain. Using default strain.
Warning: gnlti136478772 has no strain. Using default strain.
Warning: gnlti136478773 has no strain. Using default strain.
Warning: gnlti136478774 has no strain. Using default strain.
Warning: gnlti136478776 has no strain. Using default strain.
Warning: gnlti136478777 has no strain. Using default strain.
Warning: gnlti136478778 has no strain. Using default strain.
Warning: gnlti136478779 has no strain. Using default strain.
Warning: gnlti136478780 has no strain. Using default strain.
Warning: gnlti136478781 has no strain. Using default strain.
Warning: gnlti136478782 has no strain. Using default strain.
Warning: gnlti136478783 has no strain. Using default strain.
Warning: gnlti136478784 has no strain. Using default strain.
Warning: gnlti136478786 has no strain. Using default strain.
Warning: gnlti136478787 has no strain. Using default strain.
Warning: gnlti136478788 has no strain. Using default strain.
Warning: gnlti136478789 has no strain. Using default strain.
Warning: gnlti136478790 has no strain. Using default strain.
Warning: gnlti136478793 has no strain. Using default strain.
Warning: gnlti136478795 has no strain. Using default strain.
Warning: gnlti136478796 has no strain. Using default strain.
Warning: gnlti136478797 has no strain. Using default strain.
Warning: gnlti136478798 has no strain. Using default strain.
Warning: gnlti136478799 has no strain. Using default strain.
Warning: gnlti136478800 has no strain. Using default strain.
Warning: gnlti136478803 has no strain. Using default strain.
Warning: gnlti136478804 has no strain. Using default strain.
Warning: gnlti136478806 has no strain. Using default strain.
Warning: gnlti136478808 has no strain. Using default strain.
Warning: gnlti136478810 has no strain. Using default strain.
Warning: gnlti136478811 has no strain. Using default strain.
Warning: gnlti136478812 has no strain. Using default strain.
Warning: gnlti136478814 has no strain. Using default strain.
Warning: gnlti136478817 has no strain. Using default strain.
Warning: gnlti136478818 has no strain. Using default strain.
Warning: gnlti136478820 has no strain. Using default strain.
Warning: gnlti136478823 has no strain. Using default strain.
Warning: gnlti136478824 has no strain. Using default strain.
Warning: gnlti136478825 has no strain. Using default strain.
Warning: gnlti136478826 has no strain. Using default strain.
Warning: gnlti136478828 has no strain. Using default strain.
Warning: gnlti136478829 has no strain. Using default strain.
Warning: gnlti136478831 has no strain. Using default strain.
Warning: gnlti136478832 has no strain. Using default strain.
Warning: gnlti136478834 has no strain. Using default strain.
Warning: gnlti136478835 has no strain. Using default strain.
Warning: gnlti136478839 has no strain. Using default strain.
Warning: gnlti136478841 has no strain. Using default strain.
Warning: gnlti136478842 has no strain. Using default strain.
Warning: gnlti136478845 has no strain. Using default strain.
Warning: gnlti136478848 has no strain. Using default strain.
Warning: gnlti136478850 has no strain. Using default strain.
Warning: gnlti136478853 has no strain. Using default strain.
Warning: gnlti136478854 has no strain. Using default strain.
Warning: gnlti136478855 has no strain. Using default strain.
Warning: gnlti136478857 has no strain. Using default strain.
Warning: gnlti136478858 has no strain. Using default strain.
Warning: gnlti136478859 has no strain. Using default strain.
Warning: gnlti136478862 has no strain. Using default strain.
Warning: gnlti136478865 has no strain. Using default strain.
Warning: gnlti136478866 has no strain. Using default strain.
Warning: gnlti136478867 has no strain. Using default strain.
Warning: gnlti136478868 has no strain. Using default strain.
Warning: gnlti136478869 has no strain. Using default strain.
Warning: gnlti136478870 has no strain. Using default strain.
Warning: gnlti136478871 has no strain. Using default strain.
Warning: gnlti136478876 has no strain. Using default strain.
Warning: gnlti136478877 has no strain. Using default strain.
Warning: gnlti136478878 has no strain. Using default strain.
Warning: gnlti136478879 has no strain. Using default strain.
Warning: gnlti136478880 has no strain. Using default strain.
Warning: gnlti136478881 has no strain. Using default strain.
Warning: gnlti136478883 has no strain. Using default strain.
Warning: gnlti136478885 has no strain. Using default strain.
Warning: gnlti136478887 has no strain. Using default strain.
Warning: gnlti136478888 has no strain. Using default strain.
Warning: gnlti136478889 has no strain. Using default strain.
Warning: gnlti136478891 has no strain. Using default strain.
Warning: gnlti136478895 has no strain. Using default strain.
Warning: gnlti136478896 has no strain. Using default strain.
Warning: gnlti136478897 has no strain. Using default strain.
Warning: gnlti136478898 has no strain. Using default strain.
Warning: gnlti136478900 has no strain. Using default strain.
Warning: gnlti136478902 has no strain. Using default strain.
Warning: gnlti136478908 has no strain. Using default strain.
Warning: gnlti136478909 has no strain. Using default strain.
Warning: gnlti136478911 has no strain. Using default strain.
Warning: gnlti136478912 has no strain. Using default strain.
Warning: gnlti136478913 has no strain. Using default strain.
Warning: gnlti136478914 has no strain. Using default strain.
Warning: gnlti136478915 has no strain. Using default strain.
Warning: gnlti136478917 has no strain. Using default strain.
Warning: gnlti136478918 has no strain. Using default strain.
Warning: gnlti136478920 has no strain. Using default strain.
Warning: gnlti136478921 has no strain. Using default strain.
Warning: gnlti136478922 has no strain. Using default strain.
Warning: gnlti136478924 has no strain. Using default strain.
Warning: gnlti136478927 has no strain. Using default strain.
Warning: gnlti136478929 has no strain. Using default strain.
Warning: gnlti136478930 has no strain. Using default strain.
Warning: gnlti136478931 has no strain. Using default strain.
Warning: gnlti136478932 has no strain. Using default strain.
Warning: gnlti136478935 has no strain. Using default strain.
Warning: gnlti136478936 has no strain. Using default strain.
Warning: gnlti136478937 has no strain. Using default strain.
Warning: gnlti136478938 has no strain. Using default strain.
Warning: gnlti136478939 has no strain. Using default strain.
Warning: gnlti136478942 has no strain. Using default strain.
Warning: gnlti136478943 has no strain. Using default strain.
Warning: gnlti136478945 has no strain. Using default strain.
Warning: gnlti136478946 has no strain. Using default strain.
Warning: gnlti136478947 has no strain. Using default strain.
Warning: gnlti136478948 has no strain. Using default strain.
Warning: gnlti136478949 has no strain. Using default strain.
Warning: gnlti136478950 has no strain. Using default strain.
Warning: gnlti136478951 has no strain. Using default strain.
Warning: gnlti136478953 has no strain. Using default strain.
Warning: gnlti136478954 has no strain. Using default strain.
Warning: gnlti136478957 has no strain. Using default strain.
Warning: gnlti136478958 has no strain. Using default strain.
Warning: gnlti136478961 has no strain. Using default strain.
Warning: gnlti136478962 has no strain. Using default strain.
Warning: gnlti136478963 has no strain. Using default strain.
Warning: gnlti136478964 has no strain. Using default strain.
Warning: gnlti136478965 has no strain. Using default strain.
Warning: gnlti136478966 has no strain. Using default strain.
Warning: gnlti136478968 has no strain. Using default strain.
Warning: gnlti136478969 has no strain. Using default strain.
Warning: gnlti136478970 has no strain. Using default strain.
Warning: gnlti136478971 has no strain. Using default strain.
Warning: gnlti136478972 has no strain. Using default strain.
Warning: gnlti136478973 has no strain. Using default strain.
Warning: gnlti136478974 has no strain. Using default strain.
Warning: gnlti136478975 has no strain. Using default strain.
Warning: gnlti136478976 has no strain. Using default strain.
Warning: gnlti136478977 has no strain. Using default strain.
Warning: gnlti136478978 has no strain. Using default strain.
Warning: gnlti136478979 has no strain. Using default strain.
Warning: gnlti136478980 has no strain. Using default strain.
Warning: gnlti136478983 has no strain. Using default strain.
Warning: gnlti136478985 has no strain. Using default strain.
Warning: gnlti136478986 has no strain. Using default strain.
Warning: gnlti136478988 has no strain. Using default strain.
Warning: gnlti136478991 has no strain. Using default strain.
Warning: gnlti136478993 has no strain. Using default strain.
Warning: gnlti136478994 has no strain. Using default strain.
Warning: gnlti136478995 has no strain. Using default strain.
Warning: gnlti136478996 has no strain. Using default strain.
Warning: gnlti136478997 has no strain. Using default strain.
Warning: gnlti136478998 has no strain. Using default strain.
Warning: gnlti136478999 has no strain. Using default strain.
Warning: gnlti136479000 has no strain. Using default strain.
Warning: gnlti136479001 has no strain. Using default strain.
Warning: gnlti136479002 has no strain. Using default strain.
Warning: gnlti136479003 has no strain. Using default strain.
Warning: gnlti136479005 has no strain. Using default strain.
Warning: gnlti136479007 has no strain. Using default strain.
Warning: gnlti136479008 has no strain. Using default strain.
Warning: gnlti136479011 has no strain. Using default strain.
Warning: gnlti136479012 has no strain. Using default strain.
Warning: gnlti136479017 has no strain. Using default strain.
Warning: gnlti136479019 has no strain. Using default strain.
Warning: gnlti136479021 has no strain. Using default strain.
Warning: gnlti136479023 has no strain. Using default strain.
Warning: gnlti136479025 has no strain. Using default strain.
Warning: gnlti136479026 has no strain. Using default strain.
Warning: gnlti136479029 has no strain. Using default strain.
Warning: gnlti136479031 has no strain. Using default strain.
Warning: gnlti136479032 has no strain. Using default strain.
Warning: gnlti136479037 has no strain. Using default strain.
Warning: gnlti136479038 has no strain. Using default strain.
Warning: gnlti136479041 has no strain. Using default strain.
Warning: gnlti136479045 has no strain. Using default strain.
Warning: gnlti136479047 has no strain. Using default strain.
Warning: gnlti136479048 has no strain. Using default strain.
Warning: gnlti136479049 has no strain. Using default strain.
Warning: gnlti136479050 has no strain. Using default strain.
Warning: gnlti136479052 has no strain. Using default strain.
Warning: gnlti136479053 has no strain. Using default strain.
Warning: gnlti136479054 has no strain. Using default strain.
Warning: gnlti136479057 has no strain. Using default strain.
Warning: gnlti136479061 has no strain. Using default strain.
Warning: gnlti136479062 has no strain. Using default strain.
Warning: gnlti136479068 has no strain. Using default strain.
Warning: gnlti136479072 has no strain. Using default strain.
Warning: gnlti136479075 has no strain. Using default strain.
Warning: gnlti136479077 has no strain. Using default strain.
Warning: gnlti136479078 has no strain. Using default strain.
Warning: gnlti136479080 has no strain. Using default strain.
Warning: gnlti136479082 has no strain. Using default strain.
Warning: gnlti136479087 has no strain. Using default strain.
Warning: gnlti136479089 has no strain. Using default strain.
Warning: gnlti136479090 has no strain. Using default strain.
Warning: gnlti136479091 has no strain. Using default strain.
Warning: gnlti136479093 has no strain. Using default strain.
Warning: gnlti136479095 has no strain. Using default strain.
Warning: gnlti136479096 has no strain. Using default strain.
Warning: gnlti136479098 has no strain. Using default strain.
Warning: gnlti136479099 has no strain. Using default strain.
Warning: gnlti136479100 has no strain. Using default strain.
Warning: gnlti136479102 has no strain. Using default strain.
Warning: gnlti136479106 has no strain. Using default strain.
Warning: gnlti136479108 has no strain. Using default strain.
Warning: gnlti136479109 has no strain. Using default strain.
Warning: gnlti136479111 has no strain. Using default strain.
Warning: gnlti136479112 has no strain. Using default strain.
Warning: gnlti136479113 has no strain. Using default strain.
Warning: gnlti136479114 has no strain. Using default strain.
Warning: gnlti136479115 has no strain. Using default strain.
Warning: gnlti136479116 has no strain. Using default strain.
Warning: gnlti136479117 has no strain. Using default strain.
Warning: gnlti136479118 has no strain. Using default strain.
Warning: gnlti136479119 has no strain. Using default strain.
Warning: gnlti136479120 has no strain. Using default strain.
Warning: gnlti136479121 has no strain. Using default strain.
Warning: gnlti136479122 has no strain. Using default strain.
Warning: gnlti136479124 has no strain. Using default strain.
Warning: gnlti136479125 has no strain. Using default strain.
Warning: gnlti136479126 has no strain. Using default strain.
Warning: gnlti136479128 has no strain. Using default strain.
Warning: gnlti136479129 has no strain. Using default strain.
Warning: gnlti136479130 has no strain. Using default strain.
Warning: gnlti136479131 has no strain. Using default strain.
Warning: gnlti136479132 has no strain. Using default strain.
Warning: gnlti136479133 has no strain. Using default strain.
Warning: gnlti136479134 has no strain. Using default strain.
Warning: gnlti136479135 has no strain. Using default strain.
Warning: gnlti136479136 has no strain. Using default strain.
Warning: gnlti136479137 has no strain. Using default strain.
Warning: gnlti136479138 has no strain. Using default strain.
Warning: gnlti136479141 has no strain. Using default strain.
Warning: gnlti136479142 has no strain. Using default strain.
Warning: gnlti136479143 has no strain. Using default strain.
Warning: gnlti136479146 has no strain. Using default strain.
Warning: gnlti136479148 has no strain. Using default strain.
Warning: gnlti136479149 has no strain. Using default strain.
Warning: gnlti136479150 has no strain. Using default strain.
Warning: gnlti136479153 has no strain. Using default strain.
Warning: gnlti136479154 has no strain. Using default strain.
Warning: gnlti136479155 has no strain. Using default strain.
Warning: gnlti136479156 has no strain. Using default strain.
Warning: gnlti136479158 has no strain. Using default strain.
Warning: gnlti136479160 has no strain. Using default strain.
Warning: gnlti136479163 has no strain. Using default strain.
Warning: gnlti136479165 has no strain. Using default strain.
Warning: gnlti136479167 has no strain. Using default strain.
Warning: gnlti136479168 has no strain. Using default strain.
Warning: gnlti136479170 has no strain. Using default strain.
Warning: gnlti136479171 has no strain. Using default strain.
Warning: gnlti136479175 has no strain. Using default strain.
Warning: gnlti136479176 has no strain. Using default strain.
Warning: gnlti136479177 has no strain. Using default strain.
Warning: gnlti136479178 has no strain. Using default strain.
Warning: gnlti136479179 has no strain. Using default strain.
Warning: gnlti136479182 has no strain. Using default strain.
Warning: gnlti136479183 has no strain. Using default strain.
Warning: gnlti136479185 has no strain. Using default strain.
Warning: gnlti136479186 has no strain. Using default strain.
Warning: gnlti136479187 has no strain. Using default strain.
Warning: gnlti136479189 has no strain. Using default strain.
Warning: gnlti136479190 has no strain. Using default strain.
Warning: gnlti136479191 has no strain. Using default strain.
Warning: gnlti136479192 has no strain. Using default strain.
Warning: gnlti136479193 has no strain. Using default strain.
Warning: gnlti136479194 has no strain. Using default strain.
Warning: gnlti136479195 has no strain. Using default strain.
Warning: gnlti136479196 has no strain. Using default strain.
Warning: gnlti136479197 has no strain. Using default strain.
Warning: gnlti136479199 has no strain. Using default strain.
Warning: gnlti136479200 has no strain. Using default strain.
Warning: gnlti136479201 has no strain. Using default strain.
Warning: gnlti136479204 has no strain. Using default strain.
Warning: gnlti136479205 has no strain. Using default strain.
Warning: gnlti136479207 has no strain. Using default strain.
Warning: gnlti136479211 has no strain. Using default strain.
Warning: gnlti136479212 has no strain. Using default strain.
Warning: gnlti136479213 has no strain. Using default strain.
Warning: gnlti136479214 has no strain. Using default strain.
Warning: gnlti136479218 has no strain. Using default strain.
Warning: gnlti136479219 has no strain. Using default strain.
Warning: gnlti136479220 has no strain. Using default strain.
Warning: gnlti136479224 has no strain. Using default strain.
Warning: gnlti136479227 has no strain. Using default strain.
Warning: gnlti136479228 has no strain. Using default strain.
Warning: gnlti136479230 has no strain. Using default strain.
Warning: gnlti136479231 has no strain. Using default strain.
Warning: gnlti136479232 has no strain. Using default strain.
Warning: gnlti136479234 has no strain. Using default strain.
Warning: gnlti136479235 has no strain. Using default strain.
Warning: gnlti136479236 has no strain. Using default strain.
Warning: gnlti136479238 has no strain. Using default strain.
Warning: gnlti136479239 has no strain. Using default strain.
Warning: gnlti136479241 has no strain. Using default strain.
Warning: gnlti136479244 has no strain. Using default strain.
Warning: gnlti136479245 has no strain. Using default strain.
Warning: gnlti136479246 has no strain. Using default strain.
Warning: gnlti136479248 has no strain. Using default strain.
Warning: gnlti136479249 has no strain. Using default strain.
Warning: gnlti136479250 has no strain. Using default strain.
Warning: gnlti136479251 has no strain. Using default strain.
Warning: gnlti136479253 has no strain. Using default strain.
Warning: gnlti136479254 has no strain. Using default strain.
Warning: gnlti136479255 has no strain. Using default strain.
Warning: gnlti136479260 has no strain. Using default strain.
Warning: gnlti136479261 has no strain. Using default strain.
Warning: gnlti136479263 has no strain. Using default strain.
Warning: gnlti136479265 has no strain. Using default strain.
Warning: gnlti136479269 has no strain. Using default strain.
Warning: gnlti136479270 has no strain. Using default strain.
Warning: gnlti136479271 has no strain. Using default strain.
Warning: gnlti136479272 has no strain. Using default strain.
Warning: gnlti136479275 has no strain. Using default strain.
Warning: gnlti136479276 has no strain. Using default strain.
Warning: gnlti136479277 has no strain. Using default strain.
Warning: gnlti136479279 has no strain. Using default strain.
Warning: gnlti136479281 has no strain. Using default strain.
Warning: gnlti136479282 has no strain. Using default strain.
Warning: gnlti136479283 has no strain. Using default strain.
Warning: gnlti136479284 has no strain. Using default strain.
Warning: gnlti136479288 has no strain. Using default strain.
Warning: gnlti136479289 has no strain. Using default strain.
Warning: gnlti136479290 has no strain. Using default strain.
Warning: gnlti136479292 has no strain. Using default strain.
Warning: gnlti136479294 has no strain. Using default strain.
Warning: gnlti136479299 has no strain. Using default strain.
Warning: gnlti136479300 has no strain. Using default strain.
Warning: gnlti136479301 has no strain. Using default strain.
Warning: gnlti136479303 has no strain. Using default strain.
Warning: gnlti136479305 has no strain. Using default strain.
Warning: gnlti136479306 has no strain. Using default strain.
Warning: gnlti136479308 has no strain. Using default strain.
Warning: gnlti136479310 has no strain. Using default strain.
Warning: gnlti136479311 has no strain. Using default strain.
Warning: gnlti136479312 has no strain. Using default strain.
Warning: gnlti136479313 has no strain. Using default strain.
Warning: gnlti136479314 has no strain. Using default strain.
Warning: gnlti136479315 has no strain. Using default strain.
Warning: gnlti136479316 has no strain. Using default strain.
Warning: gnlti136479317 has no strain. Using default strain.
Warning: gnlti136479319 has no strain. Using default strain.
Warning: gnlti136479320 has no strain. Using default strain.
Warning: gnlti136479321 has no strain. Using default strain.
Warning: gnlti136479323 has no strain. Using default strain.
Warning: gnlti136479324 has no strain. Using default strain.
Warning: gnlti136479325 has no strain. Using default strain.
Warning: gnlti136479326 has no strain. Using default strain.
Warning: gnlti136479327 has no strain. Using default strain.
Warning: gnlti136479328 has no strain. Using default strain.
Warning: gnlti136479329 has no strain. Using default strain.
Warning: gnlti136479330 has no strain. Using default strain.
Warning: gnlti136479331 has no strain. Using default strain.
Warning: gnlti136479333 has no strain. Using default strain.
Warning: gnlti136479334 has no strain. Using default strain.
Warning: gnlti136479335 has no strain. Using default strain.
Warning: gnlti136479337 has no strain. Using default strain.
Warning: gnlti136479338 has no strain. Using default strain.
Warning: gnlti136479339 has no strain. Using default strain.
Warning: gnlti136479340 has no strain. Using default strain.
Warning: gnlti136479341 has no strain. Using default strain.
Warning: gnlti136479347 has no strain. Using default strain.
Warning: gnlti136479349 has no strain. Using default strain.
Warning: gnlti136479350 has no strain. Using default strain.
Warning: gnlti136479351 has no strain. Using default strain.
Warning: gnlti136479352 has no strain. Using default strain.
Warning: gnlti136479355 has no strain. Using default strain.
Warning: gnlti136479358 has no strain. Using default strain.
Warning: gnlti136479359 has no strain. Using default strain.
Warning: gnlti136479360 has no strain. Using default strain.
Warning: gnlti136479361 has no strain. Using default strain.
Warning: gnlti136479362 has no strain. Using default strain.
Warning: gnlti136479364 has no strain. Using default strain.
Warning: gnlti136479366 has no strain. Using default strain.
Warning: gnlti136479367 has no strain. Using default strain.
Warning: gnlti136479368 has no strain. Using default strain.
Warning: gnlti136479370 has no strain. Using default strain.
Warning: gnlti136479371 has no strain. Using default strain.
Warning: gnlti136479373 has no strain. Using default strain.
Warning: gnlti136479374 has no strain. Using default strain.
Warning: gnlti136479375 has no strain. Using default strain.
Warning: gnlti136479377 has no strain. Using default strain.
Warning: gnlti136479378 has no strain. Using default strain.
Warning: gnlti136479380 has no strain. Using default strain.
Warning: gnlti136479381 has no strain. Using default strain.
Warning: gnlti136479382 has no strain. Using default strain.
Warning: gnlti136479383 has no strain. Using default strain.
Warning: gnlti136479384 has no strain. Using default strain.
Warning: gnlti136479385 has no strain. Using default strain.
Warning: gnlti136479390 has no strain. Using default strain.
Warning: gnlti136479392 has no strain. Using default strain.
Warning: gnlti136479393 has no strain. Using default strain.
Warning: gnlti136479395 has no strain. Using default strain.
Warning: gnlti136479396 has no strain. Using default strain.
Warning: gnlti136479397 has no strain. Using default strain.
Warning: gnlti136479398 has no strain. Using default strain.
Warning: gnlti136479399 has no strain. Using default strain.
Warning: gnlti136479401 has no strain. Using default strain.
Warning: gnlti136479403 has no strain. Using default strain.
Warning: gnlti136479404 has no strain. Using default strain.
Warning: gnlti136479405 has no strain. Using default strain.
Warning: gnlti136479408 has no strain. Using default strain.
Warning: gnlti136479412 has no strain. Using default strain.
Warning: gnlti136479415 has no strain. Using default strain.
Warning: gnlti136479416 has no strain. Using default strain.
Warning: gnlti136479417 has no strain. Using default strain.
Warning: gnlti136479418 has no strain. Using default strain.
Warning: gnlti136479419 has no strain. Using default strain.
Warning: gnlti136479422 has no strain. Using default strain.
Warning: gnlti136479423 has no strain. Using default strain.
Warning: gnlti136479424 has no strain. Using default strain.
Warning: gnlti136479426 has no strain. Using default strain.
Warning: gnlti136479430 has no strain. Using default strain.
Warning: gnlti136479431 has no strain. Using default strain.
Warning: gnlti136479432 has no strain. Using default strain.
Warning: gnlti136479433 has no strain. Using default strain.
Warning: gnlti136479434 has no strain. Using default strain.
Warning: gnlti136479438 has no strain. Using default strain.
Warning: gnlti136479439 has no strain. Using default strain.
Warning: gnlti136479440 has no strain. Using default strain.
Warning: gnlti136479442 has no strain. Using default strain.
Warning: gnlti136479443 has no strain. Using default strain.
Warning: gnlti136479445 has no strain. Using default strain.
Warning: gnlti136479446 has no strain. Using default strain.
Warning: gnlti136479448 has no strain. Using default strain.
Warning: gnlti136479449 has no strain. Using default strain.
Warning: gnlti136479450 has no strain. Using default strain.
Warning: gnlti136479451 has no strain. Using default strain.
Warning: gnlti136479452 has no strain. Using default strain.
Warning: gnlti136479453 has no strain. Using default strain.
Warning: gnlti136479454 has no strain. Using default strain.
Warning: gnlti136479456 has no strain. Using default strain.
Warning: gnlti136479457 has no strain. Using default strain.
Warning: gnlti136479458 has no strain. Using default strain.
Warning: gnlti136479461 has no strain. Using default strain.
Warning: gnlti136479462 has no strain. Using default strain.
Warning: gnlti136479464 has no strain. Using default strain.
Warning: gnlti136479465 has no strain. Using default strain.
Warning: gnlti136479468 has no strain. Using default strain.
Warning: gnlti136479469 has no strain. Using default strain.
Warning: gnlti136479472 has no strain. Using default strain.
Warning: gnlti136479473 has no strain. Using default strain.
Warning: gnlti136479474 has no strain. Using default strain.
Warning: gnlti136479475 has no strain. Using default strain.
Warning: gnlti136479477 has no strain. Using default strain.
Warning: gnlti136479481 has no strain. Using default strain.
Warning: gnlti136479482 has no strain. Using default strain.
Warning: gnlti136479483 has no strain. Using default strain.
Warning: gnlti136479484 has no strain. Using default strain.
Warning: gnlti136479485 has no strain. Using default strain.
Warning: gnlti136479486 has no strain. Using default strain.
Warning: gnlti136479487 has no strain. Using default strain.
Warning: gnlti136479488 has no strain. Using default strain.
Warning: gnlti136479491 has no strain. Using default strain.
Warning: gnlti136479493 has no strain. Using default strain.
Warning: gnlti136479494 has no strain. Using default strain.
Warning: gnlti136479496 has no strain. Using default strain.
Warning: gnlti136479497 has no strain. Using default strain.
Warning: gnlti136479498 has no strain. Using default strain.
Warning: gnlti136479502 has no strain. Using default strain.
Warning: gnlti136479503 has no strain. Using default strain.
Warning: gnlti136479504 has no strain. Using default strain.
Warning: gnlti136479505 has no strain. Using default strain.
Warning: gnlti136479508 has no strain. Using default strain.
Warning: gnlti136479512 has no strain. Using default strain.
Warning: gnlti136479513 has no strain. Using default strain.
Warning: gnlti136479516 has no strain. Using default strain.
Warning: gnlti136479517 has no strain. Using default strain.
Warning: gnlti136479519 has no strain. Using default strain.
Warning: gnlti136479521 has no strain. Using default strain.
Warning: gnlti136479524 has no strain. Using default strain.
Warning: gnlti136479527 has no strain. Using default strain.
Warning: gnlti136479528 has no strain. Using default strain.
Warning: gnlti136479529 has no strain. Using default strain.
Warning: gnlti136479531 has no strain. Using default strain.
Warning: gnlti136479533 has no strain. Using default strain.
Warning: gnlti136479534 has no strain. Using default strain.
Warning: gnlti136479538 has no strain. Using default strain.
Warning: gnlti136479541 has no strain. Using default strain.
Warning: gnlti136479543 has no strain. Using default strain.
Warning: gnlti136479544 has no strain. Using default strain.
Warning: gnlti136479546 has no strain. Using default strain.
Warning: gnlti136479549 has no strain. Using default strain.
Warning: gnlti136479550 has no strain. Using default strain.
Warning: gnlti136479554 has no strain. Using default strain.
Warning: gnlti136479555 has no strain. Using default strain.
Warning: gnlti136479556 has no strain. Using default strain.
Warning: gnlti136479557 has no strain. Using default strain.
Warning: gnlti136479558 has no strain. Using default strain.
Warning: gnlti136479559 has no strain. Using default strain.
Warning: gnlti136479560 has no strain. Using default strain.
Warning: gnlti136479561 has no strain. Using default strain.
Warning: gnlti136479562 has no strain. Using default strain.
Warning: gnlti136479563 has no strain. Using default strain.
Warning: gnlti136479564 has no strain. Using default strain.
Warning: gnlti136479567 has no strain. Using default strain.
Warning: gnlti136479569 has no strain. Using default strain.
Warning: gnlti136479570 has no strain. Using default strain.
Warning: gnlti136479571 has no strain. Using default strain.
Warning: gnlti136479572 has no strain. Using default strain.
Warning: gnlti136479575 has no strain. Using default strain.
Warning: gnlti136479577 has no strain. Using default strain.
Warning: gnlti136479578 has no strain. Using default strain.
Warning: gnlti136479579 has no strain. Using default strain.
Warning: gnlti136479580 has no strain. Using default strain.
Warning: gnlti136479581 has no strain. Using default strain.
Warning: gnlti136479582 has no strain. Using default strain.
Warning: gnlti136479583 has no strain. Using default strain.
Warning: gnlti136479584 has no strain. Using default strain.
Warning: gnlti136479585 has no strain. Using default strain.
Warning: gnlti136479586 has no strain. Using default strain.
Warning: gnlti136479589 has no strain. Using default strain.
Warning: gnlti136479590 has no strain. Using default strain.
Warning: gnlti136479592 has no strain. Using default strain.
Warning: gnlti136479596 has no strain. Using default strain.
Warning: gnlti136479597 has no strain. Using default strain.
Warning: gnlti136479598 has no strain. Using default strain.
Warning: gnlti136479599 has no strain. Using default strain.
Warning: gnlti136479600 has no strain. Using default strain.
Warning: gnlti136479602 has no strain. Using default strain.
Warning: gnlti136479603 has no strain. Using default strain.
Warning: gnlti136479604 has no strain. Using default strain.
Warning: gnlti136479605 has no strain. Using default strain.
Warning: gnlti136479606 has no strain. Using default strain.
Warning: gnlti136479607 has no strain. Using default strain.
Warning: gnlti136479608 has no strain. Using default strain.
Warning: gnlti136479610 has no strain. Using default strain.
Warning: gnlti136479611 has no strain. Using default strain.
Warning: gnlti136479612 has no strain. Using default strain.
Warning: gnlti136479613 has no strain. Using default strain.
Warning: gnlti136479615 has no strain. Using default strain.
Warning: gnlti136479616 has no strain. Using default strain.
Warning: gnlti136479617 has no strain. Using default strain.
Warning: gnlti136479618 has no strain. Using default strain.
Warning: gnlti136479619 has no strain. Using default strain.
Warning: gnlti136479620 has no strain. Using default strain.
Warning: gnlti136479622 has no strain. Using default strain.
Warning: gnlti136479623 has no strain. Using default strain.
Warning: gnlti136479624 has no strain. Using default strain.
Warning: gnlti136479625 has no strain. Using default strain.
Warning: gnlti136479628 has no strain. Using default strain.
Warning: gnlti136479632 has no strain. Using default strain.
Warning: gnlti136479634 has no strain. Using default strain.
Warning: gnlti136479635 has no strain. Using default strain.
Warning: gnlti136479638 has no strain. Using default strain.
Warning: gnlti136479639 has no strain. Using default strain.
Warning: gnlti136479640 has no strain. Using default strain.
Warning: gnlti136479641 has no strain. Using default strain.
Warning: gnlti136479647 has no strain. Using default strain.
Warning: gnlti136479649 has no strain. Using default strain.
Warning: gnlti136479650 has no strain. Using default strain.
Warning: gnlti136479652 has no strain. Using default strain.
Warning: gnlti136479653 has no strain. Using default strain.
Warning: gnlti136479654 has no strain. Using default strain.
Warning: gnlti136479655 has no strain. Using default strain.
Warning: gnlti136479656 has no strain. Using default strain.
Warning: gnlti136479657 has no strain. Using default strain.
Warning: gnlti136479660 has no strain. Using default strain.
Warning: gnlti136479661 has no strain. Using default strain.
Warning: gnlti136479662 has no strain. Using default strain.
Warning: gnlti136479663 has no strain. Using default strain.
Warning: gnlti136479664 has no strain. Using default strain.
Warning: gnlti136479665 has no strain. Using default strain.
Warning: gnlti136479667 has no strain. Using default strain.
Warning: gnlti136479668 has no strain. Using default strain.
Warning: gnlti136479670 has no strain. Using default strain.
Warning: gnlti136479672 has no strain. Using default strain.
Warning: gnlti136479673 has no strain. Using default strain.
Warning: gnlti136479674 has no strain. Using default strain.
Warning: gnlti136479675 has no strain. Using default strain.
Warning: gnlti136479676 has no strain. Using default strain.
Warning: gnlti136479678 has no strain. Using default strain.
Warning: gnlti136479681 has no strain. Using default strain.
Warning: gnlti136479682 has no strain. Using default strain.
Warning: gnlti136479683 has no strain. Using default strain.
Warning: gnlti136479684 has no strain. Using default strain.
Warning: gnlti136479685 has no strain. Using default strain.
Warning: gnlti136479686 has no strain. Using default strain.
Warning: gnlti136479687 has no strain. Using default strain.
Warning: gnlti136479688 has no strain. Using default strain.
Warning: gnlti136479689 has no strain. Using default strain.
Warning: gnlti136479690 has no strain. Using default strain.
Warning: gnlti136479691 has no strain. Using default strain.
Warning: gnlti136479694 has no strain. Using default strain.
Warning: gnlti136479696 has no strain. Using default strain.
Warning: gnlti136479697 has no strain. Using default strain.
Warning: gnlti136479700 has no strain. Using default strain.
Warning: gnlti136479703 has no strain. Using default strain.
Warning: gnlti136479704 has no strain. Using default strain.
Warning: gnlti136479706 has no strain. Using default strain.
Warning: gnlti136479707 has no strain. Using default strain.
Warning: gnlti136479709 has no strain. Using default strain.
Warning: gnlti136479710 has no strain. Using default strain.
Warning: gnlti136479711 has no strain. Using default strain.
Warning: gnlti136479712 has no strain. Using default strain.
Warning: gnlti136479713 has no strain. Using default strain.
Warning: gnlti136479714 has no strain. Using default strain.
Warning: gnlti136479715 has no strain. Using default strain.
Warning: gnlti136479717 has no strain. Using default strain.
Warning: gnlti136479718 has no strain. Using default strain.
Warning: gnlti136479719 has no strain. Using default strain.
Warning: gnlti136479720 has no strain. Using default strain.
Warning: gnlti136479722 has no strain. Using default strain.
Warning: gnlti136479727 has no strain. Using default strain.
Warning: gnlti136479728 has no strain. Using default strain.
Warning: gnlti136479732 has no strain. Using default strain.
Warning: gnlti136479735 has no strain. Using default strain.
Warning: gnlti136479736 has no strain. Using default strain.
Warning: gnlti136479737 has no strain. Using default strain.
Warning: gnlti136479738 has no strain. Using default strain.
Warning: gnlti136479739 has no strain. Using default strain.
Warning: gnlti136479740 has no strain. Using default strain.
Warning: gnlti136479741 has no strain. Using default strain.
Warning: gnlti136479743 has no strain. Using default strain.
Warning: gnlti136479744 has no strain. Using default strain.
Warning: gnlti136479745 has no strain. Using default strain.
Warning: gnlti136479746 has no strain. Using default strain.
Warning: gnlti136479747 has no strain. Using default strain.
Warning: gnlti136479749 has no strain. Using default strain.
Warning: gnlti136479750 has no strain. Using default strain.
Warning: gnlti136479752 has no strain. Using default strain.
Warning: gnlti136479753 has no strain. Using default strain.
Warning: gnlti136479754 has no strain. Using default strain.
Warning: gnlti136479755 has no strain. Using default strain.
Warning: gnlti136479756 has no strain. Using default strain.
Warning: gnlti136479758 has no strain. Using default strain.
Warning: gnlti136479759 has no strain. Using default strain.
Warning: gnlti136479761 has no strain. Using default strain.
Warning: gnlti136479762 has no strain. Using default strain.
Warning: gnlti136479763 has no strain. Using default strain.
Warning: gnlti136479765 has no strain. Using default strain.
Warning: gnlti136479767 has no strain. Using default strain.
Warning: gnlti136479768 has no strain. Using default strain.
Warning: gnlti136479770 has no strain. Using default strain.
Warning: gnlti136479773 has no strain. Using default strain.
Warning: gnlti136479774 has no strain. Using default strain.
Warning: gnlti136479776 has no strain. Using default strain.
Warning: gnlti136479780 has no strain. Using default strain.
Warning: gnlti136479782 has no strain. Using default strain.
Warning: gnlti136479785 has no strain. Using default strain.
Warning: gnlti136479786 has no strain. Using default strain.
Warning: gnlti136479787 has no strain. Using default strain.
Warning: gnlti136479789 has no strain. Using default strain.
Warning: gnlti136479790 has no strain. Using default strain.
Warning: gnlti136479794 has no strain. Using default strain.
Warning: gnlti136479795 has no strain. Using default strain.
Warning: gnlti136479799 has no strain. Using default strain.
Warning: gnlti136479800 has no strain. Using default strain.
Warning: gnlti136479802 has no strain. Using default strain.
Warning: gnlti136479803 has no strain. Using default strain.
Warning: gnlti136479804 has no strain. Using default strain.
Warning: gnlti136479805 has no strain. Using default strain.
Warning: gnlti136479806 has no strain. Using default strain.
Warning: gnlti136479807 has no strain. Using default strain.
Warning: gnlti136479808 has no strain. Using default strain.
Warning: gnlti136479809 has no strain. Using default strain.
Warning: gnlti136479812 has no strain. Using default strain.
Warning: gnlti136479813 has no strain. Using default strain.
Warning: gnlti136479814 has no strain. Using default strain.
Warning: gnlti136479816 has no strain. Using default strain.
Warning: gnlti136479817 has no strain. Using default strain.
Warning: gnlti136479822 has no strain. Using default strain.
Warning: gnlti136479824 has no strain. Using default strain.
Warning: gnlti136479825 has no strain. Using default strain.
Warning: gnlti136479826 has no strain. Using default strain.
Warning: gnlti136479830 has no strain. Using default strain.
Warning: gnlti136479832 has no strain. Using default strain.
Warning: gnlti136479834 has no strain. Using default strain.
Warning: gnlti136479835 has no strain. Using default strain.
Warning: gnlti136479836 has no strain. Using default strain.
Warning: gnlti136479839 has no strain. Using default strain.
Warning: gnlti136479840 has no strain. Using default strain.
Warning: gnlti136479841 has no strain. Using default strain.
Warning: gnlti136479843 has no strain. Using default strain.
Warning: gnlti136479844 has no strain. Using default strain.
Warning: gnlti136479847 has no strain. Using default strain.
Warning: gnlti136479852 has no strain. Using default strain.
Warning: gnlti136479855 has no strain. Using default strain.
Warning: gnlti136479856 has no strain. Using default strain.
Warning: gnlti136479857 has no strain. Using default strain.
Warning: gnlti136479858 has no strain. Using default strain.
Warning: gnlti136479859 has no strain. Using default strain.
Warning: gnlti136479861 has no strain. Using default strain.
Warning: gnlti136479863 has no strain. Using default strain.
Warning: gnlti136479864 has no strain. Using default strain.
Warning: gnlti136479866 has no strain. Using default strain.
Warning: gnlti136479867 has no strain. Using default strain.
Warning: gnlti136479868 has no strain. Using default strain.
Warning: gnlti136479869 has no strain. Using default strain.
Warning: gnlti136479870 has no strain. Using default strain.
Warning: gnlti136479871 has no strain. Using default strain.
Warning: gnlti136479872 has no strain. Using default strain.
Warning: gnlti136479874 has no strain. Using default strain.
Warning: gnlti136479875 has no strain. Using default strain.
Warning: gnlti136479876 has no strain. Using default strain.
Warning: gnlti136479877 has no strain. Using default strain.
Warning: gnlti136479878 has no strain. Using default strain.
Warning: gnlti136479879 has no strain. Using default strain.
Warning: gnlti136479881 has no strain. Using default strain.
Warning: gnlti136479883 has no strain. Using default strain.
Warning: gnlti136479885 has no strain. Using default strain.
Warning: gnlti136479886 has no strain. Using default strain.
Warning: gnlti136479887 has no strain. Using default strain.
Warning: gnlti136479888 has no strain. Using default strain.
Warning: gnlti136479889 has no strain. Using default strain.


Starting minimum left vector clip ... done.
Pool has 1595 reads .
Checking reads for trace data:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
No SCF data present in any read, automatic contig editing is now switched off.
1595 reads with valid data for assembly.

For the reads that are neither backbones nor rails:
- 550 reads have not enough good bases for assembly.
- 1045 reads used for assembly.
- 0 reads have no real quality (see miralog.noqualities).
- mean length of good parts of used reads: 393
Localtime: Thu Jul 15 12:00:00 2010

Generated 1595 unique template ids for 1595 valid reads.
No useful template information found, template routines will not be used.
Localtime: Thu Jul 15 12:00:00 2010

Generated 0 unique strain ids for 1595 reads.

Localtime: Thu Jul 15 12:00:00 2010


Searching for possible overlaps:
Localtime: Thu Jul 15 12:00:00 2010
We will get 1 partitions.
Progressend: 3190
Now running partitioned skimmer with 1 partitions:

Working on partition 1/1
Will contain read IDs 0 to 1594
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
Total megahubs: 0

Skim summary:
	accepted: 718
	possible: 171169
	permbans: 0

Hits chosen: 718

Localtime: Thu Jul 15 12:00:00 2010

Pre-assembly alignment search for read extension and / or vector clipping:
Making alignments.
Localtime: Thu Jul 15 12:00:00 2010

Aligning possible forward matches:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
Localtime: Thu Jul 15 12:00:00 2010

Aligning possible complement matches:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
Localtime: Thu Jul 15 12:00:00 2010

Calculating possible vector leftovers ... done.

Loading confirmed overlaps from disk (will need approximately 1 M.):
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 

Sorting confirmed overlaps (this may take a while) ... done.

Generating clusters:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 

Pre-assembly vector clipping

Performing vector clipping ... done.
Pool has 1595 reads .
Checking reads for trace data:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
No SCF data present in any read, automatic contig editing is now switched off.
1595 reads with valid data for assembly.

For the reads that are neither backbones nor rails:
- 550 reads have not enough good bases for assembly.
- 1045 reads used for assembly.
- 0 reads have no real quality (see miralog.noqualities).
- mean length of good parts of used reads: 393
Localtime: Thu Jul 15 12:00:00 2010

Generated 1595 unique template ids for 1595 valid reads.
No useful template information found, template routines will not be used.
Localtime: Thu Jul 15 12:00:00 2010

Generated 0 unique strain ids for 1595 reads.

Localtime: Thu Jul 15 12:00:00 2010


Searching for possible overlaps:
Localtime: Thu Jul 15 12:00:00 2010
We will get 1 partitions.
Progressend: 3190
Now running partitioned skimmer with 1 partitions:

Working on partition 1/1
Will contain read IDs 0 to 1594
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
Total megahubs: 0

Skim summary:
	accepted: 718
	possible: 171169
	permbans: 0

Hits chosen: 718

Localtime: Thu Jul 15 12:00:00 2010



Pass: 1
Making alignments.
Localtime: Thu Jul 15 12:00:00 2010

Aligning possible forward matches:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
Localtime: Thu Jul 15 12:00:00 2010

Aligning possible complement matches:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
Localtime: Thu Jul 15 12:00:00 2010

Calculating possible vector leftovers ... done.

Loading confirmed overlaps from disk (will need approximately 1 M.):
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 

Sorting confirmed overlaps (this may take a while) ... done.

Generating clusters:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 

Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1045
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1
Contig length: 371
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 88	G: 75	T: 106	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 371
Reads contain 370 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 2
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1044
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 2
Contig length: 436
Avg. contig coverage: 1
Consensus contains:	A: 148	C: 96	G: 59	T: 133	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 436
Reads contain 436 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 3
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1043
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 3
Contig length: 475
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 119	G: 85	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 475
Reads contain 475 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 4
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1042
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 4
Contig length: 318
Avg. contig coverage: 1
Consensus contains:	A: 67	C: 90	G: 80	T: 81	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 318
Reads contain 318 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 5
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1041
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 5
Contig length: 340
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 94	G: 66	T: 97	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 340
Reads contain 339 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 6
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1040
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 6
Contig length: 530
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 108	G: 140	T: 150	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 530
Reads contain 530 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 7
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1039
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 7
Contig length: 348
Avg. contig coverage: 1
Consensus contains:	A: 129	C: 71	G: 68	T: 80	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 348
Reads contain 348 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 8
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1038
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 8
Contig length: 142
Avg. contig coverage: 1
Consensus contains:	A: 37	C: 24	G: 32	T: 49	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 142
Reads contain 142 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 9
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1037
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 9
Contig length: 512
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 139	G: 95	T: 176	N: 3
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 512
Reads contain 509 bases, 3 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 10
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1036
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 10
Contig length: 474
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 127	G: 129	T: 113	N: 4
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 474
Reads contain 470 bases, 4 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 11
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1035
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 11
Contig length: 284
Avg. contig coverage: 1
Consensus contains:	A: 68	C: 70	G: 67	T: 77	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 284
Reads contain 282 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 12
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1034
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 12
Contig length: 551
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 118	G: 136	T: 134	N: 7
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 551
Reads contain 544 bases, 7 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 13
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1033
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 13
Contig length: 394
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 100	G: 66	T: 124	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 394
Reads contain 393 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 14
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1032
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 14
Contig length: 362
Avg. contig coverage: 1
Consensus contains:	A: 92	C: 88	G: 68	T: 114	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 362
Reads contain 362 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 15
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1031
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 15
Contig length: 465
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 140	G: 97	T: 121	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 465
Reads contain 464 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 16
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1030
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 16
Contig length: 265
Avg. contig coverage: 1
Consensus contains:	A: 81	C: 46	G: 64	T: 73	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 265
Reads contain 264 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 17
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1029
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 17
Contig length: 503
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 116	G: 114	T: 148	N: 3
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 503
Reads contain 500 bases, 3 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 18
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1028
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 18
Contig length: 412
Avg. contig coverage: 1
Consensus contains:	A: 152	C: 98	G: 70	T: 92	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 412
Reads contain 412 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 19
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1027
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 19
Contig length: 275
Avg. contig coverage: 1
Consensus contains:	A: 61	C: 60	G: 53	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 275
Reads contain 275 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 20
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1026
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 20
Contig length: 317
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 50	G: 79	T: 98	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 317
Reads contain 317 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 21
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1025
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 21
Contig length: 592
Avg. contig coverage: 1
Consensus contains:	A: 161	C: 138	G: 126	T: 162	N: 5
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 592
Reads contain 587 bases, 5 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 22
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1024
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 22
Contig length: 310
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 55	G: 35	T: 97	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 310
Reads contain 309 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 23
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1023
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 23
Contig length: 558
Avg. contig coverage: 1
Consensus contains:	A: 155	C: 139	G: 101	T: 163	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 558
Reads contain 558 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 24
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1022
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 24
Contig length: 461
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 98	G: 118	T: 131	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 461
Reads contain 461 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 25
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1021
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 25
Contig length: 508
Avg. contig coverage: 1
Consensus contains:	A: 140	C: 109	G: 134	T: 124	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 508
Reads contain 507 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 26
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1020
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 26
Contig length: 585
Avg. contig coverage: 1
Consensus contains:	A: 167	C: 162	G: 94	T: 159	N: 3
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 585
Reads contain 582 bases, 3 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 27
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1019
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 27
Contig length: 355
Avg. contig coverage: 1
Consensus contains:	A: 95	C: 92	G: 67	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 355
Reads contain 355 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 28
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1018
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 28
Contig length: 299
Avg. contig coverage: 1
Consensus contains:	A: 56	C: 67	G: 50	T: 125	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 299
Reads contain 298 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 29
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1017
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 29
Contig length: 453
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 100	G: 120	T: 108	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 453
Reads contain 452 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 30
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1016
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 30
Contig length: 530
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 124	G: 160	T: 116	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 530
Reads contain 528 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 31
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1015
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 31
Contig length: 477
Avg. contig coverage: 1
Consensus contains:	A: 140	C: 137	G: 99	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 477
Reads contain 477 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 32
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1014
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 32
Contig length: 577
Avg. contig coverage: 1
Consensus contains:	A: 159	C: 159	G: 127	T: 131	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 577
Reads contain 576 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 33
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1013
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 33
Contig length: 446
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 89	G: 85	T: 128	N: 3
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 446
Reads contain 443 bases, 3 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 34
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1012
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 34
Contig length: 243
Avg. contig coverage: 1
Consensus contains:	A: 59	C: 65	G: 67	T: 52	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 243
Reads contain 243 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 35
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1011
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 35
Contig length: 530
Avg. contig coverage: 1
Consensus contains:	A: 148	C: 100	G: 128	T: 153	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 530
Reads contain 529 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 36
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1010
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 36
Contig length: 428
Avg. contig coverage: 1
Consensus contains:	A: 115	C: 73	G: 138	T: 101	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 428
Reads contain 427 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 37
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1009
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 37
Contig length: 555
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 160	G: 95	T: 161	N: 8
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 555
Reads contain 547 bases, 8 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 38
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1008
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 38
Contig length: 480
Avg. contig coverage: 1
Consensus contains:	A: 129	C: 103	G: 123	T: 125	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 480
Reads contain 480 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 39
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1007
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 39
Contig length: 370
Avg. contig coverage: 1
Consensus contains:	A: 123	C: 86	G: 64	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 370
Reads contain 370 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 40
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1006
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 40
Contig length: 386
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 108	G: 56	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 386
Reads contain 386 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 41
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1005
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 41
Contig length: 577
Avg. contig coverage: 1
Consensus contains:	A: 165	C: 137	G: 116	T: 155	N: 4
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 577
Reads contain 573 bases, 4 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 42
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1004
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 42
Contig length: 443
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 113	G: 96	T: 114	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 443
Reads contain 442 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 43
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1003
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 43
Contig length: 330
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 77	G: 74	T: 74	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 330
Reads contain 330 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 44
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1002
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 44
Contig length: 621
Avg. contig coverage: 1
Consensus contains:	A: 162	C: 140	G: 167	T: 148	N: 4
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 621
Reads contain 617 bases, 4 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 45
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1001
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 45
Contig length: 538
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 121	G: 147	T: 128	N: 5
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 538
Reads contain 533 bases, 5 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 46
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1000
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 46
Contig length: 451
Avg. contig coverage: 1
Consensus contains:	A: 108	C: 104	G: 134	T: 103	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 451
Reads contain 449 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 47
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 999
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 47
Contig length: 321
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 66	G: 53	T: 82	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 321
Reads contain 320 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 48
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 998
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 48
Contig length: 418
Avg. contig coverage: 1
Consensus contains:	A: 87	C: 87	G: 131	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 418
Reads contain 418 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 49
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 997
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 49
Contig length: 589
Avg. contig coverage: 1
Consensus contains:	A: 157	C: 127	G: 164	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 589
Reads contain 589 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 50
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 996
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 50
Contig length: 432
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 120	G: 75	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 432
Reads contain 432 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 51
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 995
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 51
Contig length: 277
Avg. contig coverage: 1
Consensus contains:	A: 67	C: 58	G: 85	T: 67	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 277
Reads contain 277 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 52
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 994
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 52
Contig length: 227
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 57	G: 25	T: 69	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 227
Reads contain 227 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 53
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 993
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 53
Contig length: 195
Avg. contig coverage: 1
Consensus contains:	A: 52	C: 52	G: 35	T: 56	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 195
Reads contain 195 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 54
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 992
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 54
Contig length: 155
Avg. contig coverage: 1
Consensus contains:	A: 62	C: 26	G: 29	T: 38	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 155
Reads contain 155 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 55
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 991
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 55
Contig length: 166
Avg. contig coverage: 1
Consensus contains:	A: 23	C: 38	G: 47	T: 58	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 166
Reads contain 166 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 56
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 990
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 56
Contig length: 217
Avg. contig coverage: 1
Consensus contains:	A: 57	C: 44	G: 54	T: 62	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 217
Reads contain 217 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 57
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 989
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 57
Contig length: 163
Avg. contig coverage: 1
Consensus contains:	A: 68	C: 27	G: 23	T: 45	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 163
Reads contain 163 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 58
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 988
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 58
Contig length: 212
Avg. contig coverage: 1
Consensus contains:	A: 83	C: 41	G: 36	T: 52	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 212
Reads contain 212 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 59
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 987
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 59
Contig length: 421
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 59	G: 99	T: 161	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 421
Reads contain 421 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 60
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 986
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 60
Contig length: 212
Avg. contig coverage: 1
Consensus contains:	A: 70	C: 51	G: 42	T: 49	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 212
Reads contain 212 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 61
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 985
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 61
Contig length: 175
Avg. contig coverage: 1
Consensus contains:	A: 30	C: 40	G: 53	T: 52	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 175
Reads contain 175 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 62
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 984
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 62
Contig length: 155
Avg. contig coverage: 1
Consensus contains:	A: 56	C: 18	G: 17	T: 64	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 155
Reads contain 155 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 63
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 983
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 63
Contig length: 188
Avg. contig coverage: 1
Consensus contains:	A: 86	C: 43	G: 27	T: 32	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 188
Reads contain 188 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 64
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 982
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 64
Contig length: 120
Avg. contig coverage: 1
Consensus contains:	A: 47	C: 22	G: 11	T: 40	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 120
Reads contain 120 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 65
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 981
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 65
Contig length: 199
Avg. contig coverage: 1
Consensus contains:	A: 81	C: 38	G: 26	T: 54	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 199
Reads contain 199 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 66
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 980
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 66
Contig length: 566
Avg. contig coverage: 1
Consensus contains:	A: 151	C: 117	G: 135	T: 162	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 566
Reads contain 565 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 67
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 979
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 67
Contig length: 400
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 76	G: 102	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 400
Reads contain 400 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 68
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 978
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 68
Contig length: 347
Avg. contig coverage: 1
Consensus contains:	A: 91	C: 67	G: 101	T: 87	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 347
Reads contain 346 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 69
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 977
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 69
Contig length: 139
Avg. contig coverage: 1
Consensus contains:	A: 29	C: 36	G: 34	T: 40	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 139
Reads contain 139 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 70
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 976
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 70
Contig length: 158
Avg. contig coverage: 1
Consensus contains:	A: 48	C: 45	G: 6	T: 58	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 158
Reads contain 157 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 71
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 975
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 71
Contig length: 129
Avg. contig coverage: 1
Consensus contains:	A: 39	C: 34	G: 19	T: 37	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 129
Reads contain 129 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 72
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 974
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 72
Contig length: 226
Avg. contig coverage: 1
Consensus contains:	A: 61	C: 48	G: 64	T: 53	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 226
Reads contain 226 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 73
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 973
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 73
Contig length: 349
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 66	G: 103	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 349
Reads contain 349 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 74
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 972
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 74
Contig length: 357
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 99	G: 51	T: 76	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 357
Reads contain 357 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 75
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 971
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 75
Contig length: 379
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 94	G: 91	T: 96	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 379
Reads contain 378 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 76
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 970
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 76
Contig length: 208
Avg. contig coverage: 1
Consensus contains:	A: 58	C: 43	G: 57	T: 50	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 208
Reads contain 208 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 77
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 969
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 77
Contig length: 146
Avg. contig coverage: 1
Consensus contains:	A: 51	C: 24	G: 32	T: 39	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 146
Reads contain 146 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 78
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 968
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 78
Contig length: 209
Avg. contig coverage: 1
Consensus contains:	A: 49	C: 47	G: 47	T: 65	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 209
Reads contain 208 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 79
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 967
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 79
Contig length: 412
Avg. contig coverage: 1
Consensus contains:	A: 147	C: 94	G: 66	T: 105	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 412
Reads contain 412 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 80
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 966
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 80
Contig length: 435
Avg. contig coverage: 1
Consensus contains:	A: 157	C: 83	G: 71	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 435
Reads contain 435 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 81
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 965
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 81
Contig length: 447
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 97	G: 110	T: 107	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 447
Reads contain 446 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 82
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 964
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 82
Contig length: 349
Avg. contig coverage: 1
Consensus contains:	A: 77	C: 118	G: 85	T: 69	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 349
Reads contain 349 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 83
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 963
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 83
Contig length: 308
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 67	G: 49	T: 70	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 308
Reads contain 308 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 84
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 962
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 84
Contig length: 138
Avg. contig coverage: 1
Consensus contains:	A: 22	C: 40	G: 45	T: 31	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 138
Reads contain 138 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 85
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 961
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 85
Contig length: 89
Avg. contig coverage: 1
Consensus contains:	A: 30	C: 24	G: 18	T: 17	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 89
Reads contain 89 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 86
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 960
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 86
Contig length: 379
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 71	G: 99	T: 79	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 379
Reads contain 379 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 87
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 959
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 87
Contig length: 455
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 76	G: 121	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 455
Reads contain 455 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 88
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 958
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 88
Contig length: 458
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 105	G: 123	T: 110	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 458
Reads contain 457 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 89
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 957
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 89
Contig length: 357
Avg. contig coverage: 1
Consensus contains:	A: 78	C: 98	G: 86	T: 95	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 357
Reads contain 357 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 90
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 956
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 90
Contig length: 370
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 80	G: 63	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 370
Reads contain 370 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 91
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 955
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 91
Contig length: 318
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 76	G: 75	T: 88	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 318
Reads contain 318 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 92
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 954
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 92
Contig length: 286
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 61	G: 38	T: 80	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 286
Reads contain 286 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 93
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 953
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 93
Contig length: 173
Avg. contig coverage: 1
Consensus contains:	A: 50	C: 34	G: 34	T: 55	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 173
Reads contain 173 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 94
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 952
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 94
Contig length: 523
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 128	G: 124	T: 138	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 523
Reads contain 522 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 95
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 951
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 95
Contig length: 425
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 97	G: 121	T: 95	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 425
Reads contain 424 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 96
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 950
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 96
Contig length: 412
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 106	G: 99	T: 105	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 412
Reads contain 412 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 97
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 949
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 97
Contig length: 340
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 53	G: 68	T: 137	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 340
Reads contain 340 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 98
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 948
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 98
Contig length: 527
Avg. contig coverage: 1
Consensus contains:	A: 165	C: 105	G: 114	T: 143	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 527
Reads contain 527 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 99
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 947
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 99
Contig length: 230
Avg. contig coverage: 1
Consensus contains:	A: 67	C: 55	G: 53	T: 55	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 230
Reads contain 230 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 100
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 946
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 100
Contig length: 378
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 77	G: 91	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 378
Reads contain 378 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 101
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 945
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 101
Contig length: 198
Avg. contig coverage: 1
Consensus contains:	A: 45	C: 50	G: 59	T: 44	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 198
Reads contain 198 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 102
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 944
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 102
Contig length: 398
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 120	G: 90	T: 79	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 398
Reads contain 398 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 103
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 943
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 103
Contig length: 326
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 79	G: 72	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 326
Reads contain 326 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 104
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 942
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 104
Contig length: 248
Avg. contig coverage: 1
Consensus contains:	A: 54	C: 83	G: 53	T: 58	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 248
Reads contain 248 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 105
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 941
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 105
Contig length: 436
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 94	G: 95	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 436
Reads contain 436 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 106
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 940
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 106
Contig length: 391
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 85	G: 55	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 391
Reads contain 391 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 107
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 939
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 107
Contig length: 324
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 88	G: 78	T: 64	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 324
Reads contain 324 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 108
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 938
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 108
Contig length: 413
Avg. contig coverage: 1
Consensus contains:	A: 149	C: 94	G: 62	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 413
Reads contain 413 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 109
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 937
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 109
Contig length: 529
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 151	G: 92	T: 172	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 529
Reads contain 529 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 110
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 936
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 110
Contig length: 460
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 104	G: 94	T: 130	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 460
Reads contain 460 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 111
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 935
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 111
Contig length: 472
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 125	G: 104	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 472
Reads contain 472 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 112
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 934
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 112
Contig length: 422
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 113	G: 68	T: 98	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 422
Reads contain 422 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 113
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 933
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 113
Contig length: 572
Avg. contig coverage: 1
Consensus contains:	A: 152	C: 134	G: 115	T: 171	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 572
Reads contain 572 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 114
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 932
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 114
Contig length: 571
Avg. contig coverage: 1
Consensus contains:	A: 149	C: 126	G: 139	T: 157	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 571
Reads contain 571 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 115
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 931
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 115
Contig length: 263
Avg. contig coverage: 1
Consensus contains:	A: 64	C: 59	G: 63	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 263
Reads contain 263 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 116
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 930
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 116
Contig length: 514
Avg. contig coverage: 1
Consensus contains:	A: 164	C: 158	G: 61	T: 131	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 514
Reads contain 514 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 117
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 929
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 117
Contig length: 322
Avg. contig coverage: 1
Consensus contains:	A: 62	C: 106	G: 68	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 322
Reads contain 322 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 118
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 928
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 118
Contig length: 145
Avg. contig coverage: 1
Consensus contains:	A: 33	C: 24	G: 48	T: 40	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 145
Reads contain 145 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 119
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 927
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 119
Contig length: 532
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 126	G: 108	T: 159	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 532
Reads contain 532 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 120
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 926
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 120
Contig length: 322
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 58	G: 57	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 322
Reads contain 322 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 121
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 925
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 121
Contig length: 291
Avg. contig coverage: 1
Consensus contains:	A: 75	C: 65	G: 73	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 291
Reads contain 291 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 122
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 924
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 122
Contig length: 113
Avg. contig coverage: 1
Consensus contains:	A: 23	C: 29	G: 27	T: 34	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 113
Reads contain 113 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 123
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 923
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 123
Contig length: 501
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 115	G: 101	T: 146	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 501
Reads contain 501 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 124
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 922
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 124
Contig length: 554
Avg. contig coverage: 1
Consensus contains:	A: 151	C: 121	G: 132	T: 150	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 554
Reads contain 554 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 125
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 921
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 125
Contig length: 214
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 37	G: 13	T: 66	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 214
Reads contain 214 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 126
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 920
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 126
Contig length: 442
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 131	G: 108	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 442
Reads contain 442 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 127
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 919
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 127
Contig length: 386
Avg. contig coverage: 1
Consensus contains:	A: 140	C: 84	G: 75	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 386
Reads contain 386 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 128
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 918
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 128
Contig length: 525
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 116	G: 119	T: 144	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 525
Reads contain 525 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 129
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 917
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 129
Contig length: 385
Avg. contig coverage: 1
Consensus contains:	A: 95	C: 124	G: 70	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 385
Reads contain 385 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 130
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 916
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 130
Contig length: 234
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 31	G: 35	T: 66	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 234
Reads contain 234 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 131
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 915
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 131
Contig length: 389
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 74	G: 106	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 389
Reads contain 389 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 132
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 914
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 132
Contig length: 469
Avg. contig coverage: 1
Consensus contains:	A: 163	C: 108	G: 66	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 469
Reads contain 469 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 133
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 913
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 133
Contig length: 534
Avg. contig coverage: 1
Consensus contains:	A: 159	C: 111	G: 128	T: 135	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 534
Reads contain 533 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 134
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 912
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 134
Contig length: 406
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 97	G: 59	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 406
Reads contain 406 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 135
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 911
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 135
Contig length: 305
Avg. contig coverage: 1
Consensus contains:	A: 77	C: 83	G: 67	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 305
Reads contain 305 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 136
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 910
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 136
Contig length: 97
Avg. contig coverage: 1
Consensus contains:	A: 22	C: 17	G: 37	T: 21	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 97
Reads contain 97 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 137
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 909
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 137
Contig length: 496
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 97	G: 140	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 496
Reads contain 496 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 138
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 908
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 138
Contig length: 352
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 86	G: 48	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 352
Reads contain 352 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 139
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 907
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 139
Contig length: 311
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 77	G: 54	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 311
Reads contain 311 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 140
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 906
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 140
Contig length: 356
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 97	G: 106	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 356
Reads contain 356 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 141
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 905
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 141
Contig length: 543
Avg. contig coverage: 1
Consensus contains:	A: 157	C: 138	G: 114	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 543
Reads contain 543 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 142
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 904
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 142
Contig length: 463
Avg. contig coverage: 1
Consensus contains:	A: 113	C: 100	G: 118	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 463
Reads contain 463 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 143
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 903
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 143
Contig length: 215
Avg. contig coverage: 1
Consensus contains:	A: 48	C: 65	G: 51	T: 51	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 215
Reads contain 215 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 144
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 902
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 144
Contig length: 419
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 115	G: 82	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 419
Reads contain 419 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 145
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 901
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 145
Contig length: 89
Avg. contig coverage: 1
Consensus contains:	A: 34	C: 17	G: 16	T: 22	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 89
Reads contain 89 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 146
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 900
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 146
Contig length: 112
Avg. contig coverage: 1
Consensus contains:	A: 20	C: 18	G: 43	T: 31	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 112
Reads contain 112 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 147
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 899
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 147
Contig length: 282
Avg. contig coverage: 1
Consensus contains:	A: 38	C: 79	G: 77	T: 88	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 282
Reads contain 282 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 148
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 898
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 148
Contig length: 221
Avg. contig coverage: 1
Consensus contains:	A: 62	C: 57	G: 62	T: 40	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 221
Reads contain 221 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 149
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 897
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 149
Contig length: 204
Avg. contig coverage: 1
Consensus contains:	A: 36	C: 64	G: 62	T: 42	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 204
Reads contain 204 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 150
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 896
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 150
Contig length: 347
Avg. contig coverage: 1
Consensus contains:	A: 91	C: 98	G: 65	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 347
Reads contain 347 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 151
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 895
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 151
Contig length: 291
Avg. contig coverage: 1
Consensus contains:	A: 87	C: 65	G: 57	T: 82	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 291
Reads contain 291 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 152
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 894
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 152
Contig length: 241
Avg. contig coverage: 1
Consensus contains:	A: 58	C: 39	G: 80	T: 64	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 241
Reads contain 241 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 153
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 893
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 153
Contig length: 276
Avg. contig coverage: 1
Consensus contains:	A: 66	C: 56	G: 76	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 276
Reads contain 276 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 154
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 892
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 154
Contig length: 486
Avg. contig coverage: 1
Consensus contains:	A: 169	C: 110	G: 79	T: 128	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 486
Reads contain 486 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 155
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 891
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 155
Contig length: 498
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 168	G: 101	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 498
Reads contain 498 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 156
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 890
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 156
Contig length: 507
Avg. contig coverage: 1
Consensus contains:	A: 145	C: 118	G: 111	T: 133	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 507
Reads contain 507 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 157
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 889
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 157
Contig length: 537
Avg. contig coverage: 1
Consensus contains:	A: 144	C: 133	G: 104	T: 156	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 537
Reads contain 537 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 158
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 888
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 158
Contig length: 457
Avg. contig coverage: 1
Consensus contains:	A: 152	C: 76	G: 129	T: 100	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 457
Reads contain 457 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 159
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 887
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 159
Contig length: 606
Avg. contig coverage: 1
Consensus contains:	A: 151	C: 129	G: 179	T: 147	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 606
Reads contain 606 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 160
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 886
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 160
Contig length: 529
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 92	G: 117	T: 174	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 529
Reads contain 529 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 161
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 885
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 161
Contig length: 214
Avg. contig coverage: 1
Consensus contains:	A: 84	C: 36	G: 19	T: 75	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 214
Reads contain 214 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 162
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 884
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 162
Contig length: 552
Avg. contig coverage: 1
Consensus contains:	A: 167	C: 102	G: 137	T: 146	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 552
Reads contain 552 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 163
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 883
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 163
Contig length: 427
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 80	G: 99	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 427
Reads contain 427 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 164
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 882
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 164
Contig length: 498
Avg. contig coverage: 1
Consensus contains:	A: 160	C: 110	G: 89	T: 139	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 498
Reads contain 498 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 165
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 881
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 165
Contig length: 473
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 85	G: 95	T: 147	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 473
Reads contain 473 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 166
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 880
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 166
Contig length: 568
Avg. contig coverage: 1
Consensus contains:	A: 177	C: 120	G: 121	T: 150	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 568
Reads contain 568 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 167
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 879
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 167
Contig length: 501
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 135	G: 97	T: 152	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 501
Reads contain 501 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 168
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 878
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 168
Contig length: 470
Avg. contig coverage: 1
Consensus contains:	A: 134	C: 92	G: 111	T: 133	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 470
Reads contain 470 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 169
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 877
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 169
Contig length: 334
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 70	G: 92	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 334
Reads contain 334 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 170
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 876
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 170
Contig length: 524
Avg. contig coverage: 1
Consensus contains:	A: 153	C: 125	G: 123	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 524
Reads contain 524 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 171
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 875
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 171
Contig length: 657
Avg. contig coverage: 1
Consensus contains:	A: 171	C: 161	G: 107	T: 218	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 657
Reads contain 657 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 172
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 874
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 172
Contig length: 495
Avg. contig coverage: 1
Consensus contains:	A: 145	C: 131	G: 117	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 495
Reads contain 495 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 173
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 873
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 173
Contig length: 587
Avg. contig coverage: 1
Consensus contains:	A: 155	C: 131	G: 156	T: 145	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 587
Reads contain 587 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 174
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 872
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 174
Contig length: 455
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 104	G: 125	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 455
Reads contain 455 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 175
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 871
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 175
Contig length: 538
Avg. contig coverage: 1
Consensus contains:	A: 170	C: 116	G: 91	T: 161	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 538
Reads contain 538 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 176
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 870
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 176
Contig length: 551
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 99	G: 114	T: 192	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 551
Reads contain 551 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 177
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 869
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 177
Contig length: 489
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 104	G: 106	T: 146	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 489
Reads contain 488 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 178
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 868
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 178
Contig length: 254
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 44	G: 35	T: 71	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 254
Reads contain 254 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 179
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 867
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 179
Contig length: 612
Avg. contig coverage: 1
Consensus contains:	A: 147	C: 129	G: 155	T: 179	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 612
Reads contain 610 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 180
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 866
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 180
Contig length: 175
Avg. contig coverage: 1
Consensus contains:	A: 47	C: 27	G: 54	T: 47	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 175
Reads contain 175 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 181
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 865
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 181
Contig length: 459
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 91	G: 108	T: 128	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 459
Reads contain 459 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 182
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 864
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 182
Contig length: 485
Avg. contig coverage: 1
Consensus contains:	A: 121	C: 133	G: 119	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 485
Reads contain 485 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 183
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 863
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 183
Contig length: 579
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 141	G: 124	T: 190	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 579
Reads contain 579 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 184
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 862
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 184
Contig length: 311
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 81	G: 43	T: 67	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 311
Reads contain 311 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 185
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 861
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 185
Contig length: 413
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 86	G: 117	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 413
Reads contain 413 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 186
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 860
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 186
Contig length: 469
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 109	G: 110	T: 139	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 469
Reads contain 469 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 187
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 859
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 187
Contig length: 471
Avg. contig coverage: 1
Consensus contains:	A: 155	C: 143	G: 69	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 471
Reads contain 471 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 188
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 858
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 188
Contig length: 537
Avg. contig coverage: 1
Consensus contains:	A: 151	C: 120	G: 118	T: 148	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 537
Reads contain 537 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 189
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 857
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 189
Contig length: 519
Avg. contig coverage: 1
Consensus contains:	A: 147	C: 115	G: 131	T: 126	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 519
Reads contain 519 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 190
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 856
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 190
Contig length: 538
Avg. contig coverage: 1
Consensus contains:	A: 197	C: 120	G: 84	T: 137	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 538
Reads contain 538 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 191
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 855
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 191
Contig length: 600
Avg. contig coverage: 1
Consensus contains:	A: 200	C: 113	G: 143	T: 141	N: 3
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 600
Reads contain 597 bases, 3 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 192
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 854
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 192
Contig length: 405
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 100	G: 107	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 405
Reads contain 405 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 193
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 853
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 193
Contig length: 305
Avg. contig coverage: 1
Consensus contains:	A: 81	C: 58	G: 83	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 305
Reads contain 305 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 194
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 852
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 194
Contig length: 498
Avg. contig coverage: 1
Consensus contains:	A: 142	C: 105	G: 121	T: 130	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 498
Reads contain 498 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 195
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 851
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 195
Contig length: 450
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 103	G: 120	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 450
Reads contain 450 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 196
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 850
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 196
Contig length: 494
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 147	G: 102	T: 126	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 494
Reads contain 494 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 197
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 849
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 197
Contig length: 525
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 109	G: 132	T: 149	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 525
Reads contain 525 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 198
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 848
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 198
Contig length: 224
Avg. contig coverage: 1
Consensus contains:	A: 91	C: 40	G: 35	T: 58	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 224
Reads contain 224 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 199
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 847
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 199
Contig length: 510
Avg. contig coverage: 1
Consensus contains:	A: 159	C: 118	G: 87	T: 146	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 510
Reads contain 510 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 200
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 846
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 200
Contig length: 581
Avg. contig coverage: 1
Consensus contains:	A: 147	C: 170	G: 113	T: 151	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 581
Reads contain 581 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 201
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 845
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 201
Contig length: 480
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 121	G: 96	T: 136	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 480
Reads contain 480 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 202
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 844
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 202
Contig length: 290
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 73	G: 32	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 290
Reads contain 290 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 203
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 843
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 203
Contig length: 413
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 167	G: 35	T: 135	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 413
Reads contain 413 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 204
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 842
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 204
Contig length: 559
Avg. contig coverage: 1
Consensus contains:	A: 160	C: 114	G: 127	T: 158	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 559
Reads contain 559 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 205
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 841
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 205
Contig length: 340
Avg. contig coverage: 1
Consensus contains:	A: 83	C: 76	G: 107	T: 74	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 340
Reads contain 340 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 206
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 840
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 206
Contig length: 418
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 74	G: 124	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 418
Reads contain 418 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 207
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 839
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 207
Contig length: 566
Avg. contig coverage: 1
Consensus contains:	A: 154	C: 140	G: 122	T: 150	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 566
Reads contain 566 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 208
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 838
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 208
Contig length: 311
Avg. contig coverage: 1
Consensus contains:	A: 100	C: 78	G: 48	T: 85	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 311
Reads contain 311 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 209
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 837
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 209
Contig length: 554
Avg. contig coverage: 1
Consensus contains:	A: 187	C: 147	G: 71	T: 149	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 554
Reads contain 554 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 210
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 836
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 210
Contig length: 567
Avg. contig coverage: 1
Consensus contains:	A: 150	C: 104	G: 140	T: 173	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 567
Reads contain 567 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 211
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 835
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 211
Contig length: 541
Avg. contig coverage: 1
Consensus contains:	A: 150	C: 116	G: 111	T: 164	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 541
Reads contain 541 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 212
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 834
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 212
Contig length: 435
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 88	G: 75	T: 129	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 435
Reads contain 435 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 213
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 833
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 213
Contig length: 538
Avg. contig coverage: 1
Consensus contains:	A: 133	C: 116	G: 141	T: 148	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 538
Reads contain 538 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 214
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 832
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 214
Contig length: 339
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 82	G: 100	T: 75	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 339
Reads contain 339 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 215
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 831
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 215
Contig length: 460
Avg. contig coverage: 1
Consensus contains:	A: 157	C: 111	G: 66	T: 126	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 460
Reads contain 460 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 216
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 830
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 216
Contig length: 493
Avg. contig coverage: 1
Consensus contains:	A: 155	C: 100	G: 88	T: 150	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 493
Reads contain 493 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 217
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 829
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 217
Contig length: 258
Avg. contig coverage: 1
Consensus contains:	A: 66	C: 81	G: 48	T: 63	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 258
Reads contain 258 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 218
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 828
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 218
Contig length: 488
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 121	G: 115	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 488
Reads contain 488 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 219
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 827
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 219
Contig length: 466
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 122	G: 107	T: 98	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 466
Reads contain 466 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 220
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 826
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 220
Contig length: 500
Avg. contig coverage: 1
Consensus contains:	A: 163	C: 100	G: 118	T: 119	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 500
Reads contain 500 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 221
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 825
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 221
Contig length: 538
Avg. contig coverage: 1
Consensus contains:	A: 142	C: 123	G: 109	T: 164	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 538
Reads contain 538 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 222
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 824
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 222
Contig length: 542
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 154	G: 149	T: 110	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 542
Reads contain 541 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 223
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 823
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 223
Contig length: 544
Avg. contig coverage: 1
Consensus contains:	A: 133	C: 108	G: 101	T: 201	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 544
Reads contain 543 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 224
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 822
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 224
Contig length: 537
Avg. contig coverage: 1
Consensus contains:	A: 123	C: 128	G: 118	T: 168	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 537
Reads contain 537 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 225
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 821
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 225
Contig length: 559
Avg. contig coverage: 1
Consensus contains:	A: 142	C: 123	G: 117	T: 177	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 559
Reads contain 559 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 226
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 820
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 226
Contig length: 359
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 62	G: 128	T: 71	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 359
Reads contain 359 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 227
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 819
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 227
Contig length: 142
Avg. contig coverage: 1
Consensus contains:	A: 54	C: 21	G: 47	T: 20	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 142
Reads contain 142 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 228
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 818
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 228
Contig length: 352
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 74	G: 67	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 352
Reads contain 352 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 229
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 817
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 229
Contig length: 464
Avg. contig coverage: 1
Consensus contains:	A: 150	C: 127	G: 61	T: 126	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 464
Reads contain 464 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 230
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 816
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 230
Contig length: 487
Avg. contig coverage: 1
Consensus contains:	A: 147	C: 128	G: 106	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 487
Reads contain 487 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 231
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 815
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 231
Contig length: 361
Avg. contig coverage: 1
Consensus contains:	A: 83	C: 69	G: 105	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 361
Reads contain 361 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 232
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 814
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 232
Contig length: 494
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 117	G: 129	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 494
Reads contain 494 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 233
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 813
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 233
Contig length: 300
Avg. contig coverage: 1
Consensus contains:	A: 70	C: 67	G: 78	T: 85	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 300
Reads contain 300 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 234
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 812
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 234
Contig length: 326
Avg. contig coverage: 1
Consensus contains:	A: 63	C: 90	G: 86	T: 86	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 326
Reads contain 325 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 235
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 811
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 235
Contig length: 485
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 124	G: 125	T: 125	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 485
Reads contain 485 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 236
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 810
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 236
Contig length: 543
Avg. contig coverage: 1
Consensus contains:	A: 84	C: 178	G: 108	T: 173	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 543
Reads contain 543 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 237
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 809
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 237
Contig length: 656
Avg. contig coverage: 1
Consensus contains:	A: 184	C: 144	G: 162	T: 164	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 656
Reads contain 654 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 238
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 808
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 238
Contig length: 376
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 85	G: 95	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 376
Reads contain 376 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 239
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 807
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 239
Contig length: 623
Avg. contig coverage: 1
Consensus contains:	A: 171	C: 120	G: 172	T: 158	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 623
Reads contain 621 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 240
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 806
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 240
Contig length: 446
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 103	G: 117	T: 110	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 446
Reads contain 446 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 241
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 805
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 241
Contig length: 560
Avg. contig coverage: 1
Consensus contains:	A: 153	C: 131	G: 112	T: 164	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 560
Reads contain 560 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 242
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 804
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 242
Contig length: 378
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 102	G: 88	T: 91	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 378
Reads contain 378 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 243
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 803
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 243
Contig length: 553
Avg. contig coverage: 1
Consensus contains:	A: 191	C: 121	G: 109	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 553
Reads contain 553 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 244
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 802
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 244
Contig length: 661
Avg. contig coverage: 1
Consensus contains:	A: 170	C: 148	G: 168	T: 175	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 661
Reads contain 661 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 245
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 801
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 245
Contig length: 441
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 97	G: 120	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 441
Reads contain 441 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 246
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 800
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 246
Contig length: 506
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 148	G: 116	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 506
Reads contain 506 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 247
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 799
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 247
Contig length: 478
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 133	G: 93	T: 135	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 478
Reads contain 478 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 248
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 798
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 248
Contig length: 587
Avg. contig coverage: 1
Consensus contains:	A: 152	C: 107	G: 147	T: 179	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 587
Reads contain 585 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 249
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 797
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 249
Contig length: 489
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 123	G: 105	T: 130	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 489
Reads contain 489 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 250
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 796
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 250
Contig length: 523
Avg. contig coverage: 1
Consensus contains:	A: 140	C: 113	G: 96	T: 174	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 523
Reads contain 523 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 251
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 795
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 251
Contig length: 433
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 104	G: 104	T: 103	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 433
Reads contain 433 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 252
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 794
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 252
Contig length: 573
Avg. contig coverage: 1
Consensus contains:	A: 159	C: 150	G: 114	T: 150	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 573
Reads contain 573 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 253
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 793
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 253
Contig length: 545
Avg. contig coverage: 1
Consensus contains:	A: 182	C: 107	G: 147	T: 108	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 545
Reads contain 544 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 254
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 792
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 254
Contig length: 615
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 148	G: 171	T: 154	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 615
Reads contain 614 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 255
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 791
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 255
Contig length: 557
Avg. contig coverage: 1
Consensus contains:	A: 162	C: 127	G: 96	T: 172	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 557
Reads contain 557 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 256
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 790
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 256
Contig length: 559
Avg. contig coverage: 1
Consensus contains:	A: 148	C: 130	G: 102	T: 179	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 559
Reads contain 559 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 257
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 789
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 257
Contig length: 553
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 133	G: 142	T: 142	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 553
Reads contain 552 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 258
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 788
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 258
Contig length: 502
Avg. contig coverage: 1
Consensus contains:	A: 176	C: 134	G: 61	T: 131	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 502
Reads contain 502 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 259
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 787
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 259
Contig length: 473
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 98	G: 128	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 473
Reads contain 473 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 260
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 786
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 260
Contig length: 457
Avg. contig coverage: 1
Consensus contains:	A: 149	C: 104	G: 80	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 457
Reads contain 457 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 261
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 785
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 261
Contig length: 404
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 95	G: 96	T: 76	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 404
Reads contain 404 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 262
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 784
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 262
Contig length: 486
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 110	G: 124	T: 114	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 486
Reads contain 486 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 263
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 783
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 263
Contig length: 443
Avg. contig coverage: 1
Consensus contains:	A: 159	C: 94	G: 104	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 443
Reads contain 443 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 264
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 782
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 264
Contig length: 480
Avg. contig coverage: 1
Consensus contains:	A: 160	C: 111	G: 72	T: 137	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 480
Reads contain 480 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 265
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 781
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 265
Contig length: 489
Avg. contig coverage: 1
Consensus contains:	A: 134	C: 111	G: 101	T: 143	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 489
Reads contain 489 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 266
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 780
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 266
Contig length: 592
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 141	G: 150	T: 145	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 592
Reads contain 592 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 267
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 779
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 267
Contig length: 336
Avg. contig coverage: 1
Consensus contains:	A: 91	C: 54	G: 76	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 336
Reads contain 336 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 268
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 778
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 268
Contig length: 446
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 78	G: 94	T: 143	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 446
Reads contain 446 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 269
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 777
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 269
Contig length: 522
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 96	G: 141	T: 186	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 522
Reads contain 522 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 270
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 776
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 270
Contig length: 590
Avg. contig coverage: 1
Consensus contains:	A: 154	C: 124	G: 146	T: 166	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 590
Reads contain 590 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 271
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 775
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 271
Contig length: 495
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 142	G: 107	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 495
Reads contain 495 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 272
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 774
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 272
Contig length: 524
Avg. contig coverage: 1
Consensus contains:	A: 154	C: 117	G: 107	T: 146	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 524
Reads contain 524 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 273
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 773
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 273
Contig length: 159
Avg. contig coverage: 1
Consensus contains:	A: 59	C: 36	G: 23	T: 41	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 159
Reads contain 159 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 274
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 772
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 274
Contig length: 411
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 104	G: 83	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 411
Reads contain 411 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 275
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 771
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 275
Contig length: 216
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 35	G: 32	T: 55	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 216
Reads contain 216 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 276
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 770
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 276
Contig length: 382
Avg. contig coverage: 1
Consensus contains:	A: 77	C: 113	G: 128	T: 64	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 382
Reads contain 382 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 277
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 769
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 277
Contig length: 401
Avg. contig coverage: 1
Consensus contains:	A: 96	C: 74	G: 87	T: 144	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 401
Reads contain 401 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 278
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 768
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 278
Contig length: 355
Avg. contig coverage: 1
Consensus contains:	A: 129	C: 73	G: 61	T: 92	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 355
Reads contain 355 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 279
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 767
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 279
Contig length: 443
Avg. contig coverage: 1
Consensus contains:	A: 164	C: 91	G: 71	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 443
Reads contain 443 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 280
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 766
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 280
Contig length: 467
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 106	G: 112	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 467
Reads contain 467 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 281
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 765
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 281
Contig length: 384
Avg. contig coverage: 1
Consensus contains:	A: 92	C: 74	G: 120	T: 98	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 384
Reads contain 384 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 282
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 764
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 282
Contig length: 386
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 54	G: 133	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 386
Reads contain 386 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 283
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 763
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 283
Contig length: 512
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 114	G: 114	T: 143	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 512
Reads contain 512 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 284
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 762
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 284
Contig length: 418
Avg. contig coverage: 1
Consensus contains:	A: 96	C: 75	G: 79	T: 168	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 418
Reads contain 418 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 285
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 761
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 285
Contig length: 422
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 103	G: 67	T: 127	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 422
Reads contain 422 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 286
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 760
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 286
Contig length: 307
Avg. contig coverage: 1
Consensus contains:	A: 60	C: 76	G: 82	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 307
Reads contain 307 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 287
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 759
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 287
Contig length: 488
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 96	G: 127	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 488
Reads contain 488 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 288
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 758
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 288
Contig length: 675
Avg. contig coverage: 1
Consensus contains:	A: 194	C: 136	G: 156	T: 187	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 675
Reads contain 673 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 289
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 757
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 289
Contig length: 442
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 111	G: 108	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 442
Reads contain 442 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 290
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 756
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 290
Contig length: 537
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 94	G: 159	T: 153	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 537
Reads contain 537 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 291
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 755
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 291
Contig length: 465
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 107	G: 84	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 465
Reads contain 465 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 292
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 754
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 292
Contig length: 409
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 104	G: 93	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 409
Reads contain 409 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 293
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 753
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 293
Contig length: 496
Avg. contig coverage: 1
Consensus contains:	A: 169	C: 96	G: 123	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 496
Reads contain 496 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 294
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 752
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 294
Contig length: 336
Avg. contig coverage: 1
Consensus contains:	A: 126	C: 78	G: 47	T: 85	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 336
Reads contain 336 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 295
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 751
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 295
Contig length: 416
Avg. contig coverage: 1
Consensus contains:	A: 121	C: 93	G: 83	T: 119	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 416
Reads contain 416 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 296
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 750
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 296
Contig length: 447
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 77	G: 130	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 447
Reads contain 447 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 297
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 749
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 297
Contig length: 158
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 23	G: 28	T: 25	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 158
Reads contain 158 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 298
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 748
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 298
Contig length: 417
Avg. contig coverage: 1
Consensus contains:	A: 142	C: 100	G: 84	T: 91	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 417
Reads contain 417 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 299
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 747
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 299
Contig length: 486
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 117	G: 102	T: 135	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 486
Reads contain 485 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 300
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 746
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 300
Contig length: 490
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 106	G: 146	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 490
Reads contain 490 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 301
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 745
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 301
Contig length: 132
Avg. contig coverage: 1
Consensus contains:	A: 73	C: 0	G: 30	T: 29	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 132
Reads contain 132 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 302
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 744
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 302
Contig length: 377
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 75	G: 75	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 377
Reads contain 377 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 303
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 743
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 303
Contig length: 472
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 101	G: 85	T: 158	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 472
Reads contain 472 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 304
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 742
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 304
Contig length: 595
Avg. contig coverage: 1
Consensus contains:	A: 177	C: 130	G: 180	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 595
Reads contain 595 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 305
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 741
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 305
Contig length: 457
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 120	G: 103	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 457
Reads contain 457 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 306
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 740
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 306
Contig length: 494
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 126	G: 103	T: 146	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 494
Reads contain 494 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 307
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 739
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 307
Contig length: 435
Avg. contig coverage: 1
Consensus contains:	A: 150	C: 107	G: 66	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 435
Reads contain 435 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 308
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 738
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 308
Contig length: 430
Avg. contig coverage: 1
Consensus contains:	A: 126	C: 99	G: 83	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 430
Reads contain 430 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 309
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 737
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 309
Contig length: 640
Avg. contig coverage: 1
Consensus contains:	A: 152	C: 176	G: 123	T: 189	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 640
Reads contain 640 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 310
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 736
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 310
Contig length: 637
Avg. contig coverage: 1
Consensus contains:	A: 164	C: 151	G: 139	T: 182	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 637
Reads contain 636 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 311
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 735
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 311
Contig length: 512
Avg. contig coverage: 1
Consensus contains:	A: 134	C: 113	G: 112	T: 153	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 512
Reads contain 512 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 312
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 734
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 312
Contig length: 396
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 89	G: 77	T: 121	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 396
Reads contain 396 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 313
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 733
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 313
Contig length: 664
Avg. contig coverage: 1
Consensus contains:	A: 188	C: 119	G: 177	T: 178	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 664
Reads contain 662 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 314
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 732
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 314
Contig length: 525
Avg. contig coverage: 1
Consensus contains:	A: 150	C: 112	G: 139	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 525
Reads contain 525 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 315
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 731
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 315
Contig length: 613
Avg. contig coverage: 1
Consensus contains:	A: 178	C: 117	G: 156	T: 161	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 613
Reads contain 612 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 316
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 730
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 316
Contig length: 518
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 147	G: 109	T: 135	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 518
Reads contain 518 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 317
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 729
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 317
Contig length: 625
Avg. contig coverage: 1
Consensus contains:	A: 162	C: 145	G: 162	T: 155	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 625
Reads contain 624 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 318
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 728
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 318
Contig length: 577
Avg. contig coverage: 1
Consensus contains:	A: 169	C: 131	G: 128	T: 149	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 577
Reads contain 577 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 319
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 727
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 319
Contig length: 554
Avg. contig coverage: 1
Consensus contains:	A: 171	C: 141	G: 109	T: 133	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 554
Reads contain 554 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 320
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 726
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 320
Contig length: 611
Avg. contig coverage: 1
Consensus contains:	A: 204	C: 139	G: 95	T: 171	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 611
Reads contain 609 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 321
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 725
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 321
Contig length: 652
Avg. contig coverage: 1
Consensus contains:	A: 160	C: 140	G: 160	T: 191	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 652
Reads contain 651 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 322
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 724
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 322
Contig length: 535
Avg. contig coverage: 1
Consensus contains:	A: 144	C: 102	G: 113	T: 176	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 535
Reads contain 535 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 323
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 723
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 323
Contig length: 570
Avg. contig coverage: 1
Consensus contains:	A: 142	C: 136	G: 151	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 570
Reads contain 570 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 324
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 722
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 324
Contig length: 498
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 117	G: 125	T: 131	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 498
Reads contain 497 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 325
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 721
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 325
Contig length: 574
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 140	G: 110	T: 183	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 574
Reads contain 574 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 326
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 720
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 326
Contig length: 541
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 117	G: 165	T: 129	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 541
Reads contain 541 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 327
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 719
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 327
Contig length: 569
Avg. contig coverage: 1
Consensus contains:	A: 176	C: 131	G: 78	T: 184	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 569
Reads contain 569 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 328
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 718
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 328
Contig length: 519
Avg. contig coverage: 1
Consensus contains:	A: 191	C: 117	G: 63	T: 148	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 519
Reads contain 519 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 329
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 717
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 329
Contig length: 603
Avg. contig coverage: 1
Consensus contains:	A: 167	C: 144	G: 122	T: 170	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 603
Reads contain 603 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 330
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 716
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 330
Contig length: 588
Avg. contig coverage: 1
Consensus contains:	A: 198	C: 119	G: 105	T: 165	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 588
Reads contain 587 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 331
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 715
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 331
Contig length: 522
Avg. contig coverage: 1
Consensus contains:	A: 155	C: 102	G: 141	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 522
Reads contain 522 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 332
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 714
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 332
Contig length: 483
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 137	G: 109	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 483
Reads contain 483 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 333
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 713
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 333
Contig length: 585
Avg. contig coverage: 1
Consensus contains:	A: 157	C: 104	G: 149	T: 174	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 585
Reads contain 584 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 334
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 712
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 334
Contig length: 596
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 146	G: 140	T: 173	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 596
Reads contain 596 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 335
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 711
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 335
Contig length: 551
Avg. contig coverage: 1
Consensus contains:	A: 194	C: 102	G: 127	T: 127	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 551
Reads contain 550 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 336
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 710
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 336
Contig length: 388
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 86	G: 83	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 388
Reads contain 388 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 337
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 709
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 337
Contig length: 387
Avg. contig coverage: 1
Consensus contains:	A: 149	C: 94	G: 58	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 387
Reads contain 387 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 338
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 708
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 338
Contig length: 451
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 115	G: 83	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 451
Reads contain 451 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 339
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 707
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 339
Contig length: 457
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 107	G: 107	T: 136	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 457
Reads contain 457 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 340
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 706
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 340
Contig length: 346
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 83	G: 42	T: 94	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 346
Reads contain 346 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 341
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 705
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 341
Contig length: 507
Avg. contig coverage: 1
Consensus contains:	A: 172	C: 111	G: 83	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 507
Reads contain 507 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 342
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 704
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 342
Contig length: 397
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 133	G: 56	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 397
Reads contain 397 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 343
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 703
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 343
Contig length: 563
Avg. contig coverage: 1
Consensus contains:	A: 166	C: 116	G: 166	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 563
Reads contain 563 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 344
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 702
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 344
Contig length: 511
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 130	G: 109	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 511
Reads contain 511 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 345
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 701
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 345
Contig length: 344
Avg. contig coverage: 1
Consensus contains:	A: 84	C: 80	G: 78	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 344
Reads contain 344 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 346
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 700
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 346
Contig length: 486
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 111	G: 108	T: 138	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 486
Reads contain 485 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 347
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 699
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 347
Contig length: 312
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 61	G: 74	T: 95	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 312
Reads contain 312 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 348
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 698
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 348
Contig length: 402
Avg. contig coverage: 1
Consensus contains:	A: 71	C: 78	G: 89	T: 164	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 402
Reads contain 402 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 349
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 697
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 349
Contig length: 320
Avg. contig coverage: 1
Consensus contains:	A: 115	C: 73	G: 55	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 320
Reads contain 320 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 350
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 696
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 350
Contig length: 298
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 64	G: 47	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 298
Reads contain 298 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 351
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 695
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 351
Contig length: 558
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 115	G: 139	T: 147	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 558
Reads contain 557 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 352
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 694
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 352
Contig length: 536
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 116	G: 142	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 536
Reads contain 536 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 353
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 693
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 353
Contig length: 522
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 141	G: 109	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 522
Reads contain 522 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 354
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 692
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 354
Contig length: 458
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 98	G: 99	T: 129	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 458
Reads contain 457 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 355
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 691
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 355
Contig length: 517
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 124	G: 109	T: 157	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 517
Reads contain 517 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 356
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 690
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 356
Contig length: 437
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 120	G: 87	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 437
Reads contain 437 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 357
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 689
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 357
Contig length: 523
Avg. contig coverage: 1
Consensus contains:	A: 180	C: 147	G: 80	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 523
Reads contain 523 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 358
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 688
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 358
Contig length: 503
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 154	G: 95	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 503
Reads contain 503 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 359
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 687
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 359
Contig length: 534
Avg. contig coverage: 1
Consensus contains:	A: 194	C: 139	G: 71	T: 130	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 534
Reads contain 534 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 360
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 686
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 360
Contig length: 491
Avg. contig coverage: 1
Consensus contains:	A: 145	C: 116	G: 91	T: 138	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 491
Reads contain 490 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 361
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 685
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 361
Contig length: 502
Avg. contig coverage: 1
Consensus contains:	A: 169	C: 80	G: 130	T: 122	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 502
Reads contain 501 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 362
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 684
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 362
Contig length: 442
Avg. contig coverage: 1
Consensus contains:	A: 113	C: 124	G: 101	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 442
Reads contain 442 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 363
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 683
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 363
Contig length: 557
Avg. contig coverage: 1
Consensus contains:	A: 145	C: 112	G: 150	T: 150	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 557
Reads contain 557 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 364
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 682
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 364
Contig length: 605
Avg. contig coverage: 1
Consensus contains:	A: 176	C: 111	G: 158	T: 160	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 605
Reads contain 605 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 365
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 681
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 365
Contig length: 473
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 136	G: 91	T: 110	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 473
Reads contain 472 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 366
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 680
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 366
Contig length: 546
Avg. contig coverage: 1
Consensus contains:	A: 189	C: 113	G: 110	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 546
Reads contain 546 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 367
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 679
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 367
Contig length: 503
Avg. contig coverage: 1
Consensus contains:	A: 123	C: 155	G: 71	T: 154	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 503
Reads contain 503 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 368
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 678
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 368
Contig length: 504
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 144	G: 115	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 504
Reads contain 504 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 369
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 677
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 369
Contig length: 435
Avg. contig coverage: 1
Consensus contains:	A: 145	C: 92	G: 86	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 435
Reads contain 435 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 370
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 676
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 370
Contig length: 496
Avg. contig coverage: 1
Consensus contains:	A: 129	C: 122	G: 113	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 496
Reads contain 496 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 371
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 675
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 371
Contig length: 533
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 130	G: 142	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 533
Reads contain 533 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 372
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 674
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 372
Contig length: 406
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 105	G: 59	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 406
Reads contain 406 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 373
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 673
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 373
Contig length: 463
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 116	G: 90	T: 150	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 463
Reads contain 463 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 374
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 672
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 374
Contig length: 573
Avg. contig coverage: 1
Consensus contains:	A: 149	C: 158	G: 123	T: 143	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 573
Reads contain 573 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 375
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 671
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 375
Contig length: 438
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 75	G: 91	T: 169	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 438
Reads contain 438 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 376
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 670
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 376
Contig length: 438
Avg. contig coverage: 1
Consensus contains:	A: 121	C: 116	G: 83	T: 117	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 438
Reads contain 437 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 377
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 669
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 377
Contig length: 302
Avg. contig coverage: 1
Consensus contains:	A: 70	C: 79	G: 72	T: 81	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 302
Reads contain 302 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 378
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 668
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 378
Contig length: 405
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 82	G: 116	T: 105	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 405
Reads contain 405 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 379
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 667
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 379
Contig length: 594
Avg. contig coverage: 1
Consensus contains:	A: 168	C: 111	G: 165	T: 149	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 594
Reads contain 593 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 380
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 666
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 380
Contig length: 459
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 95	G: 94	T: 148	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 459
Reads contain 459 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 381
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 665
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 381
Contig length: 527
Avg. contig coverage: 1
Consensus contains:	A: 133	C: 107	G: 114	T: 173	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 527
Reads contain 527 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 382
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 664
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 382
Contig length: 569
Avg. contig coverage: 1
Consensus contains:	A: 164	C: 112	G: 155	T: 138	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 569
Reads contain 569 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 383
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 663
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 383
Contig length: 499
Avg. contig coverage: 1
Consensus contains:	A: 164	C: 120	G: 79	T: 134	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 499
Reads contain 497 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 384
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 662
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 384
Contig length: 497
Avg. contig coverage: 1
Consensus contains:	A: 142	C: 132	G: 94	T: 129	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 497
Reads contain 497 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 385
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 661
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 385
Contig length: 491
Avg. contig coverage: 1
Consensus contains:	A: 133	C: 127	G: 109	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 491
Reads contain 491 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 386
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 660
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 386
Contig length: 517
Avg. contig coverage: 1
Consensus contains:	A: 108	C: 139	G: 129	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 517
Reads contain 517 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 387
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 659
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 387
Contig length: 582
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 119	G: 152	T: 174	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 582
Reads contain 580 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 388
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 658
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 388
Contig length: 401
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 95	G: 57	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 401
Reads contain 401 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 389
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 657
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 389
Contig length: 349
Avg. contig coverage: 1
Consensus contains:	A: 77	C: 71	G: 91	T: 110	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 349
Reads contain 349 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 390
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 656
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 390
Contig length: 458
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 86	G: 106	T: 146	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 458
Reads contain 458 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 391
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 655
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 391
Contig length: 541
Avg. contig coverage: 1
Consensus contains:	A: 177	C: 128	G: 79	T: 157	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 541
Reads contain 541 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 392
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 654
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 392
Contig length: 377
Avg. contig coverage: 1
Consensus contains:	A: 80	C: 80	G: 92	T: 125	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 377
Reads contain 377 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 393
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 653
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 393
Contig length: 548
Avg. contig coverage: 1
Consensus contains:	A: 164	C: 136	G: 116	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 548
Reads contain 548 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 394
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 652
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 394
Contig length: 514
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 128	G: 89	T: 167	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 514
Reads contain 514 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 395
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 651
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 395
Contig length: 546
Avg. contig coverage: 1
Consensus contains:	A: 123	C: 132	G: 138	T: 153	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 546
Reads contain 546 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 396
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 650
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 396
Contig length: 516
Avg. contig coverage: 1
Consensus contains:	A: 178	C: 122	G: 80	T: 136	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 516
Reads contain 516 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 397
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 649
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 397
Contig length: 539
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 130	G: 112	T: 154	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 539
Reads contain 539 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 398
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 648
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 398
Contig length: 661
Avg. contig coverage: 1
Consensus contains:	A: 189	C: 124	G: 167	T: 181	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 661
Reads contain 661 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 399
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 647
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 399
Contig length: 563
Avg. contig coverage: 1
Consensus contains:	A: 115	C: 122	G: 148	T: 178	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 563
Reads contain 563 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 400
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 646
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 400
Contig length: 586
Avg. contig coverage: 1
Consensus contains:	A: 186	C: 135	G: 132	T: 133	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 586
Reads contain 586 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 401
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 645
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 401
Contig length: 469
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 73	G: 121	T: 161	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 469
Reads contain 469 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 402
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 644
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 402
Contig length: 386
Avg. contig coverage: 1
Consensus contains:	A: 108	C: 66	G: 70	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 386
Reads contain 386 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 403
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 643
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 403
Contig length: 525
Avg. contig coverage: 1
Consensus contains:	A: 142	C: 110	G: 139	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 525
Reads contain 525 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 404
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 642
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 404
Contig length: 552
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 117	G: 154	T: 148	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 552
Reads contain 551 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 405
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 641
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 405
Contig length: 355
Avg. contig coverage: 1
Consensus contains:	A: 80	C: 100	G: 74	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 355
Reads contain 355 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 406
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 640
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 406
Contig length: 325
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 68	G: 69	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 325
Reads contain 325 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 407
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 639
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 407
Contig length: 319
Avg. contig coverage: 1
Consensus contains:	A: 83	C: 54	G: 84	T: 98	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 319
Reads contain 319 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 408
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 638
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 408
Contig length: 113
Avg. contig coverage: 1
Consensus contains:	A: 30	C: 24	G: 23	T: 36	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 113
Reads contain 113 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 409
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 637
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 409
Contig length: 340
Avg. contig coverage: 1
Consensus contains:	A: 89	C: 66	G: 99	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 340
Reads contain 340 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 410
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 636
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 410
Contig length: 525
Avg. contig coverage: 1
Consensus contains:	A: 115	C: 170	G: 114	T: 126	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 525
Reads contain 525 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 411
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 635
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 411
Contig length: 578
Avg. contig coverage: 1
Consensus contains:	A: 169	C: 135	G: 101	T: 170	N: 3
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 578
Reads contain 575 bases, 3 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 412
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 634
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 412
Contig length: 351
Avg. contig coverage: 1
Consensus contains:	A: 88	C: 90	G: 71	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 351
Reads contain 351 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 413
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 633
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 413
Contig length: 453
Avg. contig coverage: 1
Consensus contains:	A: 93	C: 151	G: 93	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 453
Reads contain 453 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 414
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 632
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 414
Contig length: 348
Avg. contig coverage: 1
Consensus contains:	A: 92	C: 87	G: 65	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 348
Reads contain 348 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 415
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 631
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 415
Contig length: 438
Avg. contig coverage: 1
Consensus contains:	A: 108	C: 194	G: 31	T: 105	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 438
Reads contain 438 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 416
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 630
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 416
Contig length: 471
Avg. contig coverage: 1
Consensus contains:	A: 133	C: 114	G: 85	T: 139	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 471
Reads contain 471 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 417
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 629
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 417
Contig length: 507
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 130	G: 113	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 507
Reads contain 507 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 418
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 628
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 418
Contig length: 208
Avg. contig coverage: 1
Consensus contains:	A: 70	C: 28	G: 38	T: 72	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 208
Reads contain 208 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 419
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 627
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 419
Contig length: 292
Avg. contig coverage: 1
Consensus contains:	A: 75	C: 66	G: 73	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 292
Reads contain 292 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 420
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 626
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 420
Contig length: 538
Avg. contig coverage: 1
Consensus contains:	A: 162	C: 106	G: 135	T: 135	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 538
Reads contain 538 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 421
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 625
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 421
Contig length: 469
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 86	G: 117	T: 128	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 469
Reads contain 469 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 422
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 624
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 422
Contig length: 373
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 82	G: 84	T: 131	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 373
Reads contain 373 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 423
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 623
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 423
Contig length: 560
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 115	G: 129	T: 160	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 560
Reads contain 560 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 424
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 622
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 424
Contig length: 606
Avg. contig coverage: 1
Consensus contains:	A: 172	C: 118	G: 141	T: 175	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 606
Reads contain 606 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 425
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 621
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 425
Contig length: 599
Avg. contig coverage: 1
Consensus contains:	A: 162	C: 146	G: 137	T: 154	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 599
Reads contain 599 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 426
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 620
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 426
Contig length: 390
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 80	G: 107	T: 94	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 390
Reads contain 390 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 427
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 619
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 427
Contig length: 553
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 111	G: 169	T: 135	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 553
Reads contain 553 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 428
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 618
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 428
Contig length: 515
Avg. contig coverage: 1
Consensus contains:	A: 147	C: 106	G: 123	T: 139	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 515
Reads contain 515 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 429
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 617
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 429
Contig length: 552
Avg. contig coverage: 1
Consensus contains:	A: 123	C: 145	G: 141	T: 143	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 552
Reads contain 552 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 430
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 616
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 430
Contig length: 502
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 115	G: 131	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 502
Reads contain 502 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 431
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 615
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 431
Contig length: 561
Avg. contig coverage: 1
Consensus contains:	A: 169	C: 127	G: 138	T: 127	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 561
Reads contain 561 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 432
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 614
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 432
Contig length: 382
Avg. contig coverage: 1
Consensus contains:	A: 115	C: 83	G: 82	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 382
Reads contain 382 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 433
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 613
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 433
Contig length: 530
Avg. contig coverage: 1
Consensus contains:	A: 160	C: 125	G: 133	T: 111	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 530
Reads contain 529 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 434
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 612
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 434
Contig length: 408
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 137	G: 49	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 408
Reads contain 408 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 435
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 611
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 435
Contig length: 481
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 110	G: 124	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 481
Reads contain 481 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 436
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 610
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 436
Contig length: 433
Avg. contig coverage: 1
Consensus contains:	A: 150	C: 82	G: 64	T: 137	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 433
Reads contain 433 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 437
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 609
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 437
Contig length: 573
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 123	G: 146	T: 165	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 573
Reads contain 573 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 438
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 608
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 438
Contig length: 297
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 71	G: 52	T: 73	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 297
Reads contain 297 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 439
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 607
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 439
Contig length: 369
Avg. contig coverage: 1
Consensus contains:	A: 91	C: 87	G: 68	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 369
Reads contain 369 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 440
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 606
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 440
Contig length: 291
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 66	G: 54	T: 95	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 291
Reads contain 291 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 441
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 605
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 441
Contig length: 234
Avg. contig coverage: 1
Consensus contains:	A: 64	C: 41	G: 64	T: 65	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 234
Reads contain 234 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 442
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 604
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 442
Contig length: 519
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 115	G: 96	T: 167	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 519
Reads contain 519 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 443
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 603
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 443
Contig length: 641
Avg. contig coverage: 1
Consensus contains:	A: 181	C: 170	G: 127	T: 163	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 641
Reads contain 641 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 444
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 602
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 444
Contig length: 353
Avg. contig coverage: 1
Consensus contains:	A: 95	C: 59	G: 62	T: 136	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 353
Reads contain 352 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 445
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 601
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 445
Contig length: 545
Avg. contig coverage: 1
Consensus contains:	A: 150	C: 127	G: 124	T: 144	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 545
Reads contain 545 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 446
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 600
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 446
Contig length: 253
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 37	G: 60	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 253
Reads contain 253 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 447
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 599
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 447
Contig length: 607
Avg. contig coverage: 1
Consensus contains:	A: 171	C: 121	G: 153	T: 162	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 607
Reads contain 607 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 448
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 598
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 448
Contig length: 574
Avg. contig coverage: 1
Consensus contains:	A: 149	C: 136	G: 113	T: 176	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 574
Reads contain 574 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 449
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 597
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 449
Contig length: 170
Avg. contig coverage: 1
Consensus contains:	A: 54	C: 27	G: 5	T: 84	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 170
Reads contain 170 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 450
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 596
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 450
Contig length: 536
Avg. contig coverage: 1
Consensus contains:	A: 168	C: 108	G: 118	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 536
Reads contain 536 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 451
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 595
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 451
Contig length: 376
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 51	G: 71	T: 147	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 376
Reads contain 376 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 452
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 594
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 452
Contig length: 505
Avg. contig coverage: 1
Consensus contains:	A: 148	C: 131	G: 72	T: 154	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 505
Reads contain 505 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 453
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 593
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 453
Contig length: 452
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 91	G: 116	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 452
Reads contain 452 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 454
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 592
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 454
Contig length: 373
Avg. contig coverage: 1
Consensus contains:	A: 126	C: 91	G: 73	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 373
Reads contain 373 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 455
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 591
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 455
Contig length: 334
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 70	G: 51	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 334
Reads contain 334 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 456
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 590
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 456
Contig length: 489
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 112	G: 144	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 489
Reads contain 489 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 457
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 589
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 457
Contig length: 474
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 103	G: 129	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 474
Reads contain 474 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 458
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 588
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 458
Contig length: 550
Avg. contig coverage: 1
Consensus contains:	A: 158	C: 123	G: 122	T: 147	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 550
Reads contain 550 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 459
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 587
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 459
Contig length: 476
Avg. contig coverage: 1
Consensus contains:	A: 136	C: 110	G: 102	T: 128	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 476
Reads contain 476 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 460
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 586
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 460
Contig length: 283
Avg. contig coverage: 1
Consensus contains:	A: 74	C: 58	G: 76	T: 75	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 283
Reads contain 283 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 461
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 585
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 461
Contig length: 507
Avg. contig coverage: 1
Consensus contains:	A: 154	C: 120	G: 101	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 507
Reads contain 507 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 462
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 584
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 462
Contig length: 623
Avg. contig coverage: 1
Consensus contains:	A: 161	C: 164	G: 141	T: 157	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 623
Reads contain 623 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 463
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 583
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 463
Contig length: 603
Avg. contig coverage: 1
Consensus contains:	A: 172	C: 120	G: 123	T: 188	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 603
Reads contain 603 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 464
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 582
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 464
Contig length: 375
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 80	G: 45	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 375
Reads contain 375 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 465
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 581
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 465
Contig length: 364
Avg. contig coverage: 1
Consensus contains:	A: 88	C: 103	G: 68	T: 105	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 364
Reads contain 364 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 466
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 580
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 466
Contig length: 491
Avg. contig coverage: 1
Consensus contains:	A: 126	C: 114	G: 100	T: 151	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 491
Reads contain 491 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 467
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 579
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 467
Contig length: 375
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 110	G: 74	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 375
Reads contain 375 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 468
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 578
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 468
Contig length: 396
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 101	G: 94	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 396
Reads contain 396 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 469
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 577
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 469
Contig length: 249
Avg. contig coverage: 1
Consensus contains:	A: 65	C: 56	G: 57	T: 71	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 249
Reads contain 249 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 470
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 576
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 470
Contig length: 360
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 87	G: 87	T: 88	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 360
Reads contain 360 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 471
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 575
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 471
Contig length: 425
Avg. contig coverage: 1
Consensus contains:	A: 126	C: 99	G: 80	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 425
Reads contain 425 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 472
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 574
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 472
Contig length: 467
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 79	G: 152	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 467
Reads contain 467 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 473
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 573
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 473
Contig length: 253
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 42	G: 43	T: 66	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 253
Reads contain 253 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 474
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 572
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 474
Contig length: 205
Avg. contig coverage: 1
Consensus contains:	A: 56	C: 43	G: 62	T: 44	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 205
Reads contain 205 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 475
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 571
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 475
Contig length: 111
Avg. contig coverage: 1
Consensus contains:	A: 28	C: 16	G: 31	T: 36	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 111
Reads contain 111 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 476
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 570
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 476
Contig length: 407
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 66	G: 102	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 407
Reads contain 407 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 477
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 569
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 477
Contig length: 339
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 92	G: 73	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 339
Reads contain 339 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 478
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 568
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 478
Contig length: 327
Avg. contig coverage: 1
Consensus contains:	A: 67	C: 91	G: 82	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 327
Reads contain 327 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 479
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 567
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 479
Contig length: 238
Avg. contig coverage: 1
Consensus contains:	A: 62	C: 59	G: 52	T: 65	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 238
Reads contain 238 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 480
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 566
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 480
Contig length: 429
Avg. contig coverage: 1
Consensus contains:	A: 100	C: 116	G: 96	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 429
Reads contain 429 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 481
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 565
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 481
Contig length: 366
Avg. contig coverage: 1
Consensus contains:	A: 81	C: 80	G: 98	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 366
Reads contain 366 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 482
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 564
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 482
Contig length: 455
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 97	G: 105	T: 125	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 455
Reads contain 454 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 483
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 563
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 483
Contig length: 279
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 67	G: 45	T: 60	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 279
Reads contain 279 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 484
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 562
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 484
Contig length: 244
Avg. contig coverage: 1
Consensus contains:	A: 49	C: 79	G: 44	T: 72	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 244
Reads contain 244 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 485
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 561
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 485
Contig length: 289
Avg. contig coverage: 1
Consensus contains:	A: 67	C: 110	G: 54	T: 58	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 289
Reads contain 289 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 486
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 560
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 486
Contig length: 364
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 89	G: 59	T: 94	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 364
Reads contain 364 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 487
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 559
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 487
Contig length: 475
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 97	G: 90	T: 166	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 475
Reads contain 475 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 488
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 558
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 488
Contig length: 421
Avg. contig coverage: 1
Consensus contains:	A: 86	C: 123	G: 113	T: 99	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 421
Reads contain 421 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 489
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 557
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 489
Contig length: 333
Avg. contig coverage: 1
Consensus contains:	A: 96	C: 70	G: 72	T: 95	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 333
Reads contain 333 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 490
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 556
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 490
Contig length: 284
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 59	G: 45	T: 76	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 284
Reads contain 284 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 491
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 555
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 491
Contig length: 412
Avg. contig coverage: 1
Consensus contains:	A: 121	C: 102	G: 84	T: 105	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 412
Reads contain 412 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 492
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 554
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 492
Contig length: 314
Avg. contig coverage: 1
Consensus contains:	A: 80	C: 86	G: 59	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 314
Reads contain 314 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 493
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 553
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 493
Contig length: 230
Avg. contig coverage: 1
Consensus contains:	A: 64	C: 51	G: 49	T: 66	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 230
Reads contain 230 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 494
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 552
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 494
Contig length: 381
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 102	G: 80	T: 109	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 381
Reads contain 381 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 495
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 551
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 495
Contig length: 407
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 94	G: 84	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 407
Reads contain 407 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 496
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 550
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 496
Contig length: 225
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 39	G: 26	T: 53	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 225
Reads contain 225 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 497
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 549
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 497
Contig length: 349
Avg. contig coverage: 1
Consensus contains:	A: 84	C: 71	G: 90	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 349
Reads contain 349 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 498
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 548
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 498
Contig length: 218
Avg. contig coverage: 1
Consensus contains:	A: 69	C: 54	G: 25	T: 70	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 218
Reads contain 218 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 499
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 547
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 499
Contig length: 393
Avg. contig coverage: 1
Consensus contains:	A: 113	C: 112	G: 75	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 393
Reads contain 393 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 500
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 546
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 500
Contig length: 289
Avg. contig coverage: 1
Consensus contains:	A: 73	C: 53	G: 86	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 289
Reads contain 289 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 501
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 545
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 501
Contig length: 272
Avg. contig coverage: 1
Consensus contains:	A: 71	C: 58	G: 57	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 272
Reads contain 272 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 502
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 544
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 502
Contig length: 312
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 62	G: 63	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 312
Reads contain 312 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 503
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 543
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 503
Contig length: 316
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 73	G: 51	T: 88	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 316
Reads contain 316 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 504
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 542
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 504
Contig length: 133
Avg. contig coverage: 1
Consensus contains:	A: 29	C: 31	G: 31	T: 42	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 133
Reads contain 133 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 505
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 541
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 505
Contig length: 423
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 95	G: 86	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 423
Reads contain 423 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 506
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 540
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 506
Contig length: 208
Avg. contig coverage: 1
Consensus contains:	A: 62	C: 41	G: 50	T: 55	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 208
Reads contain 208 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 507
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 539
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 507
Contig length: 249
Avg. contig coverage: 1
Consensus contains:	A: 69	C: 65	G: 59	T: 56	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 249
Reads contain 249 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 508
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 538
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 508
Contig length: 379
Avg. contig coverage: 1
Consensus contains:	A: 113	C: 87	G: 115	T: 64	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 379
Reads contain 379 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 509
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 537
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 509
Contig length: 463
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 109	G: 118	T: 154	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 463
Reads contain 463 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 510
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 536
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 510
Contig length: 479
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 108	G: 119	T: 112	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 479
Reads contain 478 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 511
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 535
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 511
Contig length: 316
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 78	G: 58	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 316
Reads contain 316 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 512
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 534
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 512
Contig length: 533
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 173	G: 113	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 533
Reads contain 533 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 513
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 533
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 513
Contig length: 412
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 99	G: 110	T: 92	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 412
Reads contain 412 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 514
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 532
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 514
Contig length: 544
Avg. contig coverage: 1
Consensus contains:	A: 144	C: 132	G: 133	T: 135	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 544
Reads contain 544 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 515
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 531
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 515
Contig length: 531
Avg. contig coverage: 1
Consensus contains:	A: 155	C: 114	G: 114	T: 148	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 531
Reads contain 531 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 516
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 530
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 516
Contig length: 474
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 123	G: 125	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 474
Reads contain 474 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 517
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 529
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 517
Contig length: 201
Avg. contig coverage: 1
Consensus contains:	A: 60	C: 47	G: 38	T: 56	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 201
Reads contain 201 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 518
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 528
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 518
Contig length: 371
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 90	G: 82	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 371
Reads contain 371 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 519
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 527
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 519
Contig length: 445
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 88	G: 130	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 445
Reads contain 445 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 520
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 526
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 520
Contig length: 534
Avg. contig coverage: 1
Consensus contains:	A: 154	C: 137	G: 126	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 534
Reads contain 534 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 521
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 525
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 521
Contig length: 545
Avg. contig coverage: 1
Consensus contains:	A: 129	C: 149	G: 122	T: 144	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 545
Reads contain 544 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 522
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 524
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 522
Contig length: 543
Avg. contig coverage: 1
Consensus contains:	A: 164	C: 148	G: 102	T: 129	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 543
Reads contain 543 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 523
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 523
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 523
Contig length: 328
Avg. contig coverage: 1
Consensus contains:	A: 73	C: 87	G: 86	T: 82	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 328
Reads contain 328 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 524
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 522
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 524
Contig length: 459
Avg. contig coverage: 1
Consensus contains:	A: 123	C: 137	G: 78	T: 121	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 459
Reads contain 459 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 525
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 521
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 525
Contig length: 359
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 103	G: 43	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 359
Reads contain 359 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 526
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 520
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 526
Contig length: 431
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 126	G: 89	T: 109	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 431
Reads contain 431 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 527
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 519
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 527
Contig length: 198
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 34	G: 27	T: 55	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 198
Reads contain 198 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 528
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 518
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 528
Contig length: 476
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 98	G: 136	T: 125	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 476
Reads contain 476 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 529
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 517
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 529
Contig length: 319
Avg. contig coverage: 1
Consensus contains:	A: 88	C: 70	G: 83	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 319
Reads contain 319 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 530
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 516
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 530
Contig length: 512
Avg. contig coverage: 1
Consensus contains:	A: 158	C: 103	G: 107	T: 144	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 512
Reads contain 512 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 531
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 515
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 531
Contig length: 475
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 101	G: 94	T: 143	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 475
Reads contain 475 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 532
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 514
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 532
Contig length: 494
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 127	G: 146	T: 84	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 494
Reads contain 494 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 533
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 513
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 533
Contig length: 379
Avg. contig coverage: 1
Consensus contains:	A: 88	C: 122	G: 85	T: 84	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 379
Reads contain 379 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 534
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 512
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 534
Contig length: 282
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 60	G: 56	T: 76	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 282
Reads contain 282 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 535
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 511
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 535
Contig length: 288
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 64	G: 29	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 288
Reads contain 288 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 536
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 510
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 536
Contig length: 437
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 109	G: 90	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 437
Reads contain 437 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 537
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 509
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 537
Contig length: 351
Avg. contig coverage: 1
Consensus contains:	A: 81	C: 95	G: 108	T: 67	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 351
Reads contain 351 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 538
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 508
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 538
Contig length: 497
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 132	G: 91	T: 139	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 497
Reads contain 497 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 539
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 507
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 539
Contig length: 332
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 75	G: 55	T: 88	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 332
Reads contain 332 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 540
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 506
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 540
Contig length: 448
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 80	G: 137	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 448
Reads contain 448 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 541
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 505
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 541
Contig length: 496
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 103	G: 137	T: 126	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 496
Reads contain 496 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 542
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 504
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 542
Contig length: 463
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 104	G: 106	T: 135	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 463
Reads contain 463 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 543
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 503
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 543
Contig length: 432
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 63	G: 127	T: 136	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 432
Reads contain 432 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 544
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 502
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 544
Contig length: 595
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 124	G: 169	T: 156	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 595
Reads contain 595 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 545
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 501
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 545
Contig length: 364
Avg. contig coverage: 1
Consensus contains:	A: 113	C: 84	G: 78	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 364
Reads contain 364 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 546
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 500
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 546
Contig length: 340
Avg. contig coverage: 1
Consensus contains:	A: 93	C: 66	G: 94	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 340
Reads contain 340 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 547
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 499
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 547
Contig length: 273
Avg. contig coverage: 1
Consensus contains:	A: 63	C: 55	G: 79	T: 76	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 273
Reads contain 273 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 548
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 498
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 548
Contig length: 548
Avg. contig coverage: 1
Consensus contains:	A: 136	C: 81	G: 118	T: 213	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 548
Reads contain 548 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 549
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 497
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 549
Contig length: 411
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 78	G: 114	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 411
Reads contain 411 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 550
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 496
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 550
Contig length: 179
Avg. contig coverage: 1
Consensus contains:	A: 42	C: 52	G: 44	T: 41	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 179
Reads contain 179 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 551
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 495
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 551
Contig length: 339
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 81	G: 72	T: 88	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 339
Reads contain 339 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 552
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 494
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 552
Contig length: 442
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 107	G: 103	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 442
Reads contain 442 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 553
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 493
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 553
Contig length: 356
Avg. contig coverage: 1
Consensus contains:	A: 86	C: 96	G: 103	T: 71	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 356
Reads contain 356 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 554
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 492
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 554
Contig length: 400
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 81	G: 96	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 400
Reads contain 400 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 555
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 491
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 555
Contig length: 125
Avg. contig coverage: 1
Consensus contains:	A: 36	C: 29	G: 23	T: 37	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 125
Reads contain 125 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 556
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 490
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 556
Contig length: 385
Avg. contig coverage: 1
Consensus contains:	A: 108	C: 75	G: 97	T: 105	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 385
Reads contain 385 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 557
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 489
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 557
Contig length: 366
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 90	G: 57	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 366
Reads contain 366 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 558
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 488
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 558
Contig length: 411
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 85	G: 107	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 411
Reads contain 411 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 559
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 487
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 559
Contig length: 353
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 88	G: 35	T: 74	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 353
Reads contain 353 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 560
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 486
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 560
Contig length: 439
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 112	G: 97	T: 125	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 439
Reads contain 439 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 561
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 485
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 561
Contig length: 475
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 117	G: 97	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 475
Reads contain 475 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 562
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 484
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 562
Contig length: 488
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 124	G: 132	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 488
Reads contain 488 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 563
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 483
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 563
Contig length: 349
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 89	G: 64	T: 65	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 349
Reads contain 349 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 564
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 482
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 564
Contig length: 431
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 105	G: 76	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 431
Reads contain 431 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 565
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 481
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 565
Contig length: 396
Avg. contig coverage: 1
Consensus contains:	A: 93	C: 79	G: 118	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 396
Reads contain 396 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 566
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 480
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 566
Contig length: 294
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 61	G: 47	T: 84	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 294
Reads contain 294 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 567
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 479
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 567
Contig length: 414
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 110	G: 66	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 414
Reads contain 414 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 568
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 478
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 568
Contig length: 451
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 84	G: 109	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 451
Reads contain 451 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 569
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 477
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 569
Contig length: 467
Avg. contig coverage: 1
Consensus contains:	A: 121	C: 100	G: 133	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 467
Reads contain 467 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 570
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 476
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 570
Contig length: 426
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 128	G: 87	T: 95	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 426
Reads contain 426 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 571
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 475
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 571
Contig length: 419
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 111	G: 89	T: 105	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 419
Reads contain 419 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 572
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 474
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 572
Contig length: 216
Avg. contig coverage: 1
Consensus contains:	A: 47	C: 72	G: 41	T: 56	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 216
Reads contain 216 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 573
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 473
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 573
Contig length: 469
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 107	G: 125	T: 125	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 469
Reads contain 469 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 574
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 472
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 574
Contig length: 431
Avg. contig coverage: 1
Consensus contains:	A: 95	C: 107	G: 120	T: 109	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 431
Reads contain 431 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 575
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 471
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 575
Contig length: 448
Avg. contig coverage: 1
Consensus contains:	A: 144	C: 98	G: 89	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 448
Reads contain 448 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 576
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 470
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 576
Contig length: 195
Avg. contig coverage: 1
Consensus contains:	A: 88	C: 37	G: 17	T: 53	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 195
Reads contain 195 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 577
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 469
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 577
Contig length: 130
Avg. contig coverage: 1
Consensus contains:	A: 30	C: 27	G: 40	T: 33	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 130
Reads contain 130 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 578
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 468
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 578
Contig length: 413
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 95	G: 94	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 413
Reads contain 413 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 579
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 467
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 579
Contig length: 421
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 112	G: 91	T: 88	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 421
Reads contain 421 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 580
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 466
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 580
Contig length: 323
Avg. contig coverage: 1
Consensus contains:	A: 71	C: 115	G: 74	T: 63	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 323
Reads contain 323 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 581
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 465
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 581
Contig length: 206
Avg. contig coverage: 1
Consensus contains:	A: 66	C: 52	G: 45	T: 43	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 206
Reads contain 206 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 582
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 464
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 582
Contig length: 400
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 85	G: 87	T: 120	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 400
Reads contain 399 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 583
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 463
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 583
Contig length: 440
Avg. contig coverage: 1
Consensus contains:	A: 152	C: 87	G: 95	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 440
Reads contain 440 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 584
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 462
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 584
Contig length: 422
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 70	G: 96	T: 128	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 422
Reads contain 422 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 585
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 461
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 585
Contig length: 492
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 82	G: 112	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 492
Reads contain 492 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 586
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 460
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 586
Contig length: 347
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 57	G: 116	T: 80	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 347
Reads contain 347 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 587
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 459
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 587
Contig length: 446
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 100	G: 117	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 446
Reads contain 446 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 588
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 458
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 588
Contig length: 323
Avg. contig coverage: 1
Consensus contains:	A: 72	C: 94	G: 78	T: 79	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 323
Reads contain 323 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 589
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 457
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 589
Contig length: 205
Avg. contig coverage: 1
Consensus contains:	A: 46	C: 57	G: 55	T: 47	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 205
Reads contain 205 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 590
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 456
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 590
Contig length: 472
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 101	G: 101	T: 140	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 472
Reads contain 470 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 591
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 455
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 591
Contig length: 550
Avg. contig coverage: 1
Consensus contains:	A: 133	C: 126	G: 145	T: 145	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 550
Reads contain 549 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 592
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 454
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 592
Contig length: 548
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 155	G: 115	T: 140	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 548
Reads contain 547 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 593
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 453
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 593
Contig length: 390
Avg. contig coverage: 1
Consensus contains:	A: 93	C: 102	G: 92	T: 103	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 390
Reads contain 390 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 594
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 452
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 594
Contig length: 197
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 46	G: 17	T: 58	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 197
Reads contain 197 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 595
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 451
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 595
Contig length: 353
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 86	G: 74	T: 94	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 353
Reads contain 353 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 596
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 450
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 596
Contig length: 184
Avg. contig coverage: 1
Consensus contains:	A: 47	C: 46	G: 50	T: 41	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 184
Reads contain 184 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 597
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 449
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 597
Contig length: 133
Avg. contig coverage: 1
Consensus contains:	A: 45	C: 21	G: 31	T: 36	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 133
Reads contain 133 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 598
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 448
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 598
Contig length: 365
Avg. contig coverage: 1
Consensus contains:	A: 96	C: 81	G: 90	T: 96	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 365
Reads contain 363 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 599
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 447
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 599
Contig length: 398
Avg. contig coverage: 1
Consensus contains:	A: 92	C: 103	G: 83	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 398
Reads contain 398 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 600
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 446
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 600
Contig length: 467
Avg. contig coverage: 1
Consensus contains:	A: 134	C: 98	G: 115	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 467
Reads contain 467 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 601
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 445
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 601
Contig length: 376
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 98	G: 74	T: 121	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 376
Reads contain 375 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 602
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 444
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 602
Contig length: 343
Avg. contig coverage: 1
Consensus contains:	A: 115	C: 75	G: 57	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 343
Reads contain 343 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 603
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 443
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 603
Contig length: 99
Avg. contig coverage: 1
Consensus contains:	A: 40	C: 15	G: 19	T: 25	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 99
Reads contain 99 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 604
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 442
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 604
Contig length: 253
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 64	G: 46	T: 64	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 253
Reads contain 253 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 605
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 441
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 605
Contig length: 196
Avg. contig coverage: 1
Consensus contains:	A: 45	C: 54	G: 52	T: 45	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 196
Reads contain 196 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 606
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 440
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 606
Contig length: 387
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 79	G: 101	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 387
Reads contain 387 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 607
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 439
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 607
Contig length: 307
Avg. contig coverage: 1
Consensus contains:	A: 78	C: 80	G: 53	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 307
Reads contain 307 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 608
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 438
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 608
Contig length: 430
Avg. contig coverage: 1
Consensus contains:	A: 121	C: 85	G: 105	T: 117	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 430
Reads contain 428 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 609
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 437
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 609
Contig length: 403
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 95	G: 82	T: 114	N: 5
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 403
Reads contain 398 bases, 5 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 610
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 436
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 610
Contig length: 419
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 105	G: 101	T: 95	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 419
Reads contain 419 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 611
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 435
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 611
Contig length: 178
Avg. contig coverage: 1
Consensus contains:	A: 61	C: 39	G: 31	T: 47	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 178
Reads contain 178 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 612
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 434
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 612
Contig length: 113
Avg. contig coverage: 1
Consensus contains:	A: 23	C: 19	G: 40	T: 31	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 113
Reads contain 113 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 613
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 433
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 613
Contig length: 356
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 69	G: 101	T: 92	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 356
Reads contain 356 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 614
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 432
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 614
Contig length: 357
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 63	G: 75	T: 120	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 357
Reads contain 356 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 615
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 431
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 615
Contig length: 444
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 104	G: 87	T: 133	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 444
Reads contain 444 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 616
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 430
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 616
Contig length: 488
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 113	G: 107	T: 149	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 488
Reads contain 486 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 617
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 429
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 617
Contig length: 228
Avg. contig coverage: 1
Consensus contains:	A: 61	C: 49	G: 52	T: 66	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 228
Reads contain 228 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 618
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 428
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 618
Contig length: 444
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 102	G: 109	T: 121	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 444
Reads contain 444 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 619
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 427
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 619
Contig length: 393
Avg. contig coverage: 1
Consensus contains:	A: 80	C: 102	G: 104	T: 105	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 393
Reads contain 391 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 620
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 426
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 620
Contig length: 377
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 72	G: 85	T: 119	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 377
Reads contain 375 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 621
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 425
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 621
Contig length: 354
Avg. contig coverage: 1
Consensus contains:	A: 69	C: 67	G: 129	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 354
Reads contain 354 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 622
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 424
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 622
Contig length: 124
Avg. contig coverage: 1
Consensus contains:	A: 50	C: 22	G: 24	T: 28	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 124
Reads contain 124 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 623
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 423
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 623
Contig length: 322
Avg. contig coverage: 1
Consensus contains:	A: 75	C: 63	G: 94	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 322
Reads contain 322 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 624
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 422
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 624
Contig length: 188
Avg. contig coverage: 1
Consensus contains:	A: 49	C: 44	G: 54	T: 41	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 188
Reads contain 188 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 625
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 421
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 625
Contig length: 123
Avg. contig coverage: 1
Consensus contains:	A: 23	C: 43	G: 29	T: 28	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 123
Reads contain 123 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 626
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 420
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 626
Contig length: 399
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 90	G: 81	T: 109	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 399
Reads contain 398 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 627
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 419
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 627
Contig length: 488
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 122	G: 92	T: 163	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 488
Reads contain 487 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 628
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 418
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 628
Contig length: 506
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 144	G: 110	T: 133	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 506
Reads contain 505 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 629
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 417
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 629
Contig length: 216
Avg. contig coverage: 1
Consensus contains:	A: 53	C: 36	G: 81	T: 46	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 216
Reads contain 216 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 630
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 416
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 630
Contig length: 444
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 125	G: 77	T: 126	N: 4
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 444
Reads contain 440 bases, 4 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 631
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 415
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 631
Contig length: 241
Avg. contig coverage: 1
Consensus contains:	A: 57	C: 58	G: 64	T: 62	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 241
Reads contain 241 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 632
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 414
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 632
Contig length: 443
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 119	G: 88	T: 128	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 443
Reads contain 442 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 633
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 413
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 633
Contig length: 342
Avg. contig coverage: 1
Consensus contains:	A: 93	C: 82	G: 74	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 342
Reads contain 342 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 634
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 412
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 634
Contig length: 391
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 99	G: 99	T: 102	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 391
Reads contain 390 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 635
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 411
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 635
Contig length: 428
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 88	G: 89	T: 127	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 428
Reads contain 428 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 636
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 410
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 636
Contig length: 367
Avg. contig coverage: 1
Consensus contains:	A: 81	C: 89	G: 101	T: 95	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 367
Reads contain 366 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 637
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 409
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 637
Contig length: 443
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 109	G: 91	T: 138	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 443
Reads contain 441 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 638
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 408
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 638
Contig length: 278
Avg. contig coverage: 1
Consensus contains:	A: 115	C: 58	G: 27	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 278
Reads contain 278 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 639
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 407
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 639
Contig length: 224
Avg. contig coverage: 1
Consensus contains:	A: 57	C: 56	G: 42	T: 69	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 224
Reads contain 224 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 640
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 406
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 640
Contig length: 452
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 119	G: 106	T: 116	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 452
Reads contain 451 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 641
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 405
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 641
Contig length: 386
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 94	G: 96	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 386
Reads contain 386 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 642
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 404
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 642
Contig length: 304
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 58	G: 52	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 304
Reads contain 304 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 643
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 403
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 643
Contig length: 383
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 94	G: 96	T: 86	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 383
Reads contain 381 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 644
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 402
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 644
Contig length: 186
Avg. contig coverage: 1
Consensus contains:	A: 84	C: 40	G: 21	T: 41	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 186
Reads contain 186 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 645
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 401
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 645
Contig length: 475
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 77	G: 156	T: 138	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 475
Reads contain 474 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 646
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 400
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 646
Contig length: 128
Avg. contig coverage: 1
Consensus contains:	A: 29	C: 37	G: 32	T: 30	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 128
Reads contain 128 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 647
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 399
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 647
Contig length: 506
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 96	G: 124	T: 138	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 506
Reads contain 504 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 648
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 398
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 648
Contig length: 528
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 144	G: 78	T: 166	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 528
Reads contain 526 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 649
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 397
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 649
Contig length: 272
Avg. contig coverage: 1
Consensus contains:	A: 54	C: 72	G: 57	T: 88	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 272
Reads contain 271 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 650
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 396
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 650
Contig length: 322
Avg. contig coverage: 1
Consensus contains:	A: 73	C: 97	G: 56	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 322
Reads contain 322 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 651
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 395
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 651
Contig length: 224
Avg. contig coverage: 1
Consensus contains:	A: 55	C: 57	G: 51	T: 61	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 224
Reads contain 224 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 652
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 394
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 652
Contig length: 220
Avg. contig coverage: 1
Consensus contains:	A: 51	C: 56	G: 50	T: 63	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 220
Reads contain 220 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 653
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 393
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 653
Contig length: 412
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 102	G: 80	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 412
Reads contain 412 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 654
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 392
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 654
Contig length: 223
Avg. contig coverage: 1
Consensus contains:	A: 56	C: 43	G: 67	T: 57	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 223
Reads contain 223 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 655
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 391
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 655
Contig length: 408
Avg. contig coverage: 1
Consensus contains:	A: 167	C: 100	G: 49	T: 92	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 408
Reads contain 408 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 656
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 390
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 656
Contig length: 413
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 78	G: 110	T: 121	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 413
Reads contain 412 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 657
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 389
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 657
Contig length: 278
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 64	G: 35	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 278
Reads contain 278 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 658
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 388
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 658
Contig length: 190
Avg. contig coverage: 1
Consensus contains:	A: 55	C: 60	G: 43	T: 32	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 190
Reads contain 190 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 659
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 387
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 659
Contig length: 213
Avg. contig coverage: 1
Consensus contains:	A: 50	C: 88	G: 26	T: 49	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 213
Reads contain 213 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 660
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 386
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 660
Contig length: 445
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 113	G: 90	T: 135	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 445
Reads contain 445 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 661
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 385
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 661
Contig length: 323
Avg. contig coverage: 1
Consensus contains:	A: 93	C: 58	G: 92	T: 79	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 323
Reads contain 322 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 662
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 384
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 662
Contig length: 413
Avg. contig coverage: 1
Consensus contains:	A: 108	C: 108	G: 111	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 413
Reads contain 413 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 663
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 383
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 663
Contig length: 287
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 74	G: 68	T: 65	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 287
Reads contain 286 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 664
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 382
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 664
Contig length: 191
Avg. contig coverage: 1
Consensus contains:	A: 52	C: 46	G: 39	T: 54	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 191
Reads contain 191 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 665
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 381
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 665
Contig length: 115
Avg. contig coverage: 1
Consensus contains:	A: 33	C: 38	G: 19	T: 25	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 115
Reads contain 115 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 666
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 380
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 666
Contig length: 345
Avg. contig coverage: 1
Consensus contains:	A: 84	C: 56	G: 85	T: 119	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 345
Reads contain 344 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 667
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 379
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 667
Contig length: 461
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 116	G: 81	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 461
Reads contain 461 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 668
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 378
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 668
Contig length: 300
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 74	G: 44	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 300
Reads contain 300 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 669
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 377
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 669
Contig length: 336
Avg. contig coverage: 1
Consensus contains:	A: 71	C: 82	G: 76	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 336
Reads contain 336 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 670
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 376
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 670
Contig length: 195
Avg. contig coverage: 1
Consensus contains:	A: 56	C: 61	G: 33	T: 45	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 195
Reads contain 195 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 671
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 375
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 671
Contig length: 398
Avg. contig coverage: 1
Consensus contains:	A: 92	C: 81	G: 117	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 398
Reads contain 398 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 672
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 374
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 672
Contig length: 203
Avg. contig coverage: 1
Consensus contains:	A: 57	C: 50	G: 43	T: 53	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 203
Reads contain 203 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 673
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 373
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 673
Contig length: 258
Avg. contig coverage: 1
Consensus contains:	A: 63	C: 65	G: 55	T: 75	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 258
Reads contain 258 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 674
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 372
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 674
Contig length: 415
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 90	G: 113	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 415
Reads contain 415 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 675
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 371
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 675
Contig length: 101
Avg. contig coverage: 1
Consensus contains:	A: 24	C: 41	G: 14	T: 22	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 101
Reads contain 101 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 676
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 370
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 676
Contig length: 206
Avg. contig coverage: 1
Consensus contains:	A: 55	C: 47	G: 39	T: 65	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 206
Reads contain 206 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 677
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 369
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 677
Contig length: 415
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 82	G: 100	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 415
Reads contain 415 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 678
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 368
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 678
Contig length: 250
Avg. contig coverage: 1
Consensus contains:	A: 62	C: 65	G: 56	T: 67	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 250
Reads contain 250 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 679
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 367
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 679
Contig length: 214
Avg. contig coverage: 1
Consensus contains:	A: 50	C: 45	G: 66	T: 53	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 214
Reads contain 214 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 680
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 366
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 680
Contig length: 152
Avg. contig coverage: 1
Consensus contains:	A: 37	C: 41	G: 39	T: 35	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 152
Reads contain 152 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 681
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 365
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 681
Contig length: 257
Avg. contig coverage: 1
Consensus contains:	A: 89	C: 53	G: 43	T: 72	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 257
Reads contain 257 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 682
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 364
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 682
Contig length: 446
Avg. contig coverage: 1
Consensus contains:	A: 126	C: 75	G: 127	T: 117	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 446
Reads contain 445 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 683
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 363
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 683
Contig length: 227
Avg. contig coverage: 1
Consensus contains:	A: 53	C: 47	G: 64	T: 63	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 227
Reads contain 227 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 684
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 362
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 684
Contig length: 427
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 96	G: 77	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 427
Reads contain 427 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 685
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 361
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 685
Contig length: 531
Avg. contig coverage: 1
Consensus contains:	A: 150	C: 142	G: 123	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 531
Reads contain 531 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 686
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 360
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 686
Contig length: 396
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 93	G: 74	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 396
Reads contain 396 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 687
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 359
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 687
Contig length: 493
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 125	G: 82	T: 130	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 493
Reads contain 493 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 688
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 358
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 688
Contig length: 403
Avg. contig coverage: 1
Consensus contains:	A: 92	C: 109	G: 86	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 403
Reads contain 403 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 689
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 357
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 689
Contig length: 518
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 128	G: 115	T: 144	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 518
Reads contain 518 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 690
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 356
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 690
Contig length: 506
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 79	G: 122	T: 162	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 506
Reads contain 506 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 691
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 355
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 691
Contig length: 454
Avg. contig coverage: 1
Consensus contains:	A: 115	C: 104	G: 100	T: 134	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 454
Reads contain 453 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 692
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 354
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 692
Contig length: 328
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 78	G: 45	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 328
Reads contain 328 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 693
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 353
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 693
Contig length: 390
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 69	G: 108	T: 107	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 390
Reads contain 389 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 694
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 352
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 694
Contig length: 323
Avg. contig coverage: 1
Consensus contains:	A: 61	C: 86	G: 82	T: 94	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 323
Reads contain 323 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 695
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 351
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 695
Contig length: 502
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 89	G: 135	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 502
Reads contain 502 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 696
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 350
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 696
Contig length: 404
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 88	G: 103	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 404
Reads contain 404 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 697
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 349
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 697
Contig length: 353
Avg. contig coverage: 1
Consensus contains:	A: 63	C: 79	G: 101	T: 110	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 353
Reads contain 353 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 698
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 348
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 698
Contig length: 444
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 87	G: 94	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 444
Reads contain 444 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 699
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 347
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 699
Contig length: 505
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 92	G: 120	T: 175	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 505
Reads contain 505 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 700
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 346
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 700
Contig length: 335
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 65	G: 80	T: 91	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 335
Reads contain 335 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 701
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 345
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 701
Contig length: 312
Avg. contig coverage: 1
Consensus contains:	A: 77	C: 77	G: 73	T: 85	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 312
Reads contain 312 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 702
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 344
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 702
Contig length: 370
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 110	G: 91	T: 74	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 370
Reads contain 369 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 703
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 343
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 703
Contig length: 511
Avg. contig coverage: 1
Consensus contains:	A: 154	C: 103	G: 99	T: 154	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 511
Reads contain 510 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 704
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 342
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 704
Contig length: 486
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 120	G: 120	T: 119	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 486
Reads contain 484 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 705
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 341
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 705
Contig length: 458
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 97	G: 127	T: 116	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 458
Reads contain 457 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 706
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 340
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 706
Contig length: 425
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 154	G: 89	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 425
Reads contain 425 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 707
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 339
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 707
Contig length: 363
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 80	G: 76	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 363
Reads contain 363 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 708
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 338
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 708
Contig length: 206
Avg. contig coverage: 1
Consensus contains:	A: 47	C: 55	G: 52	T: 52	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 206
Reads contain 206 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 709
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 337
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 709
Contig length: 469
Avg. contig coverage: 1
Consensus contains:	A: 93	C: 131	G: 119	T: 126	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 469
Reads contain 469 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 710
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 336
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 710
Contig length: 86
Avg. contig coverage: 1
Consensus contains:	A: 36	C: 17	G: 12	T: 21	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 86
Reads contain 86 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 711
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 335
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 711
Contig length: 388
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 100	G: 71	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 388
Reads contain 388 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 712
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 334
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 712
Contig length: 325
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 81	G: 92	T: 76	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 325
Reads contain 325 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 713
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 333
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 713
Contig length: 96
Avg. contig coverage: 1
Consensus contains:	A: 24	C: 16	G: 25	T: 31	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 96
Reads contain 96 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 714
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 332
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 714
Contig length: 486
Avg. contig coverage: 1
Consensus contains:	A: 126	C: 117	G: 114	T: 128	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 486
Reads contain 485 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 715
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 331
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 715
Contig length: 394
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 65	G: 93	T: 119	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 394
Reads contain 394 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 716
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 330
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 716
Contig length: 356
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 87	G: 69	T: 94	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 356
Reads contain 356 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 717
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 329
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 717
Contig length: 467
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 142	G: 99	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 467
Reads contain 467 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 718
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 328
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 718
Contig length: 409
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 83	G: 84	T: 126	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 409
Reads contain 409 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 719
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 327
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 719
Contig length: 481
Avg. contig coverage: 1
Consensus contains:	A: 171	C: 107	G: 72	T: 131	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 481
Reads contain 481 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 720
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 326
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 720
Contig length: 313
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 56	G: 81	T: 82	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 313
Reads contain 313 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 721
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 325
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 721
Contig length: 216
Avg. contig coverage: 1
Consensus contains:	A: 57	C: 40	G: 58	T: 61	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 216
Reads contain 216 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 722
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 324
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 722
Contig length: 349
Avg. contig coverage: 1
Consensus contains:	A: 121	C: 77	G: 51	T: 100	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 349
Reads contain 349 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 723
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 323
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 723
Contig length: 416
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 73	G: 84	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 416
Reads contain 416 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 724
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 322
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 724
Contig length: 447
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 98	G: 104	T: 110	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 447
Reads contain 447 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 725
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 321
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 725
Contig length: 485
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 96	G: 140	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 485
Reads contain 485 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 726
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 320
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 726
Contig length: 108
Avg. contig coverage: 1
Consensus contains:	A: 35	C: 2	G: 45	T: 26	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 108
Reads contain 108 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 727
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 319
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 727
Contig length: 489
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 136	G: 89	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 489
Reads contain 489 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 728
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 318
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 728
Contig length: 536
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 122	G: 122	T: 151	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 536
Reads contain 536 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 729
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 317
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 729
Contig length: 332
Avg. contig coverage: 1
Consensus contains:	A: 91	C: 80	G: 75	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 332
Reads contain 332 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 730
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 316
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 730
Contig length: 457
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 106	G: 104	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 457
Reads contain 457 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 731
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 315
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 731
Contig length: 510
Avg. contig coverage: 1
Consensus contains:	A: 123	C: 125	G: 138	T: 123	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 510
Reads contain 509 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 732
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 314
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 732
Contig length: 420
Avg. contig coverage: 1
Consensus contains:	A: 95	C: 68	G: 143	T: 114	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 420
Reads contain 420 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 733
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 313
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 733
Contig length: 539
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 101	G: 142	T: 157	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 539
Reads contain 539 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 734
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 312
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 734
Contig length: 431
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 82	G: 109	T: 126	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 431
Reads contain 431 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 735
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 311
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 735
Contig length: 399
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 103	G: 75	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 399
Reads contain 399 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 736
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 310
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 736
Contig length: 541
Avg. contig coverage: 1
Consensus contains:	A: 190	C: 98	G: 137	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 541
Reads contain 541 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 737
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 309
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 737
Contig length: 343
Avg. contig coverage: 1
Consensus contains:	A: 65	C: 95	G: 93	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 343
Reads contain 343 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 738
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 308
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 738
Contig length: 461
Avg. contig coverage: 1
Consensus contains:	A: 133	C: 123	G: 90	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 461
Reads contain 461 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 739
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 307
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 739
Contig length: 437
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 100	G: 88	T: 129	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 437
Reads contain 437 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 740
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 306
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 740
Contig length: 424
Avg. contig coverage: 1
Consensus contains:	A: 121	C: 74	G: 93	T: 136	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 424
Reads contain 424 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 741
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 305
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 741
Contig length: 244
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 43	G: 47	T: 47	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 244
Reads contain 244 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 742
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 304
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 742
Contig length: 503
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 125	G: 121	T: 113	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 503
Reads contain 502 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 743
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 303
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 743
Contig length: 478
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 160	G: 92	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 478
Reads contain 478 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 744
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 302
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 744
Contig length: 521
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 89	G: 130	T: 146	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 521
Reads contain 521 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 745
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 301
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 745
Contig length: 419
Avg. contig coverage: 1
Consensus contains:	A: 87	C: 91	G: 122	T: 119	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 419
Reads contain 419 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 746
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 300
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 746
Contig length: 465
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 81	G: 151	T: 131	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 465
Reads contain 465 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 747
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 299
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 747
Contig length: 535
Avg. contig coverage: 1
Consensus contains:	A: 149	C: 116	G: 116	T: 154	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 535
Reads contain 535 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 748
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 298
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 748
Contig length: 158
Avg. contig coverage: 1
Consensus contains:	A: 32	C: 39	G: 40	T: 47	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 158
Reads contain 158 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 749
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 297
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 749
Contig length: 353
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 63	G: 88	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 353
Reads contain 353 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 750
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 296
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 750
Contig length: 400
Avg. contig coverage: 1
Consensus contains:	A: 89	C: 84	G: 98	T: 129	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 400
Reads contain 400 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 751
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 295
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 751
Contig length: 482
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 97	G: 101	T: 165	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 482
Reads contain 482 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 752
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 294
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 752
Contig length: 471
Avg. contig coverage: 1
Consensus contains:	A: 152	C: 93	G: 115	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 471
Reads contain 471 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 753
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 293
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 753
Contig length: 377
Avg. contig coverage: 1
Consensus contains:	A: 74	C: 88	G: 99	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 377
Reads contain 377 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 754
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 292
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 754
Contig length: 462
Avg. contig coverage: 1
Consensus contains:	A: 161	C: 110	G: 70	T: 121	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 462
Reads contain 462 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 755
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 291
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 755
Contig length: 427
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 53	G: 126	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 427
Reads contain 427 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 756
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 290
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 756
Contig length: 468
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 94	G: 114	T: 128	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 468
Reads contain 468 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 757
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 289
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 757
Contig length: 483
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 152	G: 95	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 483
Reads contain 483 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 758
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 288
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 758
Contig length: 529
Avg. contig coverage: 1
Consensus contains:	A: 165	C: 112	G: 148	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 529
Reads contain 529 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 759
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 287
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 759
Contig length: 372
Avg. contig coverage: 1
Consensus contains:	A: 95	C: 72	G: 92	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 372
Reads contain 372 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 760
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 286
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 760
Contig length: 341
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 52	G: 62	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 341
Reads contain 341 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 761
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 285
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 761
Contig length: 311
Avg. contig coverage: 1
Consensus contains:	A: 72	C: 88	G: 81	T: 70	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 311
Reads contain 311 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 762
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 284
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 762
Contig length: 391
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 55	G: 97	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 391
Reads contain 391 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 763
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 283
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 763
Contig length: 409
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 80	G: 106	T: 105	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 409
Reads contain 409 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 764
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 282
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 764
Contig length: 427
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 98	G: 111	T: 121	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 427
Reads contain 427 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 765
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 281
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 765
Contig length: 201
Avg. contig coverage: 1
Consensus contains:	A: 56	C: 53	G: 57	T: 35	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 201
Reads contain 201 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 766
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 280
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 766
Contig length: 427
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 107	G: 96	T: 92	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 427
Reads contain 426 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 767
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 279
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 767
Contig length: 296
Avg. contig coverage: 1
Consensus contains:	A: 74	C: 75	G: 64	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 296
Reads contain 296 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 768
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 278
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 768
Contig length: 330
Avg. contig coverage: 1
Consensus contains:	A: 83	C: 77	G: 97	T: 73	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 330
Reads contain 330 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 769
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 277
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 769
Contig length: 379
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 61	G: 77	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 379
Reads contain 379 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 770
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 276
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 770
Contig length: 195
Avg. contig coverage: 1
Consensus contains:	A: 51	C: 32	G: 72	T: 40	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 195
Reads contain 195 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 771
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 275
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 771
Contig length: 445
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 90	G: 135	T: 109	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 445
Reads contain 444 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 772
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 274
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 772
Contig length: 249
Avg. contig coverage: 1
Consensus contains:	A: 70	C: 67	G: 52	T: 59	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 249
Reads contain 248 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 773
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 273
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 773
Contig length: 380
Avg. contig coverage: 1
Consensus contains:	A: 133	C: 74	G: 82	T: 91	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 380
Reads contain 380 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 774
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 272
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 774
Contig length: 333
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 37	G: 99	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 333
Reads contain 333 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 775
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 271
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 775
Contig length: 369
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 97	G: 70	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 369
Reads contain 369 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 776
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 270
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 776
Contig length: 212
Avg. contig coverage: 1
Consensus contains:	A: 54	C: 49	G: 55	T: 54	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 212
Reads contain 212 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 777
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 269
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 777
Contig length: 385
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 80	G: 77	T: 110	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 385
Reads contain 383 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 778
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 268
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 778
Contig length: 347
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 62	G: 75	T: 131	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 347
Reads contain 347 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 779
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 267
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 779
Contig length: 356
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 81	G: 53	T: 90	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 356
Reads contain 355 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 780
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 266
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 780
Contig length: 530
Avg. contig coverage: 1
Consensus contains:	A: 164	C: 108	G: 146	T: 111	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 530
Reads contain 529 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 781
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 265
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 781
Contig length: 339
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 75	G: 65	T: 61	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 339
Reads contain 339 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 782
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 264
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 782
Contig length: 181
Avg. contig coverage: 1
Consensus contains:	A: 42	C: 28	G: 49	T: 62	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 181
Reads contain 181 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 783
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 263
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 783
Contig length: 413
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 71	G: 102	T: 121	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 413
Reads contain 412 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 784
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 262
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 784
Contig length: 334
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 66	G: 80	T: 93	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 334
Reads contain 333 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 785
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 261
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 785
Contig length: 392
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 52	G: 88	T: 146	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 392
Reads contain 392 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 786
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 260
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 786
Contig length: 359
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 92	G: 60	T: 94	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 359
Reads contain 358 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 787
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 259
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 787
Contig length: 367
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 94	G: 40	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 367
Reads contain 367 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 788
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 258
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 788
Contig length: 339
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 58	G: 80	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 339
Reads contain 339 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 789
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 257
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 789
Contig length: 326
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 64	G: 89	T: 69	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 326
Reads contain 326 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 790
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 256
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 790
Contig length: 323
Avg. contig coverage: 1
Consensus contains:	A: 96	C: 91	G: 59	T: 76	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 323
Reads contain 322 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 791
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 255
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 791
Contig length: 353
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 61	G: 80	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 353
Reads contain 353 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 792
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 254
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 792
Contig length: 339
Avg. contig coverage: 1
Consensus contains:	A: 96	C: 77	G: 83	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 339
Reads contain 339 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 793
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 253
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 793
Contig length: 277
Avg. contig coverage: 1
Consensus contains:	A: 65	C: 64	G: 68	T: 80	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 277
Reads contain 277 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 794
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 252
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 794
Contig length: 316
Avg. contig coverage: 1
Consensus contains:	A: 46	C: 69	G: 109	T: 92	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 316
Reads contain 316 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 795
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 251
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 795
Contig length: 317
Avg. contig coverage: 1
Consensus contains:	A: 69	C: 81	G: 81	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 317
Reads contain 317 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 796
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 250
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 796
Contig length: 490
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 87	G: 120	T: 144	N: 4
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 490
Reads contain 486 bases, 4 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 797
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 249
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 797
Contig length: 310
Avg. contig coverage: 1
Consensus contains:	A: 92	C: 57	G: 69	T: 92	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 310
Reads contain 310 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 798
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 248
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 798
Contig length: 420
Avg. contig coverage: 1
Consensus contains:	A: 108	C: 105	G: 98	T: 109	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 420
Reads contain 420 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 799
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 247
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 799
Contig length: 346
Avg. contig coverage: 1
Consensus contains:	A: 100	C: 97	G: 75	T: 74	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 346
Reads contain 346 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 800
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 246
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 800
Contig length: 425
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 71	G: 130	T: 117	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 425
Reads contain 424 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 801
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 245
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 801
Contig length: 421
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 74	G: 110	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 421
Reads contain 421 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 802
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 244
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 802
Contig length: 180
Avg. contig coverage: 1
Consensus contains:	A: 42	C: 36	G: 70	T: 32	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 180
Reads contain 180 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 803
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 243
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 803
Contig length: 379
Avg. contig coverage: 1
Consensus contains:	A: 108	C: 78	G: 100	T: 92	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 379
Reads contain 378 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 804
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 242
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 804
Contig length: 339
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 86	G: 78	T: 81	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 339
Reads contain 339 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 805
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 241
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 805
Contig length: 412
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 71	G: 110	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 412
Reads contain 412 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 806
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 240
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 806
Contig length: 458
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 82	G: 85	T: 156	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 458
Reads contain 458 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 807
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 239
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 807
Contig length: 485
Avg. contig coverage: 1
Consensus contains:	A: 147	C: 128	G: 100	T: 109	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 485
Reads contain 484 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 808
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 238
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 808
Contig length: 409
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 73	G: 118	T: 114	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 409
Reads contain 408 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 809
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 237
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 809
Contig length: 334
Avg. contig coverage: 1
Consensus contains:	A: 85	C: 86	G: 83	T: 80	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 334
Reads contain 334 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 810
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 236
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 810
Contig length: 345
Avg. contig coverage: 1
Consensus contains:	A: 53	C: 70	G: 111	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 345
Reads contain 345 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 811
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 235
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 811
Contig length: 299
Avg. contig coverage: 1
Consensus contains:	A: 73	C: 65	G: 68	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 299
Reads contain 299 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 812
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 234
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 812
Contig length: 409
Avg. contig coverage: 1
Consensus contains:	A: 81	C: 93	G: 129	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 409
Reads contain 409 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 813
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 233
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 813
Contig length: 321
Avg. contig coverage: 1
Consensus contains:	A: 70	C: 103	G: 76	T: 72	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 321
Reads contain 321 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 814
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 232
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 814
Contig length: 498
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 89	G: 147	T: 131	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 498
Reads contain 498 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 815
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 231
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 815
Contig length: 157
Avg. contig coverage: 1
Consensus contains:	A: 31	C: 55	G: 39	T: 32	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 157
Reads contain 157 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 816
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 230
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 816
Contig length: 401
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 92	G: 121	T: 72	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 401
Reads contain 401 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 817
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 229
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 817
Contig length: 258
Avg. contig coverage: 1
Consensus contains:	A: 67	C: 53	G: 82	T: 56	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 258
Reads contain 258 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 818
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 228
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 818
Contig length: 117
Avg. contig coverage: 1
Consensus contains:	A: 42	C: 21	G: 12	T: 42	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 117
Reads contain 117 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 819
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 227
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 819
Contig length: 289
Avg. contig coverage: 1
Consensus contains:	A: 75	C: 48	G: 93	T: 73	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 289
Reads contain 289 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 820
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 226
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 820
Contig length: 374
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 74	G: 90	T: 108	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 374
Reads contain 373 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 821
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 225
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 821
Contig length: 309
Avg. contig coverage: 1
Consensus contains:	A: 74	C: 67	G: 82	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 309
Reads contain 309 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 822
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 224
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 822
Contig length: 422
Avg. contig coverage: 1
Consensus contains:	A: 108	C: 105	G: 102	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 422
Reads contain 422 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 823
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 223
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 823
Contig length: 210
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 39	G: 42	T: 50	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 210
Reads contain 210 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 824
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 222
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 824
Contig length: 345
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 82	G: 75	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 345
Reads contain 345 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 825
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 221
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 825
Contig length: 409
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 82	G: 88	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 409
Reads contain 409 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 826
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 220
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 826
Contig length: 179
Avg. contig coverage: 1
Consensus contains:	A: 47	C: 30	G: 40	T: 62	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 179
Reads contain 179 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 827
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 219
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 827
Contig length: 420
Avg. contig coverage: 1
Consensus contains:	A: 121	C: 109	G: 108	T: 82	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 420
Reads contain 420 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 828
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 218
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 828
Contig length: 270
Avg. contig coverage: 1
Consensus contains:	A: 71	C: 75	G: 72	T: 52	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 270
Reads contain 270 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 829
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 217
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 829
Contig length: 225
Avg. contig coverage: 1
Consensus contains:	A: 58	C: 47	G: 65	T: 55	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 225
Reads contain 225 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 830
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 216
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 830
Contig length: 379
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 88	G: 69	T: 81	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 379
Reads contain 379 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 831
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 215
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 831
Contig length: 369
Avg. contig coverage: 1
Consensus contains:	A: 129	C: 79	G: 65	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 369
Reads contain 369 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 832
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 214
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 832
Contig length: 292
Avg. contig coverage: 1
Consensus contains:	A: 75	C: 79	G: 76	T: 62	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 292
Reads contain 292 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 833
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 213
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 833
Contig length: 466
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 138	G: 110	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 466
Reads contain 466 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 834
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 212
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 834
Contig length: 515
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 160	G: 99	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 515
Reads contain 515 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 835
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 211
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 835
Contig length: 264
Avg. contig coverage: 1
Consensus contains:	A: 86	C: 33	G: 51	T: 94	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 264
Reads contain 264 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 836
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 210
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 836
Contig length: 320
Avg. contig coverage: 1
Consensus contains:	A: 69	C: 95	G: 68	T: 88	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 320
Reads contain 320 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 837
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 209
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 837
Contig length: 323
Avg. contig coverage: 1
Consensus contains:	A: 85	C: 58	G: 93	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 323
Reads contain 323 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 838
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 208
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 838
Contig length: 455
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 122	G: 88	T: 127	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 455
Reads contain 455 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 839
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 207
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 839
Contig length: 396
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 88	G: 95	T: 111	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 396
Reads contain 395 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 840
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 206
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 840
Contig length: 342
Avg. contig coverage: 1
Consensus contains:	A: 84	C: 83	G: 66	T: 109	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 342
Reads contain 342 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 841
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 205
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 841
Contig length: 379
Avg. contig coverage: 1
Consensus contains:	A: 160	C: 66	G: 64	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 379
Reads contain 379 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 842
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 204
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 842
Contig length: 479
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 112	G: 111	T: 140	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 479
Reads contain 479 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 843
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 203
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 843
Contig length: 299
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 75	G: 66	T: 82	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 299
Reads contain 299 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 844
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 202
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 844
Contig length: 326
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 70	G: 93	T: 69	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 326
Reads contain 326 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 845
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 201
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 845
Contig length: 488
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 122	G: 98	T: 125	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 488
Reads contain 488 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 846
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 200
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 846
Contig length: 211
Avg. contig coverage: 1
Consensus contains:	A: 43	C: 54	G: 69	T: 45	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 211
Reads contain 211 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 847
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 199
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 847
Contig length: 238
Avg. contig coverage: 1
Consensus contains:	A: 54	C: 53	G: 58	T: 73	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 238
Reads contain 238 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 848
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 198
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 848
Contig length: 376
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 93	G: 84	T: 95	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 376
Reads contain 376 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 849
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 197
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 849
Contig length: 196
Avg. contig coverage: 1
Consensus contains:	A: 53	C: 47	G: 49	T: 47	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 196
Reads contain 196 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 850
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 196
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 850
Contig length: 303
Avg. contig coverage: 1
Consensus contains:	A: 75	C: 71	G: 69	T: 82	N: 6
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 303
Reads contain 297 bases, 6 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 851
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 195
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 851
Contig length: 338
Avg. contig coverage: 1
Consensus contains:	A: 85	C: 95	G: 68	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 338
Reads contain 338 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 852
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 194
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 852
Contig length: 374
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 90	G: 98	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 374
Reads contain 374 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 853
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 193
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 853
Contig length: 370
Avg. contig coverage: 1
Consensus contains:	A: 61	C: 153	G: 63	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 370
Reads contain 370 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 854
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 192
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 854
Contig length: 346
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 81	G: 68	T: 98	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 346
Reads contain 346 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 855
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 191
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 855
Contig length: 408
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 99	G: 78	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 408
Reads contain 408 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 856
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 190
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 856
Contig length: 524
Avg. contig coverage: 1
Consensus contains:	A: 134	C: 126	G: 107	T: 155	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 524
Reads contain 522 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 857
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 189
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 857
Contig length: 331
Avg. contig coverage: 1
Consensus contains:	A: 87	C: 64	G: 88	T: 92	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 331
Reads contain 331 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 858
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 188
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 858
Contig length: 400
Avg. contig coverage: 1
Consensus contains:	A: 89	C: 105	G: 109	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 400
Reads contain 400 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 859
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 187
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 859
Contig length: 366
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 74	G: 77	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 366
Reads contain 366 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 860
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 186
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 860
Contig length: 365
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 85	G: 69	T: 114	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 365
Reads contain 365 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 861
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 185
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 861
Contig length: 404
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 60	G: 104	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 404
Reads contain 404 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 862
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 184
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 862
Contig length: 147
Avg. contig coverage: 1
Consensus contains:	A: 31	C: 30	G: 49	T: 37	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 147
Reads contain 147 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 863
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 183
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 863
Contig length: 387
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 56	G: 88	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 387
Reads contain 387 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 864
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 182
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 864
Contig length: 335
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 50	G: 74	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 335
Reads contain 335 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 865
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 181
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 865
Contig length: 334
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 81	G: 67	T: 92	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 334
Reads contain 334 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 866
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 180
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 866
Contig length: 372
Avg. contig coverage: 1
Consensus contains:	A: 87	C: 93	G: 102	T: 89	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 372
Reads contain 371 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 867
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 179
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 867
Contig length: 370
Avg. contig coverage: 1
Consensus contains:	A: 92	C: 54	G: 124	T: 100	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 370
Reads contain 370 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 868
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 178
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 868
Contig length: 334
Avg. contig coverage: 1
Consensus contains:	A: 88	C: 87	G: 81	T: 75	N: 3
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 334
Reads contain 331 bases, 3 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 869
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 177
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 869
Contig length: 324
Avg. contig coverage: 1
Consensus contains:	A: 83	C: 88	G: 55	T: 98	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 324
Reads contain 324 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 870
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 176
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 870
Contig length: 481
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 87	G: 95	T: 143	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 481
Reads contain 481 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 871
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 175
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 871
Contig length: 330
Avg. contig coverage: 1
Consensus contains:	A: 80	C: 87	G: 84	T: 79	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 330
Reads contain 330 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 872
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 174
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 872
Contig length: 355
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 95	G: 77	T: 85	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 355
Reads contain 354 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 873
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 173
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 873
Contig length: 190
Avg. contig coverage: 1
Consensus contains:	A: 74	C: 29	G: 27	T: 60	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 190
Reads contain 190 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 874
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 172
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 874
Contig length: 410
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 109	G: 84	T: 110	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 410
Reads contain 409 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 875
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 171
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 875
Contig length: 390
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 90	G: 100	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 390
Reads contain 390 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 876
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 170
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 876
Contig length: 463
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 106	G: 113	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 463
Reads contain 463 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 877
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 169
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 877
Contig length: 418
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 98	G: 81	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 418
Reads contain 418 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 878
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 168
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 878
Contig length: 177
Avg. contig coverage: 1
Consensus contains:	A: 53	C: 29	G: 51	T: 44	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 177
Reads contain 177 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 879
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 167
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 879
Contig length: 407
Avg. contig coverage: 1
Consensus contains:	A: 162	C: 82	G: 56	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 407
Reads contain 407 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 880
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 166
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 880
Contig length: 272
Avg. contig coverage: 1
Consensus contains:	A: 81	C: 65	G: 57	T: 69	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 272
Reads contain 272 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 881
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 165
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 881
Contig length: 527
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 148	G: 117	T: 142	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 527
Reads contain 526 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 882
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 164
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 882
Contig length: 532
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 140	G: 123	T: 159	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 532
Reads contain 532 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 883
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 163
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 883
Contig length: 416
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 84	G: 108	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 416
Reads contain 416 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 884
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 162
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 884
Contig length: 122
Avg. contig coverage: 1
Consensus contains:	A: 19	C: 15	G: 58	T: 30	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 122
Reads contain 122 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 885
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 161
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 885
Contig length: 293
Avg. contig coverage: 1
Consensus contains:	A: 74	C: 51	G: 71	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 293
Reads contain 293 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 886
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 160
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 886
Contig length: 474
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 122	G: 94	T: 121	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 474
Reads contain 474 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 887
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 159
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 887
Contig length: 404
Avg. contig coverage: 1
Consensus contains:	A: 74	C: 98	G: 90	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 404
Reads contain 404 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 888
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 158
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 888
Contig length: 394
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 94	G: 98	T: 105	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 394
Reads contain 394 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 889
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 157
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 889
Contig length: 419
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 106	G: 72	T: 125	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 419
Reads contain 419 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 890
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 156
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 890
Contig length: 453
Avg. contig coverage: 1
Consensus contains:	A: 134	C: 90	G: 107	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 453
Reads contain 453 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 891
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 155
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 891
Contig length: 440
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 109	G: 123	T: 103	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 440
Reads contain 440 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 892
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 154
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 892
Contig length: 491
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 103	G: 130	T: 147	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 491
Reads contain 491 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 893
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 153
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 893
Contig length: 500
Avg. contig coverage: 1
Consensus contains:	A: 148	C: 131	G: 87	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 500
Reads contain 500 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 894
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 152
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 894
Contig length: 418
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 118	G: 88	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 418
Reads contain 418 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 895
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 151
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 895
Contig length: 261
Avg. contig coverage: 1
Consensus contains:	A: 63	C: 65	G: 74	T: 59	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 261
Reads contain 261 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 896
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 150
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 896
Contig length: 335
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 92	G: 57	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 335
Reads contain 335 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 897
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 149
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 897
Contig length: 315
Avg. contig coverage: 1
Consensus contains:	A: 73	C: 81	G: 72	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 315
Reads contain 315 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 898
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 148
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 898
Contig length: 417
Avg. contig coverage: 1
Consensus contains:	A: 123	C: 92	G: 106	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 417
Reads contain 417 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 899
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 147
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 899
Contig length: 336
Avg. contig coverage: 1
Consensus contains:	A: 83	C: 121	G: 41	T: 91	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 336
Reads contain 336 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 900
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 146
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 900
Contig length: 293
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 46	G: 53	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 293
Reads contain 293 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 901
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 145
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 901
Contig length: 176
Avg. contig coverage: 1
Consensus contains:	A: 55	C: 25	G: 33	T: 63	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 176
Reads contain 176 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 902
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 144
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 902
Contig length: 402
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 73	G: 85	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 402
Reads contain 402 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 903
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 143
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 903
Contig length: 142
Avg. contig coverage: 1
Consensus contains:	A: 28	C: 43	G: 30	T: 41	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 142
Reads contain 142 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 904
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 142
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 904
Contig length: 376
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 86	G: 84	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 376
Reads contain 376 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 905
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 141
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 905
Contig length: 389
Avg. contig coverage: 1
Consensus contains:	A: 91	C: 163	G: 57	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 389
Reads contain 389 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 906
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 140
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 906
Contig length: 350
Avg. contig coverage: 1
Consensus contains:	A: 96	C: 75	G: 82	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 350
Reads contain 350 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 907
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 139
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 907
Contig length: 381
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 86	G: 81	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 381
Reads contain 381 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 908
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 138
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 908
Contig length: 468
Avg. contig coverage: 1
Consensus contains:	A: 145	C: 123	G: 75	T: 125	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 468
Reads contain 468 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 909
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 137
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 909
Contig length: 359
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 82	G: 66	T: 95	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 359
Reads contain 359 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 910
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 136
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 910
Contig length: 232
Avg. contig coverage: 1
Consensus contains:	A: 70	C: 45	G: 59	T: 58	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 232
Reads contain 232 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 911
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 135
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 911
Contig length: 526
Avg. contig coverage: 1
Consensus contains:	A: 149	C: 98	G: 141	T: 138	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 526
Reads contain 526 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 912
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 134
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 912
Contig length: 176
Avg. contig coverage: 1
Consensus contains:	A: 64	C: 27	G: 37	T: 48	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 176
Reads contain 176 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 913
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 133
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 913
Contig length: 471
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 141	G: 76	T: 129	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 471
Reads contain 471 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 914
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 132
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 914
Contig length: 329
Avg. contig coverage: 1
Consensus contains:	A: 67	C: 100	G: 87	T: 75	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 329
Reads contain 329 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 915
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 131
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 915
Contig length: 355
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 49	G: 117	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 355
Reads contain 355 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 916
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 130
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 916
Contig length: 374
Avg. contig coverage: 1
Consensus contains:	A: 88	C: 88	G: 121	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 374
Reads contain 374 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 917
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 129
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 917
Contig length: 262
Avg. contig coverage: 1
Consensus contains:	A: 70	C: 36	G: 60	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 262
Reads contain 262 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 918
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 128
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 918
Contig length: 426
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 106	G: 82	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 426
Reads contain 426 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 919
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 127
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 919
Contig length: 416
Avg. contig coverage: 1
Consensus contains:	A: 88	C: 143	G: 69	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 416
Reads contain 416 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 920
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 126
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 920
Contig length: 356
Avg. contig coverage: 1
Consensus contains:	A: 88	C: 83	G: 99	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 356
Reads contain 356 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 921
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 125
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 921
Contig length: 393
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 109	G: 80	T: 85	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 393
Reads contain 393 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 922
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 124
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 922
Contig length: 440
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 97	G: 105	T: 109	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 440
Reads contain 439 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 923
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 123
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 923
Contig length: 370
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 65	G: 58	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 370
Reads contain 370 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 924
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 122
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 924
Contig length: 428
Avg. contig coverage: 1
Consensus contains:	A: 165	C: 75	G: 68	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 428
Reads contain 428 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 925
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 121
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 925
Contig length: 357
Avg. contig coverage: 1
Consensus contains:	A: 71	C: 86	G: 91	T: 108	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 357
Reads contain 356 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 926
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 120
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 926
Contig length: 475
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 121	G: 100	T: 140	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 475
Reads contain 475 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 927
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 119
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 927
Contig length: 443
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 117	G: 122	T: 110	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 443
Reads contain 443 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 928
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 118
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 928
Contig length: 417
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 82	G: 111	T: 114	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 417
Reads contain 417 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 929
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 117
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 929
Contig length: 138
Avg. contig coverage: 1
Consensus contains:	A: 40	C: 27	G: 31	T: 40	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 138
Reads contain 138 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 930
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 116
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 930
Contig length: 392
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 117	G: 87	T: 82	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 392
Reads contain 392 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 931
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 115
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 931
Contig length: 398
Avg. contig coverage: 1
Consensus contains:	A: 100	C: 77	G: 74	T: 147	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 398
Reads contain 398 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 932
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 114
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 932
Contig length: 349
Avg. contig coverage: 1
Consensus contains:	A: 67	C: 63	G: 111	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 349
Reads contain 349 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 933
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 113
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 933
Contig length: 547
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 151	G: 112	T: 165	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 547
Reads contain 547 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 934
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 112
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 934
Contig length: 242
Avg. contig coverage: 1
Consensus contains:	A: 56	C: 36	G: 81	T: 69	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 242
Reads contain 242 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 935
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 111
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 935
Contig length: 116
Avg. contig coverage: 1
Consensus contains:	A: 37	C: 27	G: 31	T: 21	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 116
Reads contain 116 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 936
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 110
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 936
Contig length: 384
Avg. contig coverage: 1
Consensus contains:	A: 48	C: 144	G: 79	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 384
Reads contain 384 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 937
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 109
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 937
Contig length: 444
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 101	G: 123	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 444
Reads contain 444 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 938
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 108
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 938
Contig length: 149
Avg. contig coverage: 1
Consensus contains:	A: 46	C: 22	G: 40	T: 41	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 149
Reads contain 149 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 939
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 107
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 939
Contig length: 319
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 65	G: 86	T: 69	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 319
Reads contain 319 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 940
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 106
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 940
Contig length: 319
Avg. contig coverage: 1
Consensus contains:	A: 69	C: 79	G: 86	T: 85	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 319
Reads contain 319 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 941
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 105
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 941
Contig length: 122
Avg. contig coverage: 1
Consensus contains:	A: 60	C: 29	G: 9	T: 24	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 122
Reads contain 122 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 942
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 104
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 942
Contig length: 224
Avg. contig coverage: 1
Consensus contains:	A: 51	C: 62	G: 48	T: 63	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 224
Reads contain 224 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 943
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 103
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 943
Contig length: 219
Avg. contig coverage: 1
Consensus contains:	A: 58	C: 56	G: 64	T: 41	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 219
Reads contain 219 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 944
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 102
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 944
Contig length: 252
Avg. contig coverage: 1
Consensus contains:	A: 72	C: 68	G: 54	T: 58	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 252
Reads contain 252 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 945
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 101
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 945
Contig length: 211
Avg. contig coverage: 1
Consensus contains:	A: 46	C: 56	G: 57	T: 52	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 211
Reads contain 211 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 946
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 100
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 946
Contig length: 103
Avg. contig coverage: 1
Consensus contains:	A: 32	C: 22	G: 31	T: 18	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 103
Reads contain 103 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 947
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 99
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 947
Contig length: 113
Avg. contig coverage: 1
Consensus contains:	A: 27	C: 26	G: 31	T: 29	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 113
Reads contain 113 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 948
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 98
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 948
Contig length: 451
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 91	G: 115	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 451
Reads contain 451 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 949
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 97
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 949
Contig length: 459
Avg. contig coverage: 1
Consensus contains:	A: 162	C: 48	G: 149	T: 100	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 459
Reads contain 459 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 950
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 96
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 950
Contig length: 271
Avg. contig coverage: 1
Consensus contains:	A: 68	C: 60	G: 51	T: 92	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 271
Reads contain 271 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 951
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 95
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 951
Contig length: 288
Avg. contig coverage: 1
Consensus contains:	A: 56	C: 65	G: 80	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 288
Reads contain 288 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 952
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 94
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 952
Contig length: 208
Avg. contig coverage: 1
Consensus contains:	A: 47	C: 61	G: 63	T: 37	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 208
Reads contain 208 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 953
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 93
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 953
Contig length: 478
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 128	G: 120	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 478
Reads contain 478 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 954
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 92
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 954
Contig length: 243
Avg. contig coverage: 1
Consensus contains:	A: 67	C: 59	G: 52	T: 65	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 243
Reads contain 243 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 955
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 91
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 955
Contig length: 529
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 138	G: 107	T: 172	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 529
Reads contain 529 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 956
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 90
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 956
Contig length: 271
Avg. contig coverage: 1
Consensus contains:	A: 73	C: 49	G: 80	T: 69	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 271
Reads contain 271 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 957
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 89
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 957
Contig length: 174
Avg. contig coverage: 1
Consensus contains:	A: 43	C: 38	G: 56	T: 37	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 174
Reads contain 174 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 958
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 88
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 958
Contig length: 87
Avg. contig coverage: 1
Consensus contains:	A: 19	C: 24	G: 18	T: 26	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 87
Reads contain 87 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 959
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 87
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 959
Contig length: 323
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 77	G: 49	T: 72	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 323
Reads contain 323 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 960
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 86
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 960
Contig length: 351
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 68	G: 94	T: 88	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 351
Reads contain 351 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 961
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 85
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 961
Contig length: 417
Avg. contig coverage: 1
Consensus contains:	A: 144	C: 93	G: 80	T: 100	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 417
Reads contain 417 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 962
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 84
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 962
Contig length: 128
Avg. contig coverage: 1
Consensus contains:	A: 40	C: 25	G: 39	T: 24	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 128
Reads contain 128 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 963
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 83
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 963
Contig length: 223
Avg. contig coverage: 1
Consensus contains:	A: 72	C: 46	G: 61	T: 44	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 223
Reads contain 223 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 964
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 82
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 964
Contig length: 357
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 64	G: 98	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 357
Reads contain 357 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 965
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 81
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 965
Contig length: 240
Avg. contig coverage: 1
Consensus contains:	A: 52	C: 54	G: 61	T: 73	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 240
Reads contain 240 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 966
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 80
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 966
Contig length: 435
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 109	G: 82	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 435
Reads contain 435 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 967
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 79
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 967
Contig length: 296
Avg. contig coverage: 1
Consensus contains:	A: 68	C: 46	G: 68	T: 114	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 296
Reads contain 296 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 968
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 78
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 968
Contig length: 263
Avg. contig coverage: 1
Consensus contains:	A: 72	C: 50	G: 60	T: 81	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 263
Reads contain 263 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 969
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 77
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 969
Contig length: 338
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 72	G: 88	T: 101	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 338
Reads contain 337 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 970
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 76
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 970
Contig length: 216
Avg. contig coverage: 1
Consensus contains:	A: 50	C: 32	G: 44	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 216
Reads contain 216 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 971
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 75
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 971
Contig length: 135
Avg. contig coverage: 1
Consensus contains:	A: 34	C: 33	G: 38	T: 30	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 135
Reads contain 135 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 972
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 74
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 972
Contig length: 155
Avg. contig coverage: 1
Consensus contains:	A: 33	C: 39	G: 28	T: 55	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 155
Reads contain 155 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 973
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 73
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 973
Contig length: 220
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 50	G: 25	T: 55	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 220
Reads contain 220 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 974
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 72
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 974
Contig length: 345
Avg. contig coverage: 1
Consensus contains:	A: 129	C: 75	G: 47	T: 94	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 345
Reads contain 345 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 975
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 71
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 975
Contig length: 235
Avg. contig coverage: 1
Consensus contains:	A: 63	C: 47	G: 58	T: 67	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 235
Reads contain 235 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 976
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 70
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 976
Contig length: 318
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 61	G: 71	T: 69	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 318
Reads contain 318 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 977
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 69
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 977
Contig length: 466
Avg. contig coverage: 1
Consensus contains:	A: 151	C: 119	G: 81	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 466
Reads contain 466 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 978
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 68
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 978
Contig length: 248
Avg. contig coverage: 1
Consensus contains:	A: 77	C: 51	G: 70	T: 50	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 248
Reads contain 248 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 979
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 67
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 979
Contig length: 440
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 110	G: 96	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 440
Reads contain 440 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 980
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 66
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 980
Contig length: 306
Avg. contig coverage: 1
Consensus contains:	A: 66	C: 45	G: 102	T: 92	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 306
Reads contain 305 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 981
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 65
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 981
Contig length: 540
Avg. contig coverage: 1
Consensus contains:	A: 149	C: 129	G: 123	T: 139	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 540
Reads contain 540 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 982
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 64
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 982
Contig length: 185
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 27	G: 32	T: 50	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 185
Reads contain 185 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 983
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 63
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 983
Contig length: 329
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 67	G: 72	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 329
Reads contain 329 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 984
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 62
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 984
Contig length: 173
Avg. contig coverage: 1
Consensus contains:	A: 65	C: 35	G: 44	T: 29	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 173
Reads contain 173 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 985
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 61
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 985
Contig length: 463
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 78	G: 134	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 463
Reads contain 463 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 986
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 60
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 986
Contig length: 372
Avg. contig coverage: 1
Consensus contains:	A: 129	C: 79	G: 56	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 372
Reads contain 372 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 987
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 59
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 987
Contig length: 431
Avg. contig coverage: 1
Consensus contains:	A: 85	C: 102	G: 111	T: 133	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 431
Reads contain 431 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 988
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 58
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 988
Contig length: 423
Avg. contig coverage: 1
Consensus contains:	A: 136	C: 77	G: 76	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 423
Reads contain 423 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 989
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 57
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 989
Contig length: 543
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 136	G: 104	T: 172	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 543
Reads contain 542 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 990
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 56
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 990
Contig length: 418
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 141	G: 94	T: 73	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 418
Reads contain 418 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 991
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 55
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 991
Contig length: 441
Avg. contig coverage: 1
Consensus contains:	A: 95	C: 111	G: 113	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 441
Reads contain 441 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 992
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 54
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 992
Contig length: 456
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 81	G: 107	T: 161	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 456
Reads contain 456 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 993
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 53
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 993
Contig length: 355
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 69	G: 96	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 355
Reads contain 355 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 994
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 52
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 994
Contig length: 404
Avg. contig coverage: 1
Consensus contains:	A: 92	C: 60	G: 135	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 404
Reads contain 404 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 995
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 51
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 995
Contig length: 339
Avg. contig coverage: 1
Consensus contains:	A: 87	C: 80	G: 78	T: 94	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 339
Reads contain 339 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 996
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 50
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 996
Contig length: 563
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 91	G: 175	T: 158	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 563
Reads contain 563 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 997
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 49
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 997
Contig length: 330
Avg. contig coverage: 1
Consensus contains:	A: 84	C: 94	G: 70	T: 82	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 330
Reads contain 330 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 998
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 48
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 998
Contig length: 205
Avg. contig coverage: 1
Consensus contains:	A: 71	C: 50	G: 49	T: 35	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 205
Reads contain 205 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 999
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 47
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 999
Contig length: 374
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 107	G: 45	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 374
Reads contain 374 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1000
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 46
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1000
Contig length: 360
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 63	G: 93	T: 84	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 360
Reads contain 360 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1001
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 45
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1001
Contig length: 312
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 71	G: 54	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 312
Reads contain 312 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1002
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 44
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1002
Contig length: 316
Avg. contig coverage: 1
Consensus contains:	A: 87	C: 85	G: 62	T: 82	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 316
Reads contain 316 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1003
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 43
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1003
Contig length: 332
Avg. contig coverage: 1
Consensus contains:	A: 87	C: 78	G: 78	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 332
Reads contain 332 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1004
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 42
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1004
Contig length: 327
Avg. contig coverage: 1
Consensus contains:	A: 78	C: 92	G: 78	T: 79	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 327
Reads contain 327 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1005
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 41
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1005
Contig length: 367
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 65	G: 114	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 367
Reads contain 367 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1006
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 40
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1006
Contig length: 299
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 69	G: 81	T: 73	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 299
Reads contain 299 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1007
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 39
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1007
Contig length: 440
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 109	G: 96	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 440
Reads contain 440 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1008
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 38
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1008
Contig length: 375
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 111	G: 76	T: 98	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 375
Reads contain 375 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1009
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 37
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1009
Contig length: 354
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 60	G: 70	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 354
Reads contain 354 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1010
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 36
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1010
Contig length: 255
Avg. contig coverage: 1
Consensus contains:	A: 59	C: 41	G: 49	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 255
Reads contain 255 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1011
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 35
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1011
Contig length: 456
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 121	G: 82	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 456
Reads contain 456 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1012
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 34
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1012
Contig length: 386
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 74	G: 92	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 386
Reads contain 386 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1013
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 33
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1013
Contig length: 473
Avg. contig coverage: 1
Consensus contains:	A: 157	C: 124	G: 76	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 473
Reads contain 473 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1014
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 32
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1014
Contig length: 394
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 54	G: 88	T: 114	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 394
Reads contain 394 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1015
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 31
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1015
Contig length: 468
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 141	G: 88	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 468
Reads contain 468 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1016
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 30
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1016
Contig length: 518
Avg. contig coverage: 1
Consensus contains:	A: 158	C: 101	G: 112	T: 147	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 518
Reads contain 518 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1017
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 29
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1017
Contig length: 423
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 75	G: 107	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 423
Reads contain 423 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1018
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 28
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1018
Contig length: 453
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 93	G: 126	T: 95	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 453
Reads contain 453 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1019
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 27
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1019
Contig length: 602
Avg. contig coverage: 1
Consensus contains:	A: 162	C: 153	G: 164	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 602
Reads contain 602 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1020
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 26
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1020
Contig length: 360
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 72	G: 99	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 360
Reads contain 360 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1021
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 25
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1021
Contig length: 319
Avg. contig coverage: 1
Consensus contains:	A: 100	C: 62	G: 73	T: 84	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 319
Reads contain 319 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1022
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 24
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1022
Contig length: 551
Avg. contig coverage: 1
Consensus contains:	A: 133	C: 107	G: 175	T: 136	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 551
Reads contain 551 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1023
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 23
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1023
Contig length: 491
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 137	G: 117	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 491
Reads contain 491 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1024
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 22
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1024
Contig length: 405
Avg. contig coverage: 1
Consensus contains:	A: 123	C: 58	G: 84	T: 139	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 405
Reads contain 404 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1025
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 21
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1025
Contig length: 321
Avg. contig coverage: 1
Consensus contains:	A: 66	C: 77	G: 84	T: 94	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 321
Reads contain 321 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1026
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 20
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1026
Contig length: 454
Avg. contig coverage: 1
Consensus contains:	A: 126	C: 129	G: 81	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 454
Reads contain 454 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1027
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 19
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1027
Contig length: 316
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 88	G: 43	T: 82	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 316
Reads contain 316 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1028
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 18
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1028
Contig length: 356
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 71	G: 73	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 356
Reads contain 356 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1029
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 17
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1029
Contig length: 521
Avg. contig coverage: 1
Consensus contains:	A: 183	C: 98	G: 144	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 521
Reads contain 521 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1030
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 16
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1030
Contig length: 262
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 41	G: 54	T: 85	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 262
Reads contain 262 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1031
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 15
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1031
Contig length: 195
Avg. contig coverage: 1
Consensus contains:	A: 46	C: 43	G: 59	T: 47	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 195
Reads contain 195 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1032
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 14
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1032
Contig length: 429
Avg. contig coverage: 1
Consensus contains:	A: 165	C: 113	G: 54	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 429
Reads contain 429 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1033
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 13
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1033
Contig length: 376
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 106	G: 69	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 376
Reads contain 376 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1034
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 12
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1034
Contig length: 534
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 137	G: 156	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 534
Reads contain 534 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1035
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 11
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1035
Contig length: 574
Avg. contig coverage: 1
Consensus contains:	A: 192	C: 135	G: 118	T: 129	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 574
Reads contain 574 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1036
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 10
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1036
Contig length: 517
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 119	G: 122	T: 130	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 517
Reads contain 517 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1037
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 9
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1037
Contig length: 322
Avg. contig coverage: 1
Consensus contains:	A: 93	C: 71	G: 69	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 322
Reads contain 322 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1038
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 8
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1038
Contig length: 372
Avg. contig coverage: 1
Consensus contains:	A: 89	C: 88	G: 97	T: 98	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 372
Reads contain 372 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1039
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 7
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1039
Contig length: 557
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 136	G: 119	T: 159	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 557
Reads contain 557 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1040
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 6
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1040
Contig length: 413
Avg. contig coverage: 1
Consensus contains:	A: 93	C: 111	G: 90	T: 119	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 413
Reads contain 413 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1041
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 5
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1041
Contig length: 580
Avg. contig coverage: 1
Consensus contains:	A: 151	C: 125	G: 162	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 580
Reads contain 580 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1042
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 4
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1042
Contig length: 405
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 88	G: 93	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 405
Reads contain 405 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1043
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 3
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1043
Contig length: 477
Avg. contig coverage: 1
Consensus contains:	A: 126	C: 144	G: 87	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 477
Reads contain 477 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1044
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 2
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1044
Contig length: 323
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 72	G: 89	T: 72	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 323
Reads contain 323 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1045
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1045
Contig length: 372
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 56	G: 122	T: 85	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 372
Reads contain 372 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Saving project statistics to file: remain_log/remain_info_contigstats_pass.1.txt
Saving read tag list to file: remain_log/remain_info_readtaglist.1.txt
Saving contig tag list to file: remain_log/remain_info_consensustaglist.1.txt
Saving project contig<->read list to file: remain_log/remain_info_contigreadlist_pass.1.txt
Localtime: Thu Jul 15 12:00:00 2010
Saving project statistics to file: remain_info/remain_info_contigstats.txt
Localtime: Thu Jul 15 12:00:00 2010
Saving read tag list to file: remain_info/remain_info_readtaglist.txt
Localtime: Thu Jul 15 12:00:00 2010
Saving contig tag list to file: remain_info/remain_info_consensustaglist.txt
Localtime: Thu Jul 15 12:00:00 2010
Saving project contig<->read list to file: remain_info/remain_info_contigreadlist.txt
Localtime: Thu Jul 15 12:00:00 2010
Saving contigs to file: remain_results/remain_out.caf
Localtime: Thu Jul 15 12:00:00 2010
Saving contigs to directory: remain_results/remain_out.gap4da
(first deleting old directory)
(now creating new directory)
(saving contigs)
Done.
Localtime: Thu Jul 15 12:00:00 2010
Saving contigs to FASTA file: remain_results/remain_out.unpadded.fasta
Saving padded contigs to FASTA file: remain_results/remain_out.padded.fasta
Saving contig qualities to FASTA quality file: remain_results/remain_out.unpadded.fasta.qual
Saving padded contig qualities to FASTA quality file: remain_results/remain_out.padded.fasta.qual
Localtime: Thu Jul 15 12:00:00 2010
Saving SNP analysis to file: remain_info/remain_info_snpanalysis.txt
Finished assembly, extracting contigs.
Closing step2out.
Closing step2strout.
Done with step 2.



Starting step 3:
	clustering contigs
	finding possible allelic variances
	finding possible allelic variances with SNP

Loading parameters from file: me_step3.par

Used parameter settings:
  General (-GE):
	Project name (pro)                      : step3
	Load job (lj)                           : CAF file (caf)
	Filecheck only (fo)                     : No
	External quality (eq)                   : from SCF (scf)
	    Ext. qual. override (eqo)           : No
	    Discard reads on e.q. error (droeqe): No
	Read naming scheme (rns)                : Sanger Institute (sanger)
	Merge with XML trace info (mxti)        : No
	Use template information (uti)          : No

	EST-assembly start step (ess)           : 1

  Assembly options (-AS):
	Minimum read length (mrl)               : 60
	Number of passes (nop)                  : 1
	    Skim each pass (sep)                : Yes
	Maximum number of RMB break loops (rbl) : 1
	Spoiler detection (sd)                  : No
	    Last pass only (sdlpo)              : Yes
	Base default quality (bdq)              : Yes

	Use genomic pathfinder (ugpf)           : Yes

	Use emergency search stop (uess)        : Yes
	    ESS partner depth (esspd)           : 500
	Use emergency blacklist (uebl)          : Yes
	Use max. contig build time (umcbt)      : No
	    Build time in seconds (bts)         : 10000

  Strain and backbone options (-SB):
	Load straindata (lsd)                   : Yes
	Load backbone (lb)                      : No
	    Start backbone usage in pass (sbuip): 1
	    Backbone strain name (bsn)          : (none)
	    Backbone file type (bft)            : FASTA file (fasta)
	    Backbone rail length (brl)          : 2500
	    Backbone base quality (bbq)         : 0
	    Also build new contigs (abnc)       : Yes

  Dataprocessing options (-DP):
	Use read extensions (ure)               : No
	    Read extension window length (rewl) : 30
	    Read extension w. maxerrors (rewme) : 2
	    First extension in pass (feip)      : 0
	    Last extension in pass (leip)       : 0
	Tag poly A/T at ends (tpae)             : Yes
	    Polybase window length (pbwl)       : 7
	    Polybase window maxerrors (pbwme)   : 2
	    Polyb. window grace distance (pbwgc): 9

  Clipping options (-CL):
	Possible vector leftover clip (pvc) : No
	    maximum len allowed (pvcmla)    : 12
	Quality clip (qc)                   : Yes
	    Minimum quality (qcmq)          : 20
	    Window length (qcwl)            : 30
	Masked bases clip (mbc)             : Yes
	    Gap size (mbcgs)                : 15
	    Max front gap (mbcmfg)          : 30
	    Max end gap (mbcmeg)            : 60
	Ensure minimum left clip (emlc)     : No
	    Minimum left clip req. (mlcr)   : 25
	    Set minimum left clip to (smlc) : 30

  Parameters for SKIM algorithm (-SK):
	Bases per hash (bph)             : 16
	Hash save stepping (hss)         : 4
	Percent required (pr)            : 25
	Maximum hashes in memory (mhim)  : 15000000
	Max hits per read (mhpr)         : 200

  Align parameters for Smith-Waterman align (-AL):
	Bandwidth in percent (bip)         : 15
	Bandwidth max (bmax)               : 100
	Bandwidth min (bmin)               : 25
	Minimum score (ms)                 : 30
	Minimum overlap (mo)               : 30
	Minimum relative score in % (mrs)  : 75
	Extra gap penalty (egp)            : Yes
	    extra gap penalty level (egpl) : est_splitsplices
	    Max. egp in percent (megpp)    : 100

  Contig parameters (-CO):
	Name prefix (np)                                         : step3
	Error analysis (an)                                      : SCF signal (signal)
	Reject on drop in relative alignment score (%)           : 12
	Max. error rate in dangerous zones in % (dmer)           : 1
	Mark repeats (mr)                                        : Yes
	    Assume SNP instead of repeats (asir)                 : Yes
	    Minimum reads per group needed for tagging (mrpg)    : 1
	    Minimum neighbour quality needed for tagging (mnq)   : 20
	    Minimum Group Quality needed for RMB Tagging (mgqrt) : 30
	    End-read Marking Exclusion Area in bases (emea)      : 9
	    Also mark gap bases (amgb)                           : Yes
	        Also mark gap bases - even multicolumn (amgbemc) : Yes
	        Also mark gap bases - need both strands (amgbnbs): Yes
	Default template insert size minimum (dismin)            : 500
	Default template insert size maximum (dismax)            : 5000

  Edit options (-ED):
	Automatic contig editing (ace)        : No
	Strict editing mode (sem)             : No
	Confirmation threshold in percent (ct): 50

  Directories (-DI):
	When loading EXP   files: 
	When loading SCF   files: 
	For writing log files   : step3_log
	For writing gap4 DA res.: step3_out

  Input files (-FI):
	When loading EXP fofn                    : step3_in.fofn
	When loading project from PHD            : step3_in.phd.1
	When loading project from CAF            : step2_reads.caf
	When loading sequences from FASTA        : step3_in.fasta
	When loading qualities from FASTA quality: step3_in.fasta.qual
	When loading straindata                  : step2_straindata.txt
	When loading XML trace info files        : step3_traceinfo_in.xml

	When loading backbone from CAF           : step3_backbone_in.caf
	When loading backbone from GenBank       : step3_backbone_in.gbf
	When loading backbone from FASTA         : step3_backbone_in.fasta

  Output files (-OUTPUT/-OUT):
    Result files:
	Saved as CAF                       (orc): Yes
	Saved as FASTA                     (orf): Yes
	Saved as GAP4 (directed assembly)  (org): Yes
	Saved as phrap ACE                 (ora): No
	Saved as HTML                      (orh): No
	Saved as Transposed Contig Summary (ors): No
	Saved as simple text format        (ort): No

    Temporary result files:
	Saved as CAF                      (otc): No
	Saved as FASTA                    (otf): No
	Saved as GAP4 (directed assembly) (otg): No
	Saved as phrap ACE                (ota): No
	Saved as HTML                     (oth): No
	Saved as Transposed Contig Summary(ots): No
	Saved as simple text format       (ott): No

    Extended temporary result files:
	Saved as CAF                      (oetc): No
	Saved as FASTA                    (oetf): No
	Saved as GAP4 (directed assembly) (oetg): No
	Saved as phrap ACE                (oeta): No
	Saved as HTML                     (oeth): No
	Save also singlets               (oetas): No

    Alignment output customisation:
	TEXT characters per line          (tcpl): 60
	HTML characters per line          (hcpl): 60
	TEXT characters per line         (tegfc): ' '
	HTML characters per line         (hegfc): ' '

    File / directory names:
	CAF             : step3_out.caf
	FASTA           : step3_out.unpadded.fasta
	FASTA quality   : step3_out.unpadded.fasta.qual
	FASTA (padded)  : step3_out.padded.fasta
	FASTA qual.(pad): step3_out.padded.fasta.qual
	GAP4 (directory): step3_out.gap4da
	ACE             : step3_out.ace
	HTML            : step3_out.html
	Simple text     : step3_out.txt
	TCS overview    : step3_out.tcs

Creating directory step3_log ... done.
Creating directory step3_results ... done.
Creating directory step3_info ... done.
Localtime: Thu Jul 15 12:00:00 2010

Loading project from CAF file: step2_reads.caf
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
Localtime: Thu Jul 15 12:00:00 2010

Loading straindata.
Building hash table ... done.

Read 1426 straindata lines.


Pool has 1426 reads .
Checking reads for trace data:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
No SCF data present in any read, automatic contig editing is now switched off.
1426 reads with valid data for assembly.

For the reads that are neither backbones nor rails:
- 0 reads have not enough good bases for assembly.
- 1426 reads used for assembly.
- 0 reads have no real quality (see miralog.noqualities).
- mean length of good parts of used reads: 415
Localtime: Thu Jul 15 12:00:00 2010

Generated 1426 unique template ids for 1426 valid reads.
No useful template information found, template routines will not be used.
Localtime: Thu Jul 15 12:00:00 2010

Seeing strain 1: "default"
Seeing strain 2: "remain"
Generated 2 unique strain ids for 1426 reads.
Tagging poly A/T stretches at ends of reads.

Localtime: Thu Jul 15 12:00:00 2010


Searching for possible overlaps:
Localtime: Thu Jul 15 12:00:00 2010
We will get 1 partitions.
Progressend: 2852
Now running partitioned skimmer with 1 partitions:

Working on partition 1/1
Will contain read IDs 0 to 1425
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
Total megahubs: 0

Skim summary:
	accepted: 1333
	possible: 369765
	permbans: 0

Hits chosen: 1245

Localtime: Thu Jul 15 12:00:00 2010



Pass: 1
Making alignments.
Localtime: Thu Jul 15 12:00:00 2010

Aligning possible forward matches:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 
Localtime: Thu Jul 15 12:00:00 2010

Aligning possible complement matches:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 

Loading confirmed overlaps from disk (will need approximately 1 M.):
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 

Sorting confirmed overlaps (this may take a while) ... done.

Generating clusters:
 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] 

Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1426
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1
Contig length: 512
Avg. contig coverage: 1.7
Consensus contains:	A: 126	C: 118	G: 103	T: 164	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 435
Reads contain 871 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 0 Strong RMB
 - 0 Weak RMB
 - 1 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 2
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1424
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 2
Contig length: 568
Avg. contig coverage: 1.71
Consensus contains:	A: 122	C: 151	G: 119	T: 165	N: 0
			IUPAC: 11	Funny: 0	*: 0

Num reads: 2
Avg. read length: 487
Reads contain 975 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 0 Strong RMB
 - 0 Weak RMB
 - 8 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 3
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1422
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 3
Contig length: 911
Avg. contig coverage: 1.52
Consensus contains:	A: 255	C: 243	G: 179	T: 219	N: 0
			IUPAC: 11	Funny: 0	*: 4

Num reads: 2
Avg. read length: 694
Reads contain 1384 bases, 0 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 0 Strong RMB
 - 0 Weak RMB
 - 9 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 4
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1420
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 4
Contig length: 490
Avg. contig coverage: 1.82
Consensus contains:	A: 136	C: 126	G: 114	T: 106	N: 0
			IUPAC: 8	Funny: 0	*: 0

Num reads: 2
Avg. read length: 447
Reads contain 895 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 0 Strong RMB
 - 0 Weak RMB
 - 7 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 5
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1418
+[1] +a
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 5
Contig length: 678
Avg. contig coverage: 1.52
Consensus contains:	A: 153	C: 183	G: 171	T: 161	N: 0
			IUPAC: 8	Funny: 0	*: 2

Num reads: 2
Avg. read length: 516
Reads contain 1028 bases, 0 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 0 Strong RMB
 - 0 Weak RMB
 - 6 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 6
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1416
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 6
Contig length: 607
Avg. contig coverage: 1.8
Consensus contains:	A: 141	C: 156	G: 174	T: 133	N: 0
			IUPAC: 0	Funny: 0	*: 3

Num reads: 2
Avg. read length: 546
Reads contain 1087 bases, 1 Ns and 5 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 0 Strong RMB
 - 0 Weak RMB
 - 2 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 7
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1414
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 7
Contig length: 549
Avg. contig coverage: 1.93
Consensus contains:	A: 131	C: 124	G: 172	T: 117	N: 0
			IUPAC: 3	Funny: 0	*: 2

Num reads: 2
Avg. read length: 530
Reads contain 1053 bases, 0 Ns and 7 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 8
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1412
+[1] ++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 8
Contig length: 511
Avg. contig coverage: 2.95
Consensus contains:	A: 93	C: 146	G: 116	T: 133	N: 0
			IUPAC: 16	Funny: 0	*: 7

Num reads: 3
Avg. read length: 503
Reads contain 1493 bases, 0 Ns and 16 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 0 Strong RMB
 - 0 Weak RMB
 - 19 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 9
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1409
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 9
Contig length: 620
Avg. contig coverage: 1.7
Consensus contains:	A: 134	C: 137	G: 162	T: 167	N: 0
			IUPAC: 17	Funny: 0	*: 3

Num reads: 2
Avg. read length: 528
Reads contain 1050 bases, 0 Ns and 7 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 0 Strong RMB
 - 0 Weak RMB
 - 20 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 10
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1407
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 10
Contig length: 564
Avg. contig coverage: 1.74
Consensus contains:	A: 112	C: 149	G: 120	T: 151	N: 2
			IUPAC: 30	Funny: 0	*: 0

Num reads: 2
Avg. read length: 492
Reads contain 978 bases, 4 Ns and 3 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 0 Strong RMB
 - 0 Weak RMB
 - 27 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 11
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1405
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 11
Contig length: 386
Avg. contig coverage: 1.78
Consensus contains:	A: 99	C: 112	G: 94	T: 77	N: 0
			IUPAC: 3	Funny: 0	*: 1

Num reads: 2
Avg. read length: 344
Reads contain 686 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 0 Strong RMB
 - 0 Weak RMB
 - 2 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 12
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1403
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 12
Contig length: 490
Avg. contig coverage: 1.65
Consensus contains:	A: 138	C: 134	G: 74	T: 126	N: 0
			IUPAC: 18	Funny: 0	*: 0

Num reads: 2
Avg. read length: 406
Reads contain 808 bases, 0 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 0 Strong RMB
 - 0 Weak RMB
 - 19 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 13
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1401
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 13
Contig length: 562
Avg. contig coverage: 1.59
Consensus contains:	A: 144	C: 119	G: 148	T: 144	N: 0
			IUPAC: 4	Funny: 0	*: 3

Num reads: 2
Avg. read length: 447
Reads contain 891 bases, 0 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 0 Strong RMB
 - 0 Weak RMB
 - 6 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 14
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1399
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 14
Contig length: 587
Avg. contig coverage: 1.44
Consensus contains:	A: 149	C: 147	G: 115	T: 165	N: 0
			IUPAC: 8	Funny: 0	*: 3

Num reads: 2
Avg. read length: 425
Reads contain 844 bases, 0 Ns and 7 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 0 Strong RMB
 - 0 Weak RMB
 - 12 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 15
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1397
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 15
Contig length: 253
Avg. contig coverage: 1.71
Consensus contains:	A: 62	C: 52	G: 75	T: 63	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 2
Avg. read length: 217
Reads contain 435 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 0 Strong RMB
 - 0 Weak RMB
 - 1 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 16
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1395
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 16
Contig length: 504
Avg. contig coverage: 1.47
Consensus contains:	A: 119	C: 134	G: 96	T: 133	N: 0
			IUPAC: 21	Funny: 0	*: 1

Num reads: 2
Avg. read length: 371
Reads contain 741 bases, 0 Ns and 2 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 0 Strong RMB
 - 0 Weak RMB
 - 11 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 17
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1393
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 17
Contig length: 377
Avg. contig coverage: 1.23
Consensus contains:	A: 98	C: 103	G: 73	T: 96	N: 0
			IUPAC: 7	Funny: 0	*: 0

Num reads: 2
Avg. read length: 233
Reads contain 465 bases, 0 Ns and 1 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 0 Strong RMB
 - 0 Weak RMB
 - 1 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 18
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1391
+[1] +++a
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 18
Contig length: 738
Avg. contig coverage: 2.69
Consensus contains:	A: 172	C: 182	G: 174	T: 175	N: 0
			IUPAC: 29	Funny: 0	*: 6

Num reads: 4
Avg. read length: 497
Reads contain 1979 bases, 1 Ns and 11 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 0 Strong RMB
 - 0 Weak RMB
 - 23 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 19
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1387
+[1] +++
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 19
Contig length: 703
Avg. contig coverage: 2.28
Consensus contains:	A: 184	C: 158	G: 171	T: 142	N: 1
			IUPAC: 43	Funny: 0	*: 4

Num reads: 4
Avg. read length: 401
Reads contain 1589 bases, 1 Ns and 16 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 0 Strong RMB
 - 0 Weak RMB
 - 40 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 20
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1383
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 20
Contig length: 509
Avg. contig coverage: 1.83
Consensus contains:	A: 121	C: 118	G: 116	T: 148	N: 0
			IUPAC: 3	Funny: 0	*: 3

Num reads: 2
Avg. read length: 467
Reads contain 931 bases, 0 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 0 Strong RMB
 - 0 Weak RMB
 - 2 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 21
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1381
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 21
Contig length: 767
Avg. contig coverage: 1.64
Consensus contains:	A: 169	C: 193	G: 172	T: 195	N: 0
			IUPAC: 38	Funny: 0	*: 0

Num reads: 2
Avg. read length: 630
Reads contain 1259 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 0 Strong RMB
 - 0 Weak RMB
 - 38 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 22
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1379
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 22
Contig length: 421
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 114	G: 100	T: 95	N: 0
			IUPAC: 6	Funny: 0	*: 0

Num reads: 1
Avg. read length: 421
Reads contain 421 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 23
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1378
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 23
Contig length: 565
Avg. contig coverage: 1.76
Consensus contains:	A: 134	C: 108	G: 146	T: 150	N: 0
			IUPAC: 18	Funny: 0	*: 9

Num reads: 2
Avg. read length: 499
Reads contain 987 bases, 0 Ns and 11 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 0 Strong RMB
 - 0 Weak RMB
 - 20 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 24
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1376
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 24
Contig length: 429
Avg. contig coverage: 1
Consensus contains:	A: 100	C: 116	G: 96	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 429
Reads contain 429 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 25
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1375
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 25
Contig length: 628
Avg. contig coverage: 1.25
Consensus contains:	A: 176	C: 133	G: 149	T: 160	N: 3
			IUPAC: 6	Funny: 0	*: 1

Num reads: 2
Avg. read length: 395
Reads contain 783 bases, 3 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 0 Strong RMB
 - 0 Weak RMB
 - 9 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 26
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1373
+[1] +
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 26
Contig length: 838
Avg. contig coverage: 1.18
Consensus contains:	A: 204	C: 193	G: 213	T: 224	N: 0
			IUPAC: 1	Funny: 0	*: 3

Num reads: 2
Avg. read length: 497
Reads contain 990 bases, 0 Ns and 4 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Marking possibly misassembled repeats ...done. Found
 - 0 Strong RMB
 - 0 Weak RMB
 - 1 SNP
positions tagged.Transfering contig RMB permanent pair bans.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 27
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1371
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 27
Contig length: 609
Avg. contig coverage: 1
Consensus contains:	A: 145	C: 129	G: 156	T: 158	N: 0
			IUPAC: 21	Funny: 0	*: 0

Num reads: 1
Avg. read length: 609
Reads contain 609 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 28
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1370
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 28
Contig length: 382
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 75	G: 114	T: 68	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 382
Reads contain 382 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 29
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1369
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 29
Contig length: 562
Avg. contig coverage: 1
Consensus contains:	A: 168	C: 112	G: 146	T: 136	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 562
Reads contain 562 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 30
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1368
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 30
Contig length: 698
Avg. contig coverage: 1
Consensus contains:	A: 160	C: 159	G: 204	T: 173	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 1
Avg. read length: 698
Reads contain 698 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 31
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1367
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 31
Contig length: 638
Avg. contig coverage: 1
Consensus contains:	A: 169	C: 179	G: 122	T: 163	N: 0
			IUPAC: 5	Funny: 0	*: 0

Num reads: 1
Avg. read length: 638
Reads contain 638 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 32
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1366
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 32
Contig length: 589
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 189	G: 110	T: 162	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 589
Reads contain 589 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 33
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1365
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 33
Contig length: 421
Avg. contig coverage: 1
Consensus contains:	A: 113	C: 73	G: 91	T: 129	N: 0
			IUPAC: 15	Funny: 0	*: 0

Num reads: 1
Avg. read length: 421
Reads contain 421 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 34
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1364
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 34
Contig length: 502
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 128	G: 116	T: 119	N: 0
			IUPAC: 7	Funny: 0	*: 0

Num reads: 1
Avg. read length: 502
Reads contain 502 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 35
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1363
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 35
Contig length: 602
Avg. contig coverage: 1
Consensus contains:	A: 155	C: 151	G: 135	T: 161	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 602
Reads contain 602 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 36
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1362
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 36
Contig length: 624
Avg. contig coverage: 1
Consensus contains:	A: 155	C: 122	G: 175	T: 171	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 624
Reads contain 624 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 37
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1361
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 37
Contig length: 462
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 89	G: 113	T: 153	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 462
Reads contain 462 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 38
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1360
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 38
Contig length: 467
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 151	G: 78	T: 114	N: 0
			IUPAC: 6	Funny: 0	*: 0

Num reads: 1
Avg. read length: 467
Reads contain 467 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 39
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1359
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 39
Contig length: 677
Avg. contig coverage: 1
Consensus contains:	A: 174	C: 134	G: 187	T: 181	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 677
Reads contain 677 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 40
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1358
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 40
Contig length: 440
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 105	G: 102	T: 109	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 440
Reads contain 440 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 41
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1357
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 41
Contig length: 694
Avg. contig coverage: 1
Consensus contains:	A: 198	C: 173	G: 138	T: 185	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 694
Reads contain 694 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 42
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1356
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 42
Contig length: 539
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 133	G: 137	T: 125	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 539
Reads contain 539 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 43
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1355
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 43
Contig length: 546
Avg. contig coverage: 1
Consensus contains:	A: 155	C: 134	G: 133	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 546
Reads contain 546 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 44
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1354
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 44
Contig length: 488
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 93	G: 126	T: 136	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 1
Avg. read length: 488
Reads contain 488 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 45
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1353
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 45
Contig length: 518
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 129	G: 78	T: 150	N: 0
			IUPAC: 18	Funny: 0	*: 0

Num reads: 1
Avg. read length: 518
Reads contain 518 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 46
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1352
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 46
Contig length: 538
Avg. contig coverage: 1
Consensus contains:	A: 133	C: 147	G: 100	T: 153	N: 0
			IUPAC: 5	Funny: 0	*: 0

Num reads: 1
Avg. read length: 538
Reads contain 538 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 47
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1351
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 47
Contig length: 538
Avg. contig coverage: 1
Consensus contains:	A: 152	C: 128	G: 91	T: 167	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 538
Reads contain 538 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 48
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1350
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 48
Contig length: 377
Avg. contig coverage: 1
Consensus contains:	A: 86	C: 104	G: 85	T: 100	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 1
Avg. read length: 377
Reads contain 377 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 49
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1349
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 49
Contig length: 456
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 121	G: 92	T: 109	N: 0
			IUPAC: 9	Funny: 0	*: 0

Num reads: 1
Avg. read length: 456
Reads contain 456 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 50
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1348
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 50
Contig length: 589
Avg. contig coverage: 1
Consensus contains:	A: 185	C: 139	G: 113	T: 151	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 589
Reads contain 589 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 51
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1347
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 51
Contig length: 511
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 148	G: 102	T: 122	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 511
Reads contain 511 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 52
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1346
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 52
Contig length: 548
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 114	G: 116	T: 209	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 548
Reads contain 548 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 53
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1345
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 53
Contig length: 526
Avg. contig coverage: 1
Consensus contains:	A: 160	C: 119	G: 125	T: 117	N: 0
			IUPAC: 5	Funny: 0	*: 0

Num reads: 1
Avg. read length: 526
Reads contain 526 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 54
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1344
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 54
Contig length: 521
Avg. contig coverage: 1
Consensus contains:	A: 136	C: 126	G: 126	T: 127	N: 0
			IUPAC: 6	Funny: 0	*: 0

Num reads: 1
Avg. read length: 521
Reads contain 521 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 55
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1343
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 55
Contig length: 382
Avg. contig coverage: 1
Consensus contains:	A: 84	C: 96	G: 86	T: 115	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 382
Reads contain 382 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 56
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1342
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 56
Contig length: 574
Avg. contig coverage: 1
Consensus contains:	A: 178	C: 145	G: 103	T: 136	N: 0
			IUPAC: 12	Funny: 0	*: 0

Num reads: 1
Avg. read length: 574
Reads contain 574 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 57
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1341
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 57
Contig length: 414
Avg. contig coverage: 1
Consensus contains:	A: 95	C: 127	G: 87	T: 104	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 414
Reads contain 414 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 58
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1340
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 58
Contig length: 572
Avg. contig coverage: 1
Consensus contains:	A: 194	C: 113	G: 109	T: 154	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 572
Reads contain 570 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 59
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1339
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 59
Contig length: 621
Avg. contig coverage: 1
Consensus contains:	A: 164	C: 163	G: 128	T: 158	N: 0
			IUPAC: 8	Funny: 0	*: 0

Num reads: 1
Avg. read length: 621
Reads contain 621 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 60
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1338
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 60
Contig length: 410
Avg. contig coverage: 1
Consensus contains:	A: 80	C: 117	G: 103	T: 101	N: 0
			IUPAC: 9	Funny: 0	*: 0

Num reads: 1
Avg. read length: 410
Reads contain 410 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 61
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1337
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 61
Contig length: 693
Avg. contig coverage: 1
Consensus contains:	A: 225	C: 180	G: 119	T: 168	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 693
Reads contain 693 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 62
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1336
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 62
Contig length: 449
Avg. contig coverage: 1
Consensus contains:	A: 100	C: 132	G: 115	T: 100	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 1
Avg. read length: 449
Reads contain 449 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 63
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1335
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 63
Contig length: 608
Avg. contig coverage: 1
Consensus contains:	A: 184	C: 118	G: 156	T: 150	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 608
Reads contain 608 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 64
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1334
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 64
Contig length: 482
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 131	G: 103	T: 148	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 482
Reads contain 482 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 65
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1333
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 65
Contig length: 408
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 86	G: 89	T: 107	N: 0
			IUPAC: 12	Funny: 0	*: 0

Num reads: 1
Avg. read length: 408
Reads contain 408 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 66
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1332
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 66
Contig length: 924
Avg. contig coverage: 1
Consensus contains:	A: 277	C: 178	G: 187	T: 281	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 924
Reads contain 924 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 67
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1331
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 67
Contig length: 569
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 142	G: 144	T: 124	N: 0
			IUPAC: 29	Funny: 0	*: 0

Num reads: 1
Avg. read length: 569
Reads contain 569 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 68
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1330
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 68
Contig length: 584
Avg. contig coverage: 1
Consensus contains:	A: 180	C: 139	G: 109	T: 143	N: 0
			IUPAC: 13	Funny: 0	*: 0

Num reads: 1
Avg. read length: 584
Reads contain 584 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 69
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1329
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 69
Contig length: 937
Avg. contig coverage: 1
Consensus contains:	A: 253	C: 280	G: 185	T: 218	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 937
Reads contain 937 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 70
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1328
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 70
Contig length: 597
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 131	G: 133	T: 177	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 597
Reads contain 597 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 71
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1327
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 71
Contig length: 637
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 187	G: 104	T: 239	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 637
Reads contain 637 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 72
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1326
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 72
Contig length: 520
Avg. contig coverage: 1
Consensus contains:	A: 140	C: 112	G: 127	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 520
Reads contain 520 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 73
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1325
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 73
Contig length: 425
Avg. contig coverage: 1
Consensus contains:	A: 91	C: 93	G: 151	T: 89	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 425
Reads contain 425 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 74
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1324
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 74
Contig length: 378
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 100	G: 54	T: 84	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 1
Avg. read length: 378
Reads contain 378 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 75
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1323
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 75
Contig length: 447
Avg. contig coverage: 1
Consensus contains:	A: 100	C: 106	G: 137	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 447
Reads contain 447 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 76
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1322
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 76
Contig length: 483
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 100	G: 109	T: 124	N: 0
			IUPAC: 4	Funny: 0	*: 0

Num reads: 1
Avg. read length: 483
Reads contain 483 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 77
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1321
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 77
Contig length: 1030
Avg. contig coverage: 1
Consensus contains:	A: 246	C: 212	G: 296	T: 275	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 1030
Reads contain 1030 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 78
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1320
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 78
Contig length: 527
Avg. contig coverage: 1
Consensus contains:	A: 164	C: 125	G: 100	T: 138	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 527
Reads contain 527 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 79
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1319
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 79
Contig length: 664
Avg. contig coverage: 1
Consensus contains:	A: 182	C: 166	G: 137	T: 178	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 664
Reads contain 664 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 80
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1318
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 80
Contig length: 537
Avg. contig coverage: 1
Consensus contains:	A: 159	C: 141	G: 119	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 537
Reads contain 537 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 81
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1317
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 81
Contig length: 502
Avg. contig coverage: 1
Consensus contains:	A: 165	C: 112	G: 117	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 502
Reads contain 502 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 82
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1316
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 82
Contig length: 368
Avg. contig coverage: 1
Consensus contains:	A: 95	C: 89	G: 69	T: 110	N: 0
			IUPAC: 5	Funny: 0	*: 0

Num reads: 1
Avg. read length: 368
Reads contain 368 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 83
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1315
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 83
Contig length: 333
Avg. contig coverage: 1
Consensus contains:	A: 88	C: 71	G: 75	T: 95	N: 0
			IUPAC: 4	Funny: 0	*: 0

Num reads: 1
Avg. read length: 333
Reads contain 333 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 84
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1314
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 84
Contig length: 761
Avg. contig coverage: 1
Consensus contains:	A: 227	C: 170	G: 146	T: 210	N: 0
			IUPAC: 8	Funny: 0	*: 0

Num reads: 1
Avg. read length: 761
Reads contain 761 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 85
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1313
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 85
Contig length: 563
Avg. contig coverage: 1
Consensus contains:	A: 154	C: 112	G: 126	T: 169	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 1
Avg. read length: 563
Reads contain 563 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 86
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1312
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 86
Contig length: 530
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 126	G: 141	T: 130	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 530
Reads contain 530 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 87
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1311
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 87
Contig length: 490
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 84	G: 106	T: 154	N: 1
			IUPAC: 2	Funny: 0	*: 0

Num reads: 1
Avg. read length: 490
Reads contain 489 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 88
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1310
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 88
Contig length: 472
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 144	G: 84	T: 129	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 472
Reads contain 472 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 89
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1309
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 89
Contig length: 562
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 138	G: 142	T: 163	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 562
Reads contain 562 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 90
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1308
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 90
Contig length: 857
Avg. contig coverage: 1
Consensus contains:	A: 233	C: 160	G: 190	T: 272	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 1
Avg. read length: 857
Reads contain 857 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 91
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1307
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 91
Contig length: 552
Avg. contig coverage: 1
Consensus contains:	A: 167	C: 109	G: 142	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 552
Reads contain 552 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 92
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1306
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 92
Contig length: 523
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 138	G: 115	T: 128	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 523
Reads contain 522 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 93
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1305
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 93
Contig length: 381
Avg. contig coverage: 1
Consensus contains:	A: 88	C: 90	G: 90	T: 94	N: 0
			IUPAC: 19	Funny: 0	*: 0

Num reads: 1
Avg. read length: 381
Reads contain 381 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 94
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1304
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 94
Contig length: 388
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 84	G: 93	T: 69	N: 0
			IUPAC: 22	Funny: 0	*: 0

Num reads: 1
Avg. read length: 388
Reads contain 388 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 95
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1303
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 95
Contig length: 469
Avg. contig coverage: 1
Consensus contains:	A: 164	C: 124	G: 75	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 469
Reads contain 469 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 96
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1302
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 96
Contig length: 539
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 92	G: 133	T: 167	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 539
Reads contain 539 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 97
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1301
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 97
Contig length: 489
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 125	G: 90	T: 158	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 489
Reads contain 489 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 98
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1300
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 98
Contig length: 377
Avg. contig coverage: 1
Consensus contains:	A: 62	C: 85	G: 116	T: 114	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 377
Reads contain 377 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 99
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1299
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 99
Contig length: 504
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 126	G: 91	T: 158	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 504
Reads contain 504 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 100
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1298
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 100
Contig length: 494
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 118	G: 127	T: 140	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 494
Reads contain 494 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 101
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1297
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 101
Contig length: 465
Avg. contig coverage: 1
Consensus contains:	A: 134	C: 90	G: 118	T: 122	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 465
Reads contain 465 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 102
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1296
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 102
Contig length: 370
Avg. contig coverage: 1
Consensus contains:	A: 67	C: 84	G: 122	T: 96	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 370
Reads contain 370 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 103
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1295
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 103
Contig length: 508
Avg. contig coverage: 1
Consensus contains:	A: 159	C: 97	G: 128	T: 123	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 508
Reads contain 508 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 104
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1294
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 104
Contig length: 591
Avg. contig coverage: 1
Consensus contains:	A: 142	C: 121	G: 180	T: 145	N: 0
			IUPAC: 3	Funny: 0	*: 0

Num reads: 1
Avg. read length: 591
Reads contain 591 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 105
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1293
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 105
Contig length: 505
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 103	G: 128	T: 135	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 505
Reads contain 505 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 106
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1292
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 106
Contig length: 548
Avg. contig coverage: 1
Consensus contains:	A: 149	C: 119	G: 138	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 548
Reads contain 548 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 107
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1291
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 107
Contig length: 491
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 121	G: 95	T: 140	N: 0
			IUPAC: 3	Funny: 0	*: 0

Num reads: 1
Avg. read length: 491
Reads contain 491 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 108
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1290
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 108
Contig length: 541
Avg. contig coverage: 1
Consensus contains:	A: 153	C: 126	G: 111	T: 150	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 541
Reads contain 541 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 109
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1289
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 109
Contig length: 468
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 92	G: 82	T: 148	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 468
Reads contain 468 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 110
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1288
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 110
Contig length: 611
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 203	G: 81	T: 195	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 611
Reads contain 611 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 111
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1287
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 111
Contig length: 457
Avg. contig coverage: 1
Consensus contains:	A: 113	C: 122	G: 105	T: 115	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 1
Avg. read length: 457
Reads contain 457 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 112
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1286
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 112
Contig length: 401
Avg. contig coverage: 1
Consensus contains:	A: 77	C: 125	G: 102	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 401
Reads contain 401 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 113
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1285
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 113
Contig length: 438
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 114	G: 124	T: 103	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 438
Reads contain 438 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 114
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1284
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 114
Contig length: 437
Avg. contig coverage: 1
Consensus contains:	A: 167	C: 94	G: 75	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 437
Reads contain 437 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 115
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1283
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 115
Contig length: 587
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 131	G: 168	T: 132	N: 0
			IUPAC: 13	Funny: 0	*: 0

Num reads: 1
Avg. read length: 587
Reads contain 587 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 116
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1282
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 116
Contig length: 482
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 129	G: 106	T: 119	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 482
Reads contain 482 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 117
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1281
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 117
Contig length: 428
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 115	G: 88	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 428
Reads contain 428 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 118
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1280
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 118
Contig length: 516
Avg. contig coverage: 1
Consensus contains:	A: 158	C: 82	G: 122	T: 137	N: 0
			IUPAC: 17	Funny: 0	*: 0

Num reads: 1
Avg. read length: 516
Reads contain 516 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 119
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1279
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 119
Contig length: 513
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 129	G: 132	T: 132	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 513
Reads contain 513 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 120
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1278
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 120
Contig length: 489
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 128	G: 85	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 489
Reads contain 489 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 121
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1277
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 121
Contig length: 507
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 99	G: 140	T: 143	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 507
Reads contain 507 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 122
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1276
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 122
Contig length: 550
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 176	G: 114	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 550
Reads contain 550 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 123
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1275
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 123
Contig length: 540
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 150	G: 108	T: 158	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 540
Reads contain 540 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 124
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1274
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 124
Contig length: 502
Avg. contig coverage: 1
Consensus contains:	A: 123	C: 105	G: 130	T: 143	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 502
Reads contain 502 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 125
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1273
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 125
Contig length: 545
Avg. contig coverage: 1
Consensus contains:	A: 150	C: 108	G: 132	T: 144	N: 1
			IUPAC: 10	Funny: 0	*: 0

Num reads: 1
Avg. read length: 545
Reads contain 544 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 126
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1272
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 126
Contig length: 423
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 97	G: 117	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 423
Reads contain 423 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 127
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1271
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 127
Contig length: 429
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 93	G: 104	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 429
Reads contain 429 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 128
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1270
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 128
Contig length: 397
Avg. contig coverage: 1
Consensus contains:	A: 142	C: 92	G: 64	T: 98	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 397
Reads contain 397 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 129
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1269
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 129
Contig length: 587
Avg. contig coverage: 1
Consensus contains:	A: 152	C: 135	G: 113	T: 178	N: 0
			IUPAC: 9	Funny: 0	*: 0

Num reads: 1
Avg. read length: 587
Reads contain 587 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 130
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1268
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 130
Contig length: 379
Avg. contig coverage: 1
Consensus contains:	A: 64	C: 120	G: 99	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 379
Reads contain 379 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 131
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1267
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 131
Contig length: 421
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 119	G: 67	T: 120	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 421
Reads contain 420 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 132
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1266
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 132
Contig length: 435
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 93	G: 98	T: 119	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 435
Reads contain 435 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 133
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1265
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 133
Contig length: 889
Avg. contig coverage: 1
Consensus contains:	A: 246	C: 191	G: 210	T: 234	N: 0
			IUPAC: 8	Funny: 0	*: 0

Num reads: 1
Avg. read length: 889
Reads contain 889 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 134
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1264
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 134
Contig length: 507
Avg. contig coverage: 1
Consensus contains:	A: 159	C: 145	G: 88	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 507
Reads contain 507 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 135
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1263
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 135
Contig length: 575
Avg. contig coverage: 1
Consensus contains:	A: 150	C: 108	G: 151	T: 166	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 575
Reads contain 575 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 136
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1262
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 136
Contig length: 521
Avg. contig coverage: 1
Consensus contains:	A: 123	C: 130	G: 144	T: 113	N: 0
			IUPAC: 11	Funny: 0	*: 0

Num reads: 1
Avg. read length: 521
Reads contain 521 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 137
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1261
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 137
Contig length: 607
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 155	G: 162	T: 158	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 607
Reads contain 607 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 138
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1260
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 138
Contig length: 598
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 145	G: 173	T: 150	N: 0
			IUPAC: 12	Funny: 0	*: 0

Num reads: 1
Avg. read length: 598
Reads contain 598 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 139
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1259
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 139
Contig length: 660
Avg. contig coverage: 1
Consensus contains:	A: 172	C: 126	G: 155	T: 185	N: 0
			IUPAC: 22	Funny: 0	*: 0

Num reads: 1
Avg. read length: 660
Reads contain 660 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 140
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1258
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 140
Contig length: 360
Avg. contig coverage: 1
Consensus contains:	A: 67	C: 88	G: 82	T: 121	N: 1
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 360
Reads contain 359 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 141
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1257
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 141
Contig length: 385
Avg. contig coverage: 1
Consensus contains:	A: 93	C: 86	G: 119	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 385
Reads contain 385 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 142
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1256
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 142
Contig length: 465
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 105	G: 119	T: 109	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 465
Reads contain 465 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 143
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1255
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 143
Contig length: 471
Avg. contig coverage: 1
Consensus contains:	A: 159	C: 122	G: 56	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 471
Reads contain 471 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 144
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1254
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 144
Contig length: 337
Avg. contig coverage: 1
Consensus contains:	A: 78	C: 83	G: 68	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 337
Reads contain 337 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 145
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1253
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 145
Contig length: 417
Avg. contig coverage: 1
Consensus contains:	A: 123	C: 95	G: 108	T: 90	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 417
Reads contain 417 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 146
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1252
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 146
Contig length: 570
Avg. contig coverage: 1
Consensus contains:	A: 161	C: 143	G: 101	T: 165	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 570
Reads contain 570 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 147
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1251
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 147
Contig length: 471
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 110	G: 111	T: 130	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 471
Reads contain 471 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 148
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1250
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 148
Contig length: 351
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 86	G: 45	T: 109	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 351
Reads contain 351 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 149
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1249
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 149
Contig length: 659
Avg. contig coverage: 1
Consensus contains:	A: 182	C: 186	G: 122	T: 164	N: 0
			IUPAC: 5	Funny: 0	*: 0

Num reads: 1
Avg. read length: 659
Reads contain 659 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 150
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1248
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 150
Contig length: 367
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 54	G: 86	T: 137	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 367
Reads contain 367 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 151
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1247
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 151
Contig length: 668
Avg. contig coverage: 1
Consensus contains:	A: 195	C: 130	G: 164	T: 157	N: 0
			IUPAC: 22	Funny: 0	*: 0

Num reads: 1
Avg. read length: 668
Reads contain 668 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 152
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1246
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 152
Contig length: 592
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 96	G: 166	T: 183	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 592
Reads contain 592 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 153
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1245
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 153
Contig length: 324
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 74	G: 48	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 324
Reads contain 324 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 154
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1244
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 154
Contig length: 333
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 87	G: 60	T: 80	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 333
Reads contain 333 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 155
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1243
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 155
Contig length: 338
Avg. contig coverage: 1
Consensus contains:	A: 87	C: 83	G: 79	T: 88	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 338
Reads contain 338 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 156
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1242
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 156
Contig length: 453
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 87	G: 104	T: 143	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 453
Reads contain 453 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 157
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1241
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 157
Contig length: 356
Avg. contig coverage: 1
Consensus contains:	A: 87	C: 77	G: 124	T: 68	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 356
Reads contain 356 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 158
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1240
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 158
Contig length: 624
Avg. contig coverage: 1
Consensus contains:	A: 133	C: 152	G: 132	T: 206	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 624
Reads contain 624 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 159
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1239
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 159
Contig length: 395
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 99	G: 97	T: 93	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 395
Reads contain 395 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 160
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1238
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 160
Contig length: 418
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 95	G: 91	T: 119	N: 0
			IUPAC: 4	Funny: 0	*: 0

Num reads: 1
Avg. read length: 418
Reads contain 418 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 161
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1237
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 161
Contig length: 523
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 148	G: 122	T: 126	N: 0
			IUPAC: 10	Funny: 0	*: 0

Num reads: 1
Avg. read length: 523
Reads contain 523 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 162
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1236
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 162
Contig length: 547
Avg. contig coverage: 1
Consensus contains:	A: 150	C: 145	G: 104	T: 148	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 547
Reads contain 547 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 163
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1235
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 163
Contig length: 383
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 54	G: 74	T: 137	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 383
Reads contain 383 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 164
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1234
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 164
Contig length: 334
Avg. contig coverage: 1
Consensus contains:	A: 145	C: 47	G: 69	T: 73	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 334
Reads contain 334 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 165
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1233
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 165
Contig length: 654
Avg. contig coverage: 1
Consensus contains:	A: 216	C: 144	G: 124	T: 170	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 654
Reads contain 654 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 166
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1232
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 166
Contig length: 519
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 123	G: 134	T: 132	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 1
Avg. read length: 519
Reads contain 519 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 167
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1231
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 167
Contig length: 392
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 65	G: 87	T: 121	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 392
Reads contain 392 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 168
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1230
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 168
Contig length: 307
Avg. contig coverage: 1
Consensus contains:	A: 68	C: 90	G: 62	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 307
Reads contain 307 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 169
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1229
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 169
Contig length: 577
Avg. contig coverage: 1
Consensus contains:	A: 158	C: 116	G: 140	T: 163	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 577
Reads contain 577 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 170
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1228
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 170
Contig length: 666
Avg. contig coverage: 1
Consensus contains:	A: 169	C: 167	G: 145	T: 183	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 1
Avg. read length: 666
Reads contain 666 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 171
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1227
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 171
Contig length: 635
Avg. contig coverage: 1
Consensus contains:	A: 179	C: 157	G: 106	T: 188	N: 0
			IUPAC: 5	Funny: 0	*: 0

Num reads: 1
Avg. read length: 635
Reads contain 635 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 172
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1226
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 172
Contig length: 442
Avg. contig coverage: 1
Consensus contains:	A: 121	C: 115	G: 100	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 442
Reads contain 442 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 173
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1225
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 173
Contig length: 529
Avg. contig coverage: 1
Consensus contains:	A: 161	C: 119	G: 103	T: 146	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 529
Reads contain 529 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 174
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1224
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 174
Contig length: 443
Avg. contig coverage: 1
Consensus contains:	A: 153	C: 101	G: 73	T: 114	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 1
Avg. read length: 443
Reads contain 443 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 175
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1223
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 175
Contig length: 423
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 96	G: 102	T: 88	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 1
Avg. read length: 423
Reads contain 423 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 176
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1222
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 176
Contig length: 515
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 113	G: 122	T: 149	N: 0
			IUPAC: 27	Funny: 0	*: 0

Num reads: 1
Avg. read length: 515
Reads contain 515 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 177
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1221
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 177
Contig length: 595
Avg. contig coverage: 1
Consensus contains:	A: 160	C: 155	G: 108	T: 170	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 1
Avg. read length: 595
Reads contain 595 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 178
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1220
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 178
Contig length: 425
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 108	G: 75	T: 110	N: 0
			IUPAC: 4	Funny: 0	*: 0

Num reads: 1
Avg. read length: 425
Reads contain 425 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 179
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1219
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 179
Contig length: 441
Avg. contig coverage: 1
Consensus contains:	A: 108	C: 77	G: 132	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 441
Reads contain 441 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 180
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1218
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 180
Contig length: 391
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 110	G: 41	T: 115	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 391
Reads contain 390 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 181
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1217
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 181
Contig length: 330
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 65	G: 103	T: 78	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 1
Avg. read length: 330
Reads contain 330 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 182
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1216
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 182
Contig length: 362
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 99	G: 48	T: 97	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 362
Reads contain 362 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 183
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1215
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 183
Contig length: 479
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 108	G: 111	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 479
Reads contain 479 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 184
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1214
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 184
Contig length: 394
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 103	G: 76	T: 96	N: 1
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 394
Reads contain 393 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 185
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1213
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 185
Contig length: 352
Avg. contig coverage: 1
Consensus contains:	A: 91	C: 66	G: 94	T: 98	N: 0
			IUPAC: 3	Funny: 0	*: 0

Num reads: 1
Avg. read length: 352
Reads contain 352 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 186
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1212
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 186
Contig length: 523
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 84	G: 179	T: 143	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 523
Reads contain 522 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 187
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1211
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 187
Contig length: 368
Avg. contig coverage: 1
Consensus contains:	A: 84	C: 89	G: 84	T: 110	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 368
Reads contain 368 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 188
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1210
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 188
Contig length: 421
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 119	G: 82	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 421
Reads contain 421 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 189
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1209
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 189
Contig length: 395
Avg. contig coverage: 1
Consensus contains:	A: 89	C: 83	G: 112	T: 110	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 395
Reads contain 394 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 190
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1208
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 190
Contig length: 301
Avg. contig coverage: 1
Consensus contains:	A: 91	C: 68	G: 52	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 301
Reads contain 301 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 191
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1207
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 191
Contig length: 596
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 206	G: 160	T: 119	N: 0
			IUPAC: 10	Funny: 0	*: 0

Num reads: 1
Avg. read length: 596
Reads contain 596 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 192
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1206
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 192
Contig length: 438
Avg. contig coverage: 1
Consensus contains:	A: 123	C: 131	G: 77	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 438
Reads contain 438 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 193
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1205
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 193
Contig length: 402
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 76	G: 91	T: 133	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 402
Reads contain 402 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 194
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1204
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 194
Contig length: 275
Avg. contig coverage: 1
Consensus contains:	A: 81	C: 53	G: 77	T: 64	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 275
Reads contain 275 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 195
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1203
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 195
Contig length: 384
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 106	G: 84	T: 90	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 1
Avg. read length: 384
Reads contain 384 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 196
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1202
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 196
Contig length: 594
Avg. contig coverage: 1
Consensus contains:	A: 158	C: 155	G: 111	T: 155	N: 0
			IUPAC: 15	Funny: 0	*: 0

Num reads: 1
Avg. read length: 594
Reads contain 594 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 197
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1201
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 197
Contig length: 401
Avg. contig coverage: 1
Consensus contains:	A: 93	C: 81	G: 97	T: 129	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 401
Reads contain 400 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 198
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1200
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 198
Contig length: 751
Avg. contig coverage: 1
Consensus contains:	A: 203	C: 147	G: 179	T: 222	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 751
Reads contain 751 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 199
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1199
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 199
Contig length: 402
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 98	G: 80	T: 126	N: 0
			IUPAC: 4	Funny: 0	*: 0

Num reads: 1
Avg. read length: 402
Reads contain 402 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 200
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1198
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 200
Contig length: 417
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 74	G: 143	T: 106	N: 0
			IUPAC: 4	Funny: 0	*: 0

Num reads: 1
Avg. read length: 417
Reads contain 417 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 201
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1197
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 201
Contig length: 422
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 134	G: 55	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 422
Reads contain 422 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 202
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1196
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 202
Contig length: 664
Avg. contig coverage: 1
Consensus contains:	A: 181	C: 179	G: 141	T: 161	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 1
Avg. read length: 664
Reads contain 664 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 203
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1195
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 203
Contig length: 500
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 115	G: 95	T: 157	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 500
Reads contain 500 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 204
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1194
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 204
Contig length: 438
Avg. contig coverage: 1
Consensus contains:	A: 123	C: 127	G: 92	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 438
Reads contain 438 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 205
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1193
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 205
Contig length: 673
Avg. contig coverage: 1
Consensus contains:	A: 172	C: 152	G: 159	T: 170	N: 0
			IUPAC: 20	Funny: 0	*: 0

Num reads: 1
Avg. read length: 673
Reads contain 673 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 206
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1192
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 206
Contig length: 544
Avg. contig coverage: 1
Consensus contains:	A: 179	C: 125	G: 100	T: 139	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 544
Reads contain 544 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 207
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1191
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 207
Contig length: 462
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 114	G: 102	T: 120	N: 1
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 462
Reads contain 461 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 208
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1190
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 208
Contig length: 500
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 144	G: 98	T: 119	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 500
Reads contain 500 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 209
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1189
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 209
Contig length: 510
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 128	G: 108	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 510
Reads contain 510 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 210
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1188
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 210
Contig length: 449
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 119	G: 98	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 449
Reads contain 449 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 211
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1187
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 211
Contig length: 550
Avg. contig coverage: 1
Consensus contains:	A: 204	C: 138	G: 81	T: 125	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 550
Reads contain 548 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 212
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1186
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 212
Contig length: 380
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 92	G: 81	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 380
Reads contain 380 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 213
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1185
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 213
Contig length: 466
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 123	G: 94	T: 114	N: 0
			IUPAC: 25	Funny: 0	*: 0

Num reads: 1
Avg. read length: 466
Reads contain 466 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 214
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1184
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 214
Contig length: 504
Avg. contig coverage: 1
Consensus contains:	A: 165	C: 91	G: 91	T: 157	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 504
Reads contain 504 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 215
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1183
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 215
Contig length: 604
Avg. contig coverage: 1
Consensus contains:	A: 185	C: 132	G: 117	T: 167	N: 0
			IUPAC: 3	Funny: 0	*: 0

Num reads: 1
Avg. read length: 604
Reads contain 604 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 216
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1182
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 216
Contig length: 599
Avg. contig coverage: 1
Consensus contains:	A: 158	C: 147	G: 123	T: 164	N: 1
			IUPAC: 6	Funny: 0	*: 0

Num reads: 1
Avg. read length: 599
Reads contain 598 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 217
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1181
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 217
Contig length: 474
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 119	G: 113	T: 129	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 1
Avg. read length: 474
Reads contain 474 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 218
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1180
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 218
Contig length: 313
Avg. contig coverage: 1
Consensus contains:	A: 74	C: 79	G: 94	T: 66	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 313
Reads contain 313 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 219
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1179
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 219
Contig length: 475
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 101	G: 140	T: 106	N: 0
			IUPAC: 3	Funny: 0	*: 0

Num reads: 1
Avg. read length: 475
Reads contain 475 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 220
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1178
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 220
Contig length: 612
Avg. contig coverage: 1
Consensus contains:	A: 154	C: 168	G: 130	T: 160	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 612
Reads contain 612 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 221
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1177
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 221
Contig length: 619
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 142	G: 161	T: 155	N: 0
			IUPAC: 15	Funny: 0	*: 0

Num reads: 1
Avg. read length: 619
Reads contain 619 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 222
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1176
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 222
Contig length: 535
Avg. contig coverage: 1
Consensus contains:	A: 153	C: 112	G: 132	T: 120	N: 0
			IUPAC: 18	Funny: 0	*: 0

Num reads: 1
Avg. read length: 535
Reads contain 535 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 223
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1175
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 223
Contig length: 489
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 144	G: 108	T: 98	N: 3
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 489
Reads contain 486 bases, 3 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 224
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1174
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 224
Contig length: 845
Avg. contig coverage: 1
Consensus contains:	A: 225	C: 187	G: 178	T: 244	N: 0
			IUPAC: 11	Funny: 0	*: 0

Num reads: 1
Avg. read length: 845
Reads contain 845 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 225
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1173
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 225
Contig length: 536
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 125	G: 125	T: 160	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 536
Reads contain 534 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 226
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1172
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 226
Contig length: 842
Avg. contig coverage: 1
Consensus contains:	A: 260	C: 172	G: 170	T: 240	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 842
Reads contain 842 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 227
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1171
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 227
Contig length: 384
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 103	G: 76	T: 90	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 384
Reads contain 384 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 228
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1170
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 228
Contig length: 274
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 60	G: 57	T: 56	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 274
Reads contain 274 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 229
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1169
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 229
Contig length: 354
Avg. contig coverage: 1
Consensus contains:	A: 91	C: 69	G: 85	T: 109	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 354
Reads contain 354 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 230
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1168
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 230
Contig length: 522
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 106	G: 120	T: 155	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 522
Reads contain 522 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 231
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1167
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 231
Contig length: 519
Avg. contig coverage: 1
Consensus contains:	A: 157	C: 61	G: 124	T: 166	N: 0
			IUPAC: 11	Funny: 0	*: 0

Num reads: 1
Avg. read length: 519
Reads contain 519 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 232
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1166
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 232
Contig length: 391
Avg. contig coverage: 1
Consensus contains:	A: 113	C: 103	G: 82	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 391
Reads contain 391 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 233
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1165
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 233
Contig length: 299
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 82	G: 36	T: 78	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 299
Reads contain 298 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 234
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1164
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 234
Contig length: 441
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 111	G: 89	T: 110	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 441
Reads contain 441 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 235
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1163
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 235
Contig length: 729
Avg. contig coverage: 1
Consensus contains:	A: 186	C: 164	G: 176	T: 200	N: 0
			IUPAC: 3	Funny: 0	*: 0

Num reads: 1
Avg. read length: 729
Reads contain 729 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 236
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1162
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 236
Contig length: 373
Avg. contig coverage: 1
Consensus contains:	A: 150	C: 86	G: 37	T: 100	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 373
Reads contain 373 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 237
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1161
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 237
Contig length: 457
Avg. contig coverage: 1
Consensus contains:	A: 145	C: 93	G: 102	T: 103	N: 0
			IUPAC: 14	Funny: 0	*: 0

Num reads: 1
Avg. read length: 457
Reads contain 457 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 238
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1160
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 238
Contig length: 486
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 91	G: 129	T: 116	N: 3
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 486
Reads contain 483 bases, 3 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 239
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1159
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 239
Contig length: 448
Avg. contig coverage: 1
Consensus contains:	A: 136	C: 82	G: 77	T: 153	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 448
Reads contain 448 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 240
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1158
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 240
Contig length: 422
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 104	G: 98	T: 107	N: 0
			IUPAC: 12	Funny: 0	*: 0

Num reads: 1
Avg. read length: 422
Reads contain 422 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 241
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1157
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 241
Contig length: 514
Avg. contig coverage: 1
Consensus contains:	A: 164	C: 86	G: 131	T: 118	N: 0
			IUPAC: 15	Funny: 0	*: 0

Num reads: 1
Avg. read length: 514
Reads contain 514 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 242
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1156
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 242
Contig length: 280
Avg. contig coverage: 1
Consensus contains:	A: 70	C: 58	G: 79	T: 70	N: 0
			IUPAC: 3	Funny: 0	*: 0

Num reads: 1
Avg. read length: 280
Reads contain 280 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 243
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1155
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 243
Contig length: 450
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 115	G: 111	T: 100	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 1
Avg. read length: 450
Reads contain 450 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 244
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1154
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 244
Contig length: 390
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 106	G: 109	T: 97	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 1
Avg. read length: 390
Reads contain 390 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 245
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1153
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 245
Contig length: 434
Avg. contig coverage: 1
Consensus contains:	A: 108	C: 97	G: 128	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 434
Reads contain 434 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 246
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1152
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 246
Contig length: 494
Avg. contig coverage: 1
Consensus contains:	A: 158	C: 121	G: 106	T: 109	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 494
Reads contain 494 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 247
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1151
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 247
Contig length: 505
Avg. contig coverage: 1
Consensus contains:	A: 149	C: 119	G: 102	T: 132	N: 0
			IUPAC: 3	Funny: 0	*: 0

Num reads: 1
Avg. read length: 505
Reads contain 505 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 248
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1150
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 248
Contig length: 572
Avg. contig coverage: 1
Consensus contains:	A: 153	C: 167	G: 121	T: 122	N: 0
			IUPAC: 9	Funny: 0	*: 0

Num reads: 1
Avg. read length: 572
Reads contain 572 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 249
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1149
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 249
Contig length: 303
Avg. contig coverage: 1
Consensus contains:	A: 85	C: 37	G: 105	T: 74	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 1
Avg. read length: 303
Reads contain 303 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 250
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1148
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 250
Contig length: 480
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 133	G: 105	T: 122	N: 0
			IUPAC: 3	Funny: 0	*: 0

Num reads: 1
Avg. read length: 480
Reads contain 480 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 251
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1147
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 251
Contig length: 812
Avg. contig coverage: 1
Consensus contains:	A: 195	C: 189	G: 234	T: 192	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 1
Avg. read length: 812
Reads contain 812 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 252
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1146
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 252
Contig length: 474
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 96	G: 152	T: 119	N: 0
			IUPAC: 9	Funny: 0	*: 0

Num reads: 1
Avg. read length: 474
Reads contain 474 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 253
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1145
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 253
Contig length: 764
Avg. contig coverage: 1
Consensus contains:	A: 209	C: 158	G: 184	T: 213	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 764
Reads contain 764 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 254
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1144
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 254
Contig length: 519
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 133	G: 131	T: 130	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 519
Reads contain 519 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 255
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1143
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 255
Contig length: 479
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 91	G: 142	T: 149	N: 0
			IUPAC: 3	Funny: 0	*: 0

Num reads: 1
Avg. read length: 479
Reads contain 479 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 256
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1142
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 256
Contig length: 706
Avg. contig coverage: 1
Consensus contains:	A: 167	C: 119	G: 210	T: 210	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 706
Reads contain 706 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 257
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1141
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 257
Contig length: 454
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 126	G: 93	T: 102	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 1
Avg. read length: 454
Reads contain 454 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 258
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1140
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 258
Contig length: 238
Avg. contig coverage: 1
Consensus contains:	A: 69	C: 80	G: 38	T: 51	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 238
Reads contain 238 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 259
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1139
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 259
Contig length: 374
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 74	G: 91	T: 106	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 374
Reads contain 374 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 260
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1138
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 260
Contig length: 411
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 85	G: 117	T: 111	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 411
Reads contain 411 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 261
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1137
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 261
Contig length: 561
Avg. contig coverage: 1
Consensus contains:	A: 175	C: 132	G: 90	T: 164	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 561
Reads contain 561 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 262
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1136
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 262
Contig length: 223
Avg. contig coverage: 1
Consensus contains:	A: 56	C: 35	G: 73	T: 58	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 223
Reads contain 223 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 263
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1135
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 263
Contig length: 273
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 63	G: 53	T: 80	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 273
Reads contain 273 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 264
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1134
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 264
Contig length: 419
Avg. contig coverage: 1
Consensus contains:	A: 136	C: 89	G: 74	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 419
Reads contain 419 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 265
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1133
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 265
Contig length: 470
Avg. contig coverage: 1
Consensus contains:	A: 115	C: 117	G: 115	T: 120	N: 0
			IUPAC: 3	Funny: 0	*: 0

Num reads: 1
Avg. read length: 470
Reads contain 470 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 266
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1132
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 266
Contig length: 377
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 88	G: 89	T: 94	N: 0
			IUPAC: 12	Funny: 0	*: 0

Num reads: 1
Avg. read length: 377
Reads contain 377 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 267
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1131
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 267
Contig length: 530
Avg. contig coverage: 1
Consensus contains:	A: 142	C: 103	G: 106	T: 173	N: 0
			IUPAC: 6	Funny: 0	*: 0

Num reads: 1
Avg. read length: 530
Reads contain 530 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 268
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1130
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 268
Contig length: 539
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 157	G: 138	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 539
Reads contain 539 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 269
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1129
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 269
Contig length: 447
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 84	G: 110	T: 121	N: 0
			IUPAC: 14	Funny: 0	*: 0

Num reads: 1
Avg. read length: 447
Reads contain 447 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 270
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1128
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 270
Contig length: 510
Avg. contig coverage: 1
Consensus contains:	A: 158	C: 97	G: 115	T: 138	N: 1
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 510
Reads contain 509 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 271
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1127
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 271
Contig length: 396
Avg. contig coverage: 1
Consensus contains:	A: 87	C: 84	G: 123	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 396
Reads contain 396 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 272
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1126
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 272
Contig length: 305
Avg. contig coverage: 1
Consensus contains:	A: 91	C: 95	G: 54	T: 64	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 305
Reads contain 304 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 273
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1125
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 273
Contig length: 254
Avg. contig coverage: 1
Consensus contains:	A: 49	C: 42	G: 83	T: 80	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 254
Reads contain 254 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 274
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1124
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 274
Contig length: 268
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 59	G: 47	T: 59	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 268
Reads contain 268 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 275
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1123
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 275
Contig length: 509
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 114	G: 119	T: 136	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 509
Reads contain 509 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 276
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1122
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 276
Contig length: 313
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 56	G: 66	T: 80	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 313
Reads contain 313 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 277
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1121
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 277
Contig length: 343
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 83	G: 74	T: 80	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 343
Reads contain 343 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 278
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1120
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 278
Contig length: 319
Avg. contig coverage: 1
Consensus contains:	A: 115	C: 64	G: 55	T: 72	N: 0
			IUPAC: 13	Funny: 0	*: 0

Num reads: 1
Avg. read length: 319
Reads contain 319 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 279
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1119
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 279
Contig length: 850
Avg. contig coverage: 1
Consensus contains:	A: 230	C: 153	G: 219	T: 248	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 850
Reads contain 850 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 280
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1118
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 280
Contig length: 400
Avg. contig coverage: 1
Consensus contains:	A: 108	C: 91	G: 116	T: 79	N: 0
			IUPAC: 6	Funny: 0	*: 0

Num reads: 1
Avg. read length: 400
Reads contain 400 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 281
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1117
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 281
Contig length: 460
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 91	G: 139	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 460
Reads contain 460 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 282
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1116
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 282
Contig length: 423
Avg. contig coverage: 1
Consensus contains:	A: 113	C: 56	G: 115	T: 134	N: 0
			IUPAC: 5	Funny: 0	*: 0

Num reads: 1
Avg. read length: 423
Reads contain 423 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 283
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1115
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 283
Contig length: 559
Avg. contig coverage: 1
Consensus contains:	A: 181	C: 135	G: 112	T: 119	N: 1
			IUPAC: 11	Funny: 0	*: 0

Num reads: 1
Avg. read length: 559
Reads contain 558 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 284
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1114
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 284
Contig length: 334
Avg. contig coverage: 1
Consensus contains:	A: 77	C: 49	G: 120	T: 87	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 334
Reads contain 334 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 285
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1113
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 285
Contig length: 213
Avg. contig coverage: 1
Consensus contains:	A: 59	C: 98	G: 24	T: 32	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 213
Reads contain 213 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 286
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1112
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 286
Contig length: 328
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 74	G: 67	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 328
Reads contain 328 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 287
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1111
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 287
Contig length: 393
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 88	G: 71	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 393
Reads contain 393 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 288
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1110
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 288
Contig length: 272
Avg. contig coverage: 1
Consensus contains:	A: 38	C: 90	G: 69	T: 75	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 272
Reads contain 272 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 289
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1109
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 289
Contig length: 538
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 121	G: 142	T: 140	N: 0
			IUPAC: 4	Funny: 0	*: 0

Num reads: 1
Avg. read length: 538
Reads contain 538 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 290
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1108
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 290
Contig length: 700
Avg. contig coverage: 1
Consensus contains:	A: 202	C: 170	G: 117	T: 211	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 700
Reads contain 700 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 291
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1107
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 291
Contig length: 985
Avg. contig coverage: 1
Consensus contains:	A: 252	C: 249	G: 248	T: 236	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 985
Reads contain 985 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 292
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1106
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 292
Contig length: 694
Avg. contig coverage: 1
Consensus contains:	A: 158	C: 164	G: 170	T: 201	N: 0
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 694
Reads contain 694 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 293
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1105
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 293
Contig length: 199
Avg. contig coverage: 1
Consensus contains:	A: 46	C: 50	G: 52	T: 49	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 1
Avg. read length: 199
Reads contain 199 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 294
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1104
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 294
Contig length: 442
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 62	G: 86	T: 169	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 442
Reads contain 442 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 295
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1103
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 295
Contig length: 445
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 100	G: 123	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 445
Reads contain 445 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 296
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1102
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 296
Contig length: 625
Avg. contig coverage: 1
Consensus contains:	A: 167	C: 156	G: 126	T: 166	N: 1
			IUPAC: 9	Funny: 0	*: 0

Num reads: 1
Avg. read length: 625
Reads contain 624 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 297
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1101
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 297
Contig length: 353
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 67	G: 70	T: 94	N: 0
			IUPAC: 3	Funny: 0	*: 0

Num reads: 1
Avg. read length: 353
Reads contain 353 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 298
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1100
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 298
Contig length: 446
Avg. contig coverage: 1
Consensus contains:	A: 182	C: 94	G: 57	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 446
Reads contain 446 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 299
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1099
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 299
Contig length: 623
Avg. contig coverage: 1
Consensus contains:	A: 208	C: 147	G: 134	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 623
Reads contain 623 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 300
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1098
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 300
Contig length: 309
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 64	G: 72	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 309
Reads contain 309 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 301
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1097
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 301
Contig length: 593
Avg. contig coverage: 1
Consensus contains:	A: 144	C: 143	G: 167	T: 139	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 593
Reads contain 593 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 302
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1096
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 302
Contig length: 382
Avg. contig coverage: 1
Consensus contains:	A: 136	C: 90	G: 66	T: 88	N: 0
			IUPAC: 2	Funny: 0	*: 0

Num reads: 1
Avg. read length: 382
Reads contain 382 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 303
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1095
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 303
Contig length: 502
Avg. contig coverage: 1
Consensus contains:	A: 145	C: 101	G: 114	T: 137	N: 0
			IUPAC: 5	Funny: 0	*: 0

Num reads: 1
Avg. read length: 502
Reads contain 502 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 304
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1094
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 304
Contig length: 732
Avg. contig coverage: 1
Consensus contains:	A: 148	C: 138	G: 212	T: 232	N: 1
			IUPAC: 1	Funny: 0	*: 0

Num reads: 1
Avg. read length: 732
Reads contain 731 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 305
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1093
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 305
Contig length: 287
Avg. contig coverage: 1
Consensus contains:	A: 54	C: 75	G: 62	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 287
Reads contain 287 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 306
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1092
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 306
Contig length: 271
Avg. contig coverage: 1
Consensus contains:	A: 49	C: 85	G: 75	T: 62	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 271
Reads contain 271 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 307
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1091
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 307
Contig length: 676
Avg. contig coverage: 1
Consensus contains:	A: 148	C: 186	G: 155	T: 170	N: 0
			IUPAC: 17	Funny: 0	*: 0

Num reads: 1
Avg. read length: 676
Reads contain 676 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 308
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1090
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 308
Contig length: 610
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 134	G: 168	T: 162	N: 0
			IUPAC: 11	Funny: 0	*: 0

Num reads: 1
Avg. read length: 610
Reads contain 610 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 309
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1089
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 309
Contig length: 626
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 149	G: 165	T: 150	N: 0
			IUPAC: 35	Funny: 0	*: 0

Num reads: 1
Avg. read length: 626
Reads contain 626 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 310
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1088
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 310
Contig length: 904
Avg. contig coverage: 1
Consensus contains:	A: 222	C: 169	G: 206	T: 280	N: 0
			IUPAC: 27	Funny: 0	*: 0

Num reads: 1
Avg. read length: 904
Reads contain 904 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 311
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1087
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 311
Contig length: 860
Avg. contig coverage: 1
Consensus contains:	A: 273	C: 192	G: 176	T: 214	N: 0
			IUPAC: 5	Funny: 0	*: 0

Num reads: 1
Avg. read length: 860
Reads contain 860 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 312
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1086
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 312
Contig length: 568
Avg. contig coverage: 1
Consensus contains:	A: 150	C: 130	G: 134	T: 152	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 568
Reads contain 566 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 313
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1085
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 313
Contig length: 246
Avg. contig coverage: 1
Consensus contains:	A: 54	C: 54	G: 62	T: 76	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 246
Reads contain 246 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 314
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1084
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 314
Contig length: 568
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 133	G: 108	T: 184	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 568
Reads contain 568 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 315
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1083
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 315
Contig length: 478
Avg. contig coverage: 1
Consensus contains:	A: 168	C: 120	G: 83	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 478
Reads contain 478 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 316
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1082
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 316
Contig length: 549
Avg. contig coverage: 1
Consensus contains:	A: 115	C: 192	G: 112	T: 130	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 549
Reads contain 549 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 317
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1081
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 317
Contig length: 578
Avg. contig coverage: 1
Consensus contains:	A: 175	C: 140	G: 116	T: 147	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 578
Reads contain 578 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 318
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1080
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 318
Contig length: 356
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 83	G: 79	T: 91	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 356
Reads contain 356 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 319
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1079
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 319
Contig length: 441
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 118	G: 107	T: 99	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 441
Reads contain 441 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 320
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1078
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 320
Contig length: 639
Avg. contig coverage: 1
Consensus contains:	A: 185	C: 125	G: 143	T: 185	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 639
Reads contain 638 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 321
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1077
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 321
Contig length: 495
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 133	G: 107	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 495
Reads contain 495 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 322
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1076
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 322
Contig length: 391
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 59	G: 136	T: 95	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 391
Reads contain 391 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 323
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1075
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 323
Contig length: 223
Avg. contig coverage: 1
Consensus contains:	A: 53	C: 38	G: 87	T: 45	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 223
Reads contain 223 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 324
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1074
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 324
Contig length: 429
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 116	G: 99	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 429
Reads contain 429 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 325
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1073
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 325
Contig length: 477
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 101	G: 114	T: 140	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 477
Reads contain 477 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 326
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1072
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 326
Contig length: 247
Avg. contig coverage: 1
Consensus contains:	A: 81	C: 54	G: 74	T: 38	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 247
Reads contain 247 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 327
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1071
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 327
Contig length: 155
Avg. contig coverage: 1
Consensus contains:	A: 47	C: 47	G: 39	T: 22	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 155
Reads contain 155 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 328
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1070
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 328
Contig length: 296
Avg. contig coverage: 1
Consensus contains:	A: 87	C: 71	G: 61	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 296
Reads contain 296 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 329
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1069
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 329
Contig length: 454
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 115	G: 125	T: 97	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 454
Reads contain 453 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 330
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1068
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 330
Contig length: 171
Avg. contig coverage: 1
Consensus contains:	A: 39	C: 43	G: 48	T: 40	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 171
Reads contain 170 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 331
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1067
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 331
Contig length: 134
Avg. contig coverage: 1
Consensus contains:	A: 41	C: 27	G: 38	T: 28	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 134
Reads contain 134 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 332
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1066
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 332
Contig length: 174
Avg. contig coverage: 1
Consensus contains:	A: 40	C: 50	G: 47	T: 37	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 174
Reads contain 174 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 333
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1065
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 333
Contig length: 318
Avg. contig coverage: 1
Consensus contains:	A: 70	C: 88	G: 94	T: 66	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 318
Reads contain 318 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 334
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1064
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 334
Contig length: 395
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 98	G: 84	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 395
Reads contain 395 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 335
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1063
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 335
Contig length: 136
Avg. contig coverage: 1
Consensus contains:	A: 26	C: 30	G: 36	T: 44	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 136
Reads contain 136 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 336
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1062
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 336
Contig length: 404
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 79	G: 91	T: 121	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 404
Reads contain 403 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 337
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1061
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 337
Contig length: 264
Avg. contig coverage: 1
Consensus contains:	A: 51	C: 64	G: 92	T: 57	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 264
Reads contain 264 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 338
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1060
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 338
Contig length: 467
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 131	G: 109	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 467
Reads contain 467 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 339
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1059
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 339
Contig length: 430
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 115	G: 75	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 430
Reads contain 430 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 340
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1058
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 340
Contig length: 466
Avg. contig coverage: 1
Consensus contains:	A: 153	C: 90	G: 117	T: 105	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 466
Reads contain 465 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 341
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1057
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 341
Contig length: 429
Avg. contig coverage: 1
Consensus contains:	A: 83	C: 107	G: 120	T: 118	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 429
Reads contain 428 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 342
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1056
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 342
Contig length: 396
Avg. contig coverage: 1
Consensus contains:	A: 84	C: 87	G: 118	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 396
Reads contain 396 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 343
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1055
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 343
Contig length: 427
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 107	G: 100	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 427
Reads contain 427 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 344
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1054
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 344
Contig length: 459
Avg. contig coverage: 1
Consensus contains:	A: 129	C: 107	G: 113	T: 110	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 459
Reads contain 459 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 345
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1053
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 345
Contig length: 384
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 85	G: 117	T: 80	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 384
Reads contain 384 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 346
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1052
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 346
Contig length: 417
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 118	G: 114	T: 71	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 417
Reads contain 417 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 347
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1051
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 347
Contig length: 295
Avg. contig coverage: 1
Consensus contains:	A: 73	C: 69	G: 70	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 295
Reads contain 295 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 348
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1050
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 348
Contig length: 133
Avg. contig coverage: 1
Consensus contains:	A: 53	C: 26	G: 30	T: 24	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 133
Reads contain 133 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 349
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1049
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 349
Contig length: 237
Avg. contig coverage: 1
Consensus contains:	A: 74	C: 55	G: 60	T: 48	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 237
Reads contain 237 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 350
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1048
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 350
Contig length: 333
Avg. contig coverage: 1
Consensus contains:	A: 92	C: 95	G: 59	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 333
Reads contain 333 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 351
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1047
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 351
Contig length: 452
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 113	G: 118	T: 109	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 452
Reads contain 452 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 352
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1046
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 352
Contig length: 323
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 75	G: 60	T: 98	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 323
Reads contain 323 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 353
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1045
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 353
Contig length: 483
Avg. contig coverage: 1
Consensus contains:	A: 148	C: 131	G: 76	T: 128	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 483
Reads contain 483 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 354
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1044
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 354
Contig length: 426
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 102	G: 105	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 426
Reads contain 426 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 355
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1043
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 355
Contig length: 400
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 87	G: 106	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 400
Reads contain 400 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 356
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1042
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 356
Contig length: 157
Avg. contig coverage: 1
Consensus contains:	A: 37	C: 35	G: 46	T: 39	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 157
Reads contain 157 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 357
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1041
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 357
Contig length: 371
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 88	G: 75	T: 106	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 371
Reads contain 370 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 358
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1040
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 358
Contig length: 436
Avg. contig coverage: 1
Consensus contains:	A: 148	C: 96	G: 59	T: 133	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 436
Reads contain 436 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 359
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1039
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 359
Contig length: 475
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 119	G: 85	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 475
Reads contain 475 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 360
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1038
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 360
Contig length: 318
Avg. contig coverage: 1
Consensus contains:	A: 67	C: 90	G: 80	T: 81	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 318
Reads contain 318 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 361
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1037
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 361
Contig length: 340
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 94	G: 66	T: 97	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 340
Reads contain 339 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 362
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1036
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 362
Contig length: 530
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 108	G: 140	T: 150	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 530
Reads contain 530 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 363
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1035
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 363
Contig length: 348
Avg. contig coverage: 1
Consensus contains:	A: 129	C: 71	G: 68	T: 80	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 348
Reads contain 348 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 364
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1034
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 364
Contig length: 142
Avg. contig coverage: 1
Consensus contains:	A: 37	C: 24	G: 32	T: 49	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 142
Reads contain 142 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 365
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1033
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 365
Contig length: 512
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 139	G: 95	T: 176	N: 3
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 512
Reads contain 509 bases, 3 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 366
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1032
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 366
Contig length: 474
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 127	G: 129	T: 113	N: 4
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 474
Reads contain 470 bases, 4 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 367
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1031
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 367
Contig length: 284
Avg. contig coverage: 1
Consensus contains:	A: 68	C: 70	G: 67	T: 77	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 284
Reads contain 282 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 368
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1030
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 368
Contig length: 551
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 118	G: 136	T: 134	N: 7
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 551
Reads contain 544 bases, 7 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 369
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1029
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 369
Contig length: 394
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 100	G: 66	T: 124	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 394
Reads contain 393 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 370
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1028
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 370
Contig length: 362
Avg. contig coverage: 1
Consensus contains:	A: 92	C: 88	G: 68	T: 114	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 362
Reads contain 362 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 371
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1027
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 371
Contig length: 465
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 140	G: 97	T: 121	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 465
Reads contain 464 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 372
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1026
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 372
Contig length: 265
Avg. contig coverage: 1
Consensus contains:	A: 81	C: 46	G: 64	T: 73	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 265
Reads contain 264 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 373
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1025
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 373
Contig length: 503
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 116	G: 114	T: 148	N: 3
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 503
Reads contain 500 bases, 3 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 374
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1024
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 374
Contig length: 412
Avg. contig coverage: 1
Consensus contains:	A: 152	C: 98	G: 70	T: 92	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 412
Reads contain 412 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 375
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1023
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 375
Contig length: 275
Avg. contig coverage: 1
Consensus contains:	A: 61	C: 60	G: 53	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 275
Reads contain 275 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 376
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1022
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 376
Contig length: 317
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 50	G: 79	T: 98	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 317
Reads contain 317 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 377
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1021
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 377
Contig length: 592
Avg. contig coverage: 1
Consensus contains:	A: 161	C: 138	G: 126	T: 162	N: 5
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 592
Reads contain 587 bases, 5 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 378
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1020
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 378
Contig length: 310
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 55	G: 35	T: 97	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 310
Reads contain 309 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 379
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1019
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 379
Contig length: 558
Avg. contig coverage: 1
Consensus contains:	A: 155	C: 139	G: 101	T: 163	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 558
Reads contain 558 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 380
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1018
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 380
Contig length: 461
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 98	G: 118	T: 131	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 461
Reads contain 461 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 381
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1017
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 381
Contig length: 508
Avg. contig coverage: 1
Consensus contains:	A: 140	C: 109	G: 134	T: 124	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 508
Reads contain 507 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 382
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1016
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 382
Contig length: 585
Avg. contig coverage: 1
Consensus contains:	A: 167	C: 162	G: 94	T: 159	N: 3
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 585
Reads contain 582 bases, 3 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 383
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1015
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 383
Contig length: 355
Avg. contig coverage: 1
Consensus contains:	A: 95	C: 92	G: 67	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 355
Reads contain 355 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 384
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1014
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 384
Contig length: 299
Avg. contig coverage: 1
Consensus contains:	A: 56	C: 67	G: 50	T: 125	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 299
Reads contain 298 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 385
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1013
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 385
Contig length: 453
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 100	G: 120	T: 108	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 453
Reads contain 452 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 386
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1012
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 386
Contig length: 530
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 124	G: 160	T: 116	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 530
Reads contain 528 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 387
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1011
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 387
Contig length: 477
Avg. contig coverage: 1
Consensus contains:	A: 140	C: 137	G: 99	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 477
Reads contain 477 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 388
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1010
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 388
Contig length: 577
Avg. contig coverage: 1
Consensus contains:	A: 159	C: 159	G: 127	T: 131	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 577
Reads contain 576 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 389
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1009
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 389
Contig length: 446
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 89	G: 85	T: 128	N: 3
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 446
Reads contain 443 bases, 3 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 390
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1008
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 390
Contig length: 243
Avg. contig coverage: 1
Consensus contains:	A: 59	C: 65	G: 67	T: 52	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 243
Reads contain 243 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 391
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1007
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 391
Contig length: 530
Avg. contig coverage: 1
Consensus contains:	A: 148	C: 100	G: 128	T: 153	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 530
Reads contain 529 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 392
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1006
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 392
Contig length: 428
Avg. contig coverage: 1
Consensus contains:	A: 115	C: 73	G: 138	T: 101	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 428
Reads contain 427 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 393
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1005
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 393
Contig length: 555
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 160	G: 95	T: 161	N: 8
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 555
Reads contain 547 bases, 8 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 394
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1004
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 394
Contig length: 480
Avg. contig coverage: 1
Consensus contains:	A: 129	C: 103	G: 123	T: 125	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 480
Reads contain 480 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 395
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1003
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 395
Contig length: 367
Avg. contig coverage: 1
Consensus contains:	A: 121	C: 85	G: 64	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 367
Reads contain 367 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 396
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1002
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 396
Contig length: 386
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 108	G: 56	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 386
Reads contain 386 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 397
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1001
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 397
Contig length: 577
Avg. contig coverage: 1
Consensus contains:	A: 165	C: 137	G: 116	T: 155	N: 4
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 577
Reads contain 573 bases, 4 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 398
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1000
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 398
Contig length: 443
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 113	G: 96	T: 114	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 443
Reads contain 442 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 399
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 999
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 399
Contig length: 330
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 77	G: 74	T: 74	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 330
Reads contain 330 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 400
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 998
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 400
Contig length: 621
Avg. contig coverage: 1
Consensus contains:	A: 162	C: 140	G: 167	T: 148	N: 4
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 621
Reads contain 617 bases, 4 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 401
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 997
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 401
Contig length: 538
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 121	G: 147	T: 128	N: 5
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 538
Reads contain 533 bases, 5 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 402
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 996
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 402
Contig length: 451
Avg. contig coverage: 1
Consensus contains:	A: 108	C: 104	G: 134	T: 103	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 451
Reads contain 449 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 403
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 995
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 403
Contig length: 321
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 66	G: 53	T: 82	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 321
Reads contain 320 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 404
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 994
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 404
Contig length: 418
Avg. contig coverage: 1
Consensus contains:	A: 87	C: 87	G: 131	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 418
Reads contain 418 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 405
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 993
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 405
Contig length: 589
Avg. contig coverage: 1
Consensus contains:	A: 157	C: 127	G: 164	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 589
Reads contain 589 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 406
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 992
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 406
Contig length: 432
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 120	G: 75	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 432
Reads contain 432 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 407
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 991
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 407
Contig length: 277
Avg. contig coverage: 1
Consensus contains:	A: 67	C: 58	G: 85	T: 67	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 277
Reads contain 277 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 408
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 990
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 408
Contig length: 227
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 57	G: 25	T: 69	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 227
Reads contain 227 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 409
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 989
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 409
Contig length: 195
Avg. contig coverage: 1
Consensus contains:	A: 52	C: 52	G: 35	T: 56	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 195
Reads contain 195 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 410
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 988
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 410
Contig length: 155
Avg. contig coverage: 1
Consensus contains:	A: 62	C: 26	G: 29	T: 38	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 155
Reads contain 155 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 411
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 987
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 411
Contig length: 166
Avg. contig coverage: 1
Consensus contains:	A: 23	C: 38	G: 47	T: 58	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 166
Reads contain 166 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 412
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 986
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 412
Contig length: 217
Avg. contig coverage: 1
Consensus contains:	A: 57	C: 44	G: 54	T: 62	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 217
Reads contain 217 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 413
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 985
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 413
Contig length: 163
Avg. contig coverage: 1
Consensus contains:	A: 68	C: 27	G: 23	T: 45	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 163
Reads contain 163 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 414
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 984
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 414
Contig length: 212
Avg. contig coverage: 1
Consensus contains:	A: 83	C: 41	G: 36	T: 52	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 212
Reads contain 212 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 415
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 983
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 415
Contig length: 421
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 59	G: 99	T: 161	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 421
Reads contain 421 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 416
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 982
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 416
Contig length: 212
Avg. contig coverage: 1
Consensus contains:	A: 70	C: 51	G: 42	T: 49	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 212
Reads contain 212 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 417
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 981
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 417
Contig length: 175
Avg. contig coverage: 1
Consensus contains:	A: 30	C: 40	G: 53	T: 52	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 175
Reads contain 175 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 418
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 980
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 418
Contig length: 155
Avg. contig coverage: 1
Consensus contains:	A: 56	C: 18	G: 17	T: 64	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 155
Reads contain 155 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 419
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 979
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 419
Contig length: 188
Avg. contig coverage: 1
Consensus contains:	A: 86	C: 43	G: 27	T: 32	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 188
Reads contain 188 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 420
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 978
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 420
Contig length: 120
Avg. contig coverage: 1
Consensus contains:	A: 47	C: 22	G: 11	T: 40	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 120
Reads contain 120 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 421
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 977
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 421
Contig length: 199
Avg. contig coverage: 1
Consensus contains:	A: 81	C: 38	G: 26	T: 54	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 199
Reads contain 199 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 422
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 976
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 422
Contig length: 566
Avg. contig coverage: 1
Consensus contains:	A: 151	C: 117	G: 135	T: 162	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 566
Reads contain 565 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 423
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 975
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 423
Contig length: 400
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 76	G: 102	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 400
Reads contain 400 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 424
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 974
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 424
Contig length: 347
Avg. contig coverage: 1
Consensus contains:	A: 91	C: 67	G: 101	T: 87	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 347
Reads contain 346 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 425
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 973
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 425
Contig length: 139
Avg. contig coverage: 1
Consensus contains:	A: 29	C: 36	G: 34	T: 40	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 139
Reads contain 139 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 426
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 972
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 426
Contig length: 158
Avg. contig coverage: 1
Consensus contains:	A: 48	C: 45	G: 6	T: 58	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 158
Reads contain 157 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 427
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 971
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 427
Contig length: 129
Avg. contig coverage: 1
Consensus contains:	A: 39	C: 34	G: 19	T: 37	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 129
Reads contain 129 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 428
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 970
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 428
Contig length: 226
Avg. contig coverage: 1
Consensus contains:	A: 61	C: 48	G: 64	T: 53	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 226
Reads contain 226 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 429
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 969
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 429
Contig length: 349
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 66	G: 103	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 349
Reads contain 349 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 430
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 968
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 430
Contig length: 357
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 99	G: 51	T: 76	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 357
Reads contain 357 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 431
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 967
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 431
Contig length: 379
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 94	G: 91	T: 96	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 379
Reads contain 378 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 432
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 966
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 432
Contig length: 208
Avg. contig coverage: 1
Consensus contains:	A: 58	C: 43	G: 57	T: 50	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 208
Reads contain 208 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 433
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 965
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 433
Contig length: 146
Avg. contig coverage: 1
Consensus contains:	A: 51	C: 24	G: 32	T: 39	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 146
Reads contain 146 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 434
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 964
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 434
Contig length: 209
Avg. contig coverage: 1
Consensus contains:	A: 49	C: 47	G: 47	T: 65	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 209
Reads contain 208 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 435
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 963
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 435
Contig length: 412
Avg. contig coverage: 1
Consensus contains:	A: 147	C: 94	G: 66	T: 105	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 412
Reads contain 412 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 436
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 962
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 436
Contig length: 435
Avg. contig coverage: 1
Consensus contains:	A: 157	C: 83	G: 71	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 435
Reads contain 435 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 437
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 961
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 437
Contig length: 447
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 97	G: 110	T: 107	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 447
Reads contain 446 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 438
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 960
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 438
Contig length: 349
Avg. contig coverage: 1
Consensus contains:	A: 77	C: 118	G: 85	T: 69	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 349
Reads contain 349 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 439
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 959
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 439
Contig length: 308
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 67	G: 49	T: 70	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 308
Reads contain 308 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 440
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 958
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 440
Contig length: 138
Avg. contig coverage: 1
Consensus contains:	A: 22	C: 40	G: 45	T: 31	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 138
Reads contain 138 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 441
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 957
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 441
Contig length: 89
Avg. contig coverage: 1
Consensus contains:	A: 30	C: 24	G: 18	T: 17	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 89
Reads contain 89 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 442
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 956
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 442
Contig length: 379
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 71	G: 99	T: 79	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 379
Reads contain 379 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 443
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 955
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 443
Contig length: 455
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 76	G: 121	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 455
Reads contain 455 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 444
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 954
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 444
Contig length: 458
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 105	G: 123	T: 110	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 458
Reads contain 457 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 445
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 953
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 445
Contig length: 357
Avg. contig coverage: 1
Consensus contains:	A: 78	C: 98	G: 86	T: 95	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 357
Reads contain 357 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 446
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 952
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 446
Contig length: 370
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 80	G: 63	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 370
Reads contain 370 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 447
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 951
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 447
Contig length: 318
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 76	G: 75	T: 88	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 318
Reads contain 318 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 448
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 950
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 448
Contig length: 286
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 61	G: 38	T: 80	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 286
Reads contain 286 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 449
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 949
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 449
Contig length: 173
Avg. contig coverage: 1
Consensus contains:	A: 50	C: 34	G: 34	T: 55	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 173
Reads contain 173 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 450
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 948
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 450
Contig length: 523
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 128	G: 124	T: 138	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 523
Reads contain 522 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 451
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 947
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 451
Contig length: 425
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 97	G: 121	T: 95	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 425
Reads contain 424 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 452
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 946
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 452
Contig length: 412
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 106	G: 99	T: 105	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 412
Reads contain 412 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 453
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 945
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 453
Contig length: 340
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 53	G: 68	T: 137	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 340
Reads contain 340 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 454
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 944
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 454
Contig length: 527
Avg. contig coverage: 1
Consensus contains:	A: 165	C: 105	G: 114	T: 143	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 527
Reads contain 527 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 455
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 943
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 455
Contig length: 230
Avg. contig coverage: 1
Consensus contains:	A: 67	C: 55	G: 53	T: 55	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 230
Reads contain 230 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 456
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 942
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 456
Contig length: 378
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 77	G: 91	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 378
Reads contain 378 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 457
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 941
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 457
Contig length: 198
Avg. contig coverage: 1
Consensus contains:	A: 45	C: 50	G: 59	T: 44	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 198
Reads contain 198 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 458
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 940
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 458
Contig length: 398
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 120	G: 90	T: 79	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 398
Reads contain 398 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 459
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 939
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 459
Contig length: 326
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 79	G: 72	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 326
Reads contain 326 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 460
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 938
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 460
Contig length: 248
Avg. contig coverage: 1
Consensus contains:	A: 54	C: 83	G: 53	T: 58	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 248
Reads contain 248 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 461
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 937
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 461
Contig length: 436
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 94	G: 95	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 436
Reads contain 436 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 462
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 936
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 462
Contig length: 391
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 85	G: 55	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 391
Reads contain 391 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 463
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 935
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 463
Contig length: 324
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 88	G: 78	T: 64	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 324
Reads contain 324 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 464
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 934
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 464
Contig length: 413
Avg. contig coverage: 1
Consensus contains:	A: 149	C: 94	G: 62	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 413
Reads contain 413 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 465
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 933
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 465
Contig length: 529
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 151	G: 92	T: 172	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 529
Reads contain 529 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 466
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 932
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 466
Contig length: 460
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 104	G: 94	T: 130	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 460
Reads contain 460 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 467
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 931
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 467
Contig length: 472
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 125	G: 104	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 472
Reads contain 472 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 468
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 930
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 468
Contig length: 422
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 113	G: 68	T: 98	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 422
Reads contain 422 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 469
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 929
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 469
Contig length: 572
Avg. contig coverage: 1
Consensus contains:	A: 152	C: 134	G: 115	T: 171	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 572
Reads contain 572 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 470
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 928
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 470
Contig length: 571
Avg. contig coverage: 1
Consensus contains:	A: 149	C: 126	G: 139	T: 157	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 571
Reads contain 571 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 471
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 927
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 471
Contig length: 263
Avg. contig coverage: 1
Consensus contains:	A: 64	C: 59	G: 63	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 263
Reads contain 263 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 472
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 926
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 472
Contig length: 514
Avg. contig coverage: 1
Consensus contains:	A: 164	C: 158	G: 61	T: 131	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 514
Reads contain 514 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 473
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 925
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 473
Contig length: 322
Avg. contig coverage: 1
Consensus contains:	A: 62	C: 106	G: 68	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 322
Reads contain 322 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 474
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 924
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 474
Contig length: 145
Avg. contig coverage: 1
Consensus contains:	A: 33	C: 24	G: 48	T: 40	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 145
Reads contain 145 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 475
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 923
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 475
Contig length: 532
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 126	G: 108	T: 159	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 532
Reads contain 532 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 476
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 922
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 476
Contig length: 322
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 58	G: 57	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 322
Reads contain 322 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 477
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 921
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 477
Contig length: 291
Avg. contig coverage: 1
Consensus contains:	A: 75	C: 65	G: 73	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 291
Reads contain 291 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 478
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 920
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 478
Contig length: 113
Avg. contig coverage: 1
Consensus contains:	A: 23	C: 29	G: 27	T: 34	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 113
Reads contain 113 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 479
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 919
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 479
Contig length: 501
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 115	G: 101	T: 146	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 501
Reads contain 501 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 480
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 918
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 480
Contig length: 554
Avg. contig coverage: 1
Consensus contains:	A: 151	C: 121	G: 132	T: 150	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 554
Reads contain 554 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 481
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 917
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 481
Contig length: 214
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 37	G: 13	T: 66	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 214
Reads contain 214 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 482
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 916
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 482
Contig length: 442
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 131	G: 108	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 442
Reads contain 442 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 483
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 915
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 483
Contig length: 386
Avg. contig coverage: 1
Consensus contains:	A: 140	C: 84	G: 75	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 386
Reads contain 386 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 484
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 914
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 484
Contig length: 525
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 116	G: 119	T: 144	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 525
Reads contain 525 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 485
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 913
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 485
Contig length: 385
Avg. contig coverage: 1
Consensus contains:	A: 95	C: 124	G: 70	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 385
Reads contain 385 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 486
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 912
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 486
Contig length: 234
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 31	G: 35	T: 66	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 234
Reads contain 234 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 487
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 911
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 487
Contig length: 389
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 74	G: 106	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 389
Reads contain 389 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 488
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 910
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 488
Contig length: 469
Avg. contig coverage: 1
Consensus contains:	A: 163	C: 108	G: 66	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 469
Reads contain 469 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 489
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 909
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 489
Contig length: 534
Avg. contig coverage: 1
Consensus contains:	A: 159	C: 111	G: 128	T: 135	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 534
Reads contain 533 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 490
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 908
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 490
Contig length: 406
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 97	G: 59	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 406
Reads contain 406 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 491
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 907
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 491
Contig length: 305
Avg. contig coverage: 1
Consensus contains:	A: 77	C: 83	G: 67	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 305
Reads contain 305 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 492
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 906
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 492
Contig length: 97
Avg. contig coverage: 1
Consensus contains:	A: 22	C: 17	G: 37	T: 21	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 97
Reads contain 97 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 493
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 905
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 493
Contig length: 496
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 97	G: 140	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 496
Reads contain 496 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 494
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 904
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 494
Contig length: 352
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 86	G: 48	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 352
Reads contain 352 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 495
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 903
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 495
Contig length: 311
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 77	G: 54	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 311
Reads contain 311 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 496
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 902
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 496
Contig length: 356
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 97	G: 106	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 356
Reads contain 356 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 497
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 901
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 497
Contig length: 543
Avg. contig coverage: 1
Consensus contains:	A: 157	C: 138	G: 114	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 543
Reads contain 543 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 498
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 900
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 498
Contig length: 463
Avg. contig coverage: 1
Consensus contains:	A: 113	C: 100	G: 118	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 463
Reads contain 463 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 499
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 899
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 499
Contig length: 215
Avg. contig coverage: 1
Consensus contains:	A: 48	C: 65	G: 51	T: 51	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 215
Reads contain 215 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 500
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 898
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 500
Contig length: 419
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 115	G: 82	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 419
Reads contain 419 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 501
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 897
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 501
Contig length: 89
Avg. contig coverage: 1
Consensus contains:	A: 34	C: 17	G: 16	T: 22	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 89
Reads contain 89 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 502
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 896
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 502
Contig length: 112
Avg. contig coverage: 1
Consensus contains:	A: 20	C: 18	G: 43	T: 31	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 112
Reads contain 112 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 503
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 895
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 503
Contig length: 282
Avg. contig coverage: 1
Consensus contains:	A: 38	C: 79	G: 77	T: 88	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 282
Reads contain 282 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 504
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 894
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 504
Contig length: 221
Avg. contig coverage: 1
Consensus contains:	A: 62	C: 57	G: 62	T: 40	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 221
Reads contain 221 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 505
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 893
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 505
Contig length: 204
Avg. contig coverage: 1
Consensus contains:	A: 36	C: 64	G: 62	T: 42	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 204
Reads contain 204 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 506
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 892
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 506
Contig length: 347
Avg. contig coverage: 1
Consensus contains:	A: 91	C: 98	G: 65	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 347
Reads contain 347 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 507
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 891
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 507
Contig length: 291
Avg. contig coverage: 1
Consensus contains:	A: 87	C: 65	G: 57	T: 82	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 291
Reads contain 291 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 508
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 890
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 508
Contig length: 241
Avg. contig coverage: 1
Consensus contains:	A: 58	C: 39	G: 80	T: 64	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 241
Reads contain 241 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 509
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 889
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 509
Contig length: 276
Avg. contig coverage: 1
Consensus contains:	A: 66	C: 56	G: 76	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 276
Reads contain 276 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 510
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 888
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 510
Contig length: 486
Avg. contig coverage: 1
Consensus contains:	A: 169	C: 110	G: 79	T: 128	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 486
Reads contain 486 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 511
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 887
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 511
Contig length: 498
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 168	G: 101	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 498
Reads contain 498 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 512
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 886
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 512
Contig length: 507
Avg. contig coverage: 1
Consensus contains:	A: 145	C: 118	G: 111	T: 133	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 507
Reads contain 507 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 513
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 885
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 513
Contig length: 537
Avg. contig coverage: 1
Consensus contains:	A: 144	C: 133	G: 104	T: 156	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 537
Reads contain 537 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 514
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 884
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 514
Contig length: 457
Avg. contig coverage: 1
Consensus contains:	A: 152	C: 76	G: 129	T: 100	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 457
Reads contain 457 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 515
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 883
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 515
Contig length: 606
Avg. contig coverage: 1
Consensus contains:	A: 151	C: 129	G: 179	T: 147	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 606
Reads contain 606 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 516
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 882
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 516
Contig length: 529
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 92	G: 117	T: 174	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 529
Reads contain 529 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 517
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 881
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 517
Contig length: 214
Avg. contig coverage: 1
Consensus contains:	A: 84	C: 36	G: 19	T: 75	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 214
Reads contain 214 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 518
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 880
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 518
Contig length: 552
Avg. contig coverage: 1
Consensus contains:	A: 167	C: 102	G: 137	T: 146	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 552
Reads contain 552 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 519
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 879
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 519
Contig length: 427
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 80	G: 99	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 427
Reads contain 427 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 520
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 878
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 520
Contig length: 498
Avg. contig coverage: 1
Consensus contains:	A: 160	C: 110	G: 89	T: 139	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 498
Reads contain 498 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 521
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 877
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 521
Contig length: 473
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 85	G: 95	T: 147	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 473
Reads contain 473 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 522
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 876
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 522
Contig length: 568
Avg. contig coverage: 1
Consensus contains:	A: 177	C: 120	G: 121	T: 150	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 568
Reads contain 568 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 523
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 875
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 523
Contig length: 501
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 135	G: 97	T: 152	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 501
Reads contain 501 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 524
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 874
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 524
Contig length: 470
Avg. contig coverage: 1
Consensus contains:	A: 134	C: 92	G: 111	T: 133	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 470
Reads contain 470 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 525
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 873
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 525
Contig length: 334
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 70	G: 92	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 334
Reads contain 334 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 526
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 872
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 526
Contig length: 524
Avg. contig coverage: 1
Consensus contains:	A: 153	C: 125	G: 123	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 524
Reads contain 524 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 527
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 871
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 527
Contig length: 657
Avg. contig coverage: 1
Consensus contains:	A: 171	C: 161	G: 107	T: 218	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 657
Reads contain 657 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 528
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 870
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 528
Contig length: 495
Avg. contig coverage: 1
Consensus contains:	A: 145	C: 131	G: 117	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 495
Reads contain 495 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 529
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 869
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 529
Contig length: 587
Avg. contig coverage: 1
Consensus contains:	A: 155	C: 131	G: 156	T: 145	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 587
Reads contain 587 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 530
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 868
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 530
Contig length: 455
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 104	G: 125	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 455
Reads contain 455 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 531
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 867
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 531
Contig length: 538
Avg. contig coverage: 1
Consensus contains:	A: 170	C: 116	G: 91	T: 161	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 538
Reads contain 538 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 532
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 866
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 532
Contig length: 551
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 99	G: 114	T: 192	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 551
Reads contain 551 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 533
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 865
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 533
Contig length: 489
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 104	G: 106	T: 146	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 489
Reads contain 488 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 534
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 864
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 534
Contig length: 254
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 44	G: 35	T: 71	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 254
Reads contain 254 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 535
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 863
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 535
Contig length: 612
Avg. contig coverage: 1
Consensus contains:	A: 147	C: 129	G: 155	T: 179	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 612
Reads contain 610 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 536
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 862
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 536
Contig length: 175
Avg. contig coverage: 1
Consensus contains:	A: 47	C: 27	G: 54	T: 47	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 175
Reads contain 175 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 537
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 861
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 537
Contig length: 459
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 91	G: 108	T: 128	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 459
Reads contain 459 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 538
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 860
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 538
Contig length: 485
Avg. contig coverage: 1
Consensus contains:	A: 121	C: 133	G: 119	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 485
Reads contain 485 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 539
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 859
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 539
Contig length: 579
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 141	G: 124	T: 190	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 579
Reads contain 579 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 540
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 858
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 540
Contig length: 311
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 81	G: 43	T: 67	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 311
Reads contain 311 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 541
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 857
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 541
Contig length: 413
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 86	G: 117	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 413
Reads contain 413 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 542
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 856
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 542
Contig length: 469
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 109	G: 110	T: 139	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 469
Reads contain 469 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 543
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 855
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 543
Contig length: 471
Avg. contig coverage: 1
Consensus contains:	A: 155	C: 143	G: 69	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 471
Reads contain 471 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 544
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 854
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 544
Contig length: 537
Avg. contig coverage: 1
Consensus contains:	A: 151	C: 120	G: 118	T: 148	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 537
Reads contain 537 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 545
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 853
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 545
Contig length: 519
Avg. contig coverage: 1
Consensus contains:	A: 147	C: 115	G: 131	T: 126	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 519
Reads contain 519 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 546
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 852
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 546
Contig length: 538
Avg. contig coverage: 1
Consensus contains:	A: 197	C: 120	G: 84	T: 137	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 538
Reads contain 538 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 547
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 851
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 547
Contig length: 600
Avg. contig coverage: 1
Consensus contains:	A: 200	C: 113	G: 143	T: 141	N: 3
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 600
Reads contain 597 bases, 3 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 548
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 850
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 548
Contig length: 405
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 100	G: 107	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 405
Reads contain 405 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 549
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 849
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 549
Contig length: 305
Avg. contig coverage: 1
Consensus contains:	A: 81	C: 58	G: 83	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 305
Reads contain 305 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 550
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 848
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 550
Contig length: 498
Avg. contig coverage: 1
Consensus contains:	A: 142	C: 105	G: 121	T: 130	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 498
Reads contain 498 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 551
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 847
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 551
Contig length: 450
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 103	G: 120	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 450
Reads contain 450 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 552
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 846
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 552
Contig length: 494
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 147	G: 102	T: 126	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 494
Reads contain 494 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 553
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 845
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 553
Contig length: 525
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 109	G: 132	T: 149	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 525
Reads contain 525 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 554
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 844
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 554
Contig length: 224
Avg. contig coverage: 1
Consensus contains:	A: 91	C: 40	G: 35	T: 58	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 224
Reads contain 224 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 555
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 843
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 555
Contig length: 510
Avg. contig coverage: 1
Consensus contains:	A: 159	C: 118	G: 87	T: 146	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 510
Reads contain 510 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 556
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 842
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 556
Contig length: 581
Avg. contig coverage: 1
Consensus contains:	A: 147	C: 170	G: 113	T: 151	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 581
Reads contain 581 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 557
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 841
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 557
Contig length: 480
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 121	G: 96	T: 136	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 480
Reads contain 480 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 558
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 840
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 558
Contig length: 290
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 73	G: 32	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 290
Reads contain 290 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 559
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 839
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 559
Contig length: 413
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 167	G: 35	T: 135	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 413
Reads contain 413 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 560
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 838
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 560
Contig length: 559
Avg. contig coverage: 1
Consensus contains:	A: 160	C: 114	G: 127	T: 158	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 559
Reads contain 559 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 561
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 837
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 561
Contig length: 340
Avg. contig coverage: 1
Consensus contains:	A: 83	C: 76	G: 107	T: 74	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 340
Reads contain 340 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 562
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 836
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 562
Contig length: 418
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 74	G: 124	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 418
Reads contain 418 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 563
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 835
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 563
Contig length: 566
Avg. contig coverage: 1
Consensus contains:	A: 154	C: 140	G: 122	T: 150	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 566
Reads contain 566 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 564
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 834
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 564
Contig length: 311
Avg. contig coverage: 1
Consensus contains:	A: 100	C: 78	G: 48	T: 85	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 311
Reads contain 311 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 565
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 833
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 565
Contig length: 554
Avg. contig coverage: 1
Consensus contains:	A: 187	C: 147	G: 71	T: 149	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 554
Reads contain 554 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 566
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 832
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 566
Contig length: 567
Avg. contig coverage: 1
Consensus contains:	A: 150	C: 104	G: 140	T: 173	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 567
Reads contain 567 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 567
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 831
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 567
Contig length: 541
Avg. contig coverage: 1
Consensus contains:	A: 150	C: 116	G: 111	T: 164	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 541
Reads contain 541 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 568
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 830
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 568
Contig length: 435
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 88	G: 75	T: 129	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 435
Reads contain 435 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 569
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 829
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 569
Contig length: 538
Avg. contig coverage: 1
Consensus contains:	A: 133	C: 116	G: 141	T: 148	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 538
Reads contain 538 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 570
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 828
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 570
Contig length: 339
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 82	G: 100	T: 75	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 339
Reads contain 339 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 571
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 827
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 571
Contig length: 460
Avg. contig coverage: 1
Consensus contains:	A: 157	C: 111	G: 66	T: 126	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 460
Reads contain 460 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 572
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 826
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 572
Contig length: 493
Avg. contig coverage: 1
Consensus contains:	A: 155	C: 100	G: 88	T: 150	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 493
Reads contain 493 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 573
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 825
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 573
Contig length: 258
Avg. contig coverage: 1
Consensus contains:	A: 66	C: 81	G: 48	T: 63	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 258
Reads contain 258 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 574
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 824
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 574
Contig length: 488
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 121	G: 115	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 488
Reads contain 488 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 575
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 823
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 575
Contig length: 466
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 122	G: 107	T: 98	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 466
Reads contain 466 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 576
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 822
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 576
Contig length: 500
Avg. contig coverage: 1
Consensus contains:	A: 163	C: 100	G: 118	T: 119	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 500
Reads contain 500 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 577
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 821
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 577
Contig length: 538
Avg. contig coverage: 1
Consensus contains:	A: 142	C: 123	G: 109	T: 164	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 538
Reads contain 538 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 578
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 820
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 578
Contig length: 542
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 154	G: 149	T: 110	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 542
Reads contain 541 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 579
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 819
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 579
Contig length: 544
Avg. contig coverage: 1
Consensus contains:	A: 133	C: 108	G: 101	T: 201	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 544
Reads contain 543 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 580
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 818
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 580
Contig length: 537
Avg. contig coverage: 1
Consensus contains:	A: 123	C: 128	G: 118	T: 168	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 537
Reads contain 537 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 581
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 817
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 581
Contig length: 559
Avg. contig coverage: 1
Consensus contains:	A: 142	C: 123	G: 117	T: 177	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 559
Reads contain 559 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 582
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 816
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 582
Contig length: 359
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 62	G: 128	T: 71	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 359
Reads contain 359 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 583
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 815
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 583
Contig length: 142
Avg. contig coverage: 1
Consensus contains:	A: 54	C: 21	G: 47	T: 20	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 142
Reads contain 142 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 584
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 814
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 584
Contig length: 352
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 74	G: 67	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 352
Reads contain 352 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 585
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 813
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 585
Contig length: 464
Avg. contig coverage: 1
Consensus contains:	A: 150	C: 127	G: 61	T: 126	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 464
Reads contain 464 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 586
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 812
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 586
Contig length: 487
Avg. contig coverage: 1
Consensus contains:	A: 147	C: 128	G: 106	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 487
Reads contain 487 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 587
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 811
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 587
Contig length: 361
Avg. contig coverage: 1
Consensus contains:	A: 83	C: 69	G: 105	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 361
Reads contain 361 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 588
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 810
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 588
Contig length: 494
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 117	G: 129	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 494
Reads contain 494 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 589
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 809
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 589
Contig length: 300
Avg. contig coverage: 1
Consensus contains:	A: 70	C: 67	G: 78	T: 85	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 300
Reads contain 300 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 590
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 808
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 590
Contig length: 326
Avg. contig coverage: 1
Consensus contains:	A: 63	C: 90	G: 86	T: 86	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 326
Reads contain 325 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 591
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 807
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 591
Contig length: 485
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 124	G: 125	T: 125	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 485
Reads contain 485 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 592
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 806
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 592
Contig length: 543
Avg. contig coverage: 1
Consensus contains:	A: 84	C: 178	G: 108	T: 173	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 543
Reads contain 543 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 593
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 805
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 593
Contig length: 656
Avg. contig coverage: 1
Consensus contains:	A: 184	C: 144	G: 162	T: 164	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 656
Reads contain 654 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 594
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 804
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 594
Contig length: 376
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 85	G: 95	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 376
Reads contain 376 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 595
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 803
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 595
Contig length: 623
Avg. contig coverage: 1
Consensus contains:	A: 171	C: 120	G: 172	T: 158	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 623
Reads contain 621 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 596
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 802
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 596
Contig length: 446
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 103	G: 117	T: 110	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 446
Reads contain 446 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 597
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 801
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 597
Contig length: 560
Avg. contig coverage: 1
Consensus contains:	A: 153	C: 131	G: 112	T: 164	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 560
Reads contain 560 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 598
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 800
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 598
Contig length: 378
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 102	G: 88	T: 91	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 378
Reads contain 378 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 599
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 799
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 599
Contig length: 553
Avg. contig coverage: 1
Consensus contains:	A: 191	C: 121	G: 109	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 553
Reads contain 553 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 600
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 798
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 600
Contig length: 661
Avg. contig coverage: 1
Consensus contains:	A: 170	C: 148	G: 168	T: 175	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 661
Reads contain 661 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 601
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 797
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 601
Contig length: 441
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 97	G: 120	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 441
Reads contain 441 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 602
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 796
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 602
Contig length: 506
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 148	G: 116	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 506
Reads contain 506 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 603
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 795
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 603
Contig length: 478
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 133	G: 93	T: 135	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 478
Reads contain 478 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 604
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 794
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 604
Contig length: 587
Avg. contig coverage: 1
Consensus contains:	A: 152	C: 107	G: 147	T: 179	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 587
Reads contain 585 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 605
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 793
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 605
Contig length: 489
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 123	G: 105	T: 130	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 489
Reads contain 489 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 606
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 792
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 606
Contig length: 523
Avg. contig coverage: 1
Consensus contains:	A: 140	C: 113	G: 96	T: 174	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 523
Reads contain 523 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 607
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 791
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 607
Contig length: 433
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 104	G: 104	T: 103	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 433
Reads contain 433 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 608
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 790
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 608
Contig length: 573
Avg. contig coverage: 1
Consensus contains:	A: 159	C: 150	G: 114	T: 150	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 573
Reads contain 573 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 609
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 789
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 609
Contig length: 545
Avg. contig coverage: 1
Consensus contains:	A: 182	C: 107	G: 147	T: 108	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 545
Reads contain 544 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 610
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 788
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 610
Contig length: 615
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 148	G: 171	T: 154	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 615
Reads contain 614 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 611
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 787
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 611
Contig length: 557
Avg. contig coverage: 1
Consensus contains:	A: 162	C: 127	G: 96	T: 172	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 557
Reads contain 557 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 612
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 786
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 612
Contig length: 559
Avg. contig coverage: 1
Consensus contains:	A: 148	C: 130	G: 102	T: 179	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 559
Reads contain 559 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 613
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 785
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 613
Contig length: 553
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 133	G: 142	T: 142	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 553
Reads contain 552 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 614
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 784
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 614
Contig length: 502
Avg. contig coverage: 1
Consensus contains:	A: 176	C: 134	G: 61	T: 131	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 502
Reads contain 502 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 615
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 783
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 615
Contig length: 473
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 98	G: 128	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 473
Reads contain 473 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 616
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 782
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 616
Contig length: 457
Avg. contig coverage: 1
Consensus contains:	A: 149	C: 104	G: 80	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 457
Reads contain 457 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 617
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 781
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 617
Contig length: 404
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 95	G: 96	T: 76	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 404
Reads contain 404 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 618
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 780
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 618
Contig length: 486
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 110	G: 124	T: 114	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 486
Reads contain 486 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 619
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 779
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 619
Contig length: 443
Avg. contig coverage: 1
Consensus contains:	A: 159	C: 94	G: 104	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 443
Reads contain 443 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 620
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 778
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 620
Contig length: 480
Avg. contig coverage: 1
Consensus contains:	A: 160	C: 111	G: 72	T: 137	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 480
Reads contain 480 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 621
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 777
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 621
Contig length: 489
Avg. contig coverage: 1
Consensus contains:	A: 134	C: 111	G: 101	T: 143	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 489
Reads contain 489 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 622
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 776
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 622
Contig length: 592
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 141	G: 150	T: 145	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 592
Reads contain 592 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 623
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 775
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 623
Contig length: 336
Avg. contig coverage: 1
Consensus contains:	A: 91	C: 54	G: 76	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 336
Reads contain 336 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 624
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 774
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 624
Contig length: 446
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 78	G: 94	T: 143	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 446
Reads contain 446 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 625
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 773
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 625
Contig length: 522
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 96	G: 141	T: 186	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 522
Reads contain 522 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 626
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 772
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 626
Contig length: 590
Avg. contig coverage: 1
Consensus contains:	A: 154	C: 124	G: 146	T: 166	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 590
Reads contain 590 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 627
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 771
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 627
Contig length: 495
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 142	G: 107	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 495
Reads contain 495 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 628
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 770
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 628
Contig length: 524
Avg. contig coverage: 1
Consensus contains:	A: 154	C: 117	G: 107	T: 146	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 524
Reads contain 524 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 629
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 769
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 629
Contig length: 159
Avg. contig coverage: 1
Consensus contains:	A: 59	C: 36	G: 23	T: 41	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 159
Reads contain 159 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 630
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 768
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 630
Contig length: 411
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 104	G: 83	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 411
Reads contain 411 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 631
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 767
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 631
Contig length: 216
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 35	G: 32	T: 55	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 216
Reads contain 216 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 632
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 766
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 632
Contig length: 382
Avg. contig coverage: 1
Consensus contains:	A: 77	C: 113	G: 128	T: 64	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 382
Reads contain 382 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 633
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 765
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 633
Contig length: 401
Avg. contig coverage: 1
Consensus contains:	A: 96	C: 74	G: 87	T: 144	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 401
Reads contain 401 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 634
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 764
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 634
Contig length: 355
Avg. contig coverage: 1
Consensus contains:	A: 129	C: 73	G: 61	T: 92	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 355
Reads contain 355 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 635
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 763
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 635
Contig length: 443
Avg. contig coverage: 1
Consensus contains:	A: 164	C: 91	G: 71	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 443
Reads contain 443 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 636
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 762
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 636
Contig length: 467
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 106	G: 112	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 467
Reads contain 467 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 637
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 761
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 637
Contig length: 384
Avg. contig coverage: 1
Consensus contains:	A: 92	C: 74	G: 120	T: 98	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 384
Reads contain 384 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 638
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 760
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 638
Contig length: 386
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 54	G: 133	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 386
Reads contain 386 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 639
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 759
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 639
Contig length: 512
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 114	G: 114	T: 143	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 512
Reads contain 512 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 640
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 758
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 640
Contig length: 418
Avg. contig coverage: 1
Consensus contains:	A: 96	C: 75	G: 79	T: 168	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 418
Reads contain 418 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 641
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 757
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 641
Contig length: 422
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 103	G: 67	T: 127	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 422
Reads contain 422 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 642
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 756
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 642
Contig length: 307
Avg. contig coverage: 1
Consensus contains:	A: 60	C: 76	G: 82	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 307
Reads contain 307 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 643
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 755
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 643
Contig length: 488
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 96	G: 127	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 488
Reads contain 488 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 644
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 754
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 644
Contig length: 675
Avg. contig coverage: 1
Consensus contains:	A: 194	C: 136	G: 156	T: 187	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 675
Reads contain 673 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 645
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 753
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 645
Contig length: 442
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 111	G: 108	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 442
Reads contain 442 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 646
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 752
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 646
Contig length: 537
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 94	G: 159	T: 153	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 537
Reads contain 537 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 647
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 751
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 647
Contig length: 465
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 107	G: 84	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 465
Reads contain 465 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 648
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 750
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 648
Contig length: 409
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 104	G: 93	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 409
Reads contain 409 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 649
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 749
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 649
Contig length: 496
Avg. contig coverage: 1
Consensus contains:	A: 169	C: 96	G: 123	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 496
Reads contain 496 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 650
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 748
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 650
Contig length: 336
Avg. contig coverage: 1
Consensus contains:	A: 126	C: 78	G: 47	T: 85	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 336
Reads contain 336 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 651
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 747
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 651
Contig length: 416
Avg. contig coverage: 1
Consensus contains:	A: 121	C: 93	G: 83	T: 119	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 416
Reads contain 416 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 652
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 746
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 652
Contig length: 447
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 77	G: 130	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 447
Reads contain 447 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 653
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 745
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 653
Contig length: 158
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 23	G: 28	T: 25	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 158
Reads contain 158 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 654
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 744
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 654
Contig length: 417
Avg. contig coverage: 1
Consensus contains:	A: 142	C: 100	G: 84	T: 91	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 417
Reads contain 417 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 655
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 743
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 655
Contig length: 486
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 117	G: 102	T: 135	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 486
Reads contain 485 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 656
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 742
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 656
Contig length: 490
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 106	G: 146	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 490
Reads contain 490 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 657
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 741
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 657
Contig length: 132
Avg. contig coverage: 1
Consensus contains:	A: 73	C: 0	G: 30	T: 29	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 132
Reads contain 132 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 658
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 740
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 658
Contig length: 377
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 75	G: 75	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 377
Reads contain 377 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 659
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 739
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 659
Contig length: 472
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 101	G: 85	T: 158	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 472
Reads contain 472 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 660
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 738
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 660
Contig length: 595
Avg. contig coverage: 1
Consensus contains:	A: 177	C: 130	G: 180	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 595
Reads contain 595 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 661
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 737
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 661
Contig length: 457
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 120	G: 103	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 457
Reads contain 457 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 662
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 736
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 662
Contig length: 494
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 126	G: 103	T: 146	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 494
Reads contain 494 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 663
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 735
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 663
Contig length: 435
Avg. contig coverage: 1
Consensus contains:	A: 150	C: 107	G: 66	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 435
Reads contain 435 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 664
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 734
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 664
Contig length: 430
Avg. contig coverage: 1
Consensus contains:	A: 126	C: 99	G: 83	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 430
Reads contain 430 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 665
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 733
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 665
Contig length: 640
Avg. contig coverage: 1
Consensus contains:	A: 152	C: 176	G: 123	T: 189	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 640
Reads contain 640 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 666
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 732
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 666
Contig length: 637
Avg. contig coverage: 1
Consensus contains:	A: 164	C: 151	G: 139	T: 182	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 637
Reads contain 636 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 667
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 731
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 667
Contig length: 512
Avg. contig coverage: 1
Consensus contains:	A: 134	C: 113	G: 112	T: 153	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 512
Reads contain 512 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 668
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 730
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 668
Contig length: 396
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 89	G: 77	T: 121	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 396
Reads contain 396 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 669
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 729
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 669
Contig length: 664
Avg. contig coverage: 1
Consensus contains:	A: 188	C: 119	G: 177	T: 178	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 664
Reads contain 662 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 670
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 728
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 670
Contig length: 525
Avg. contig coverage: 1
Consensus contains:	A: 150	C: 112	G: 139	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 525
Reads contain 525 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 671
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 727
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 671
Contig length: 613
Avg. contig coverage: 1
Consensus contains:	A: 178	C: 117	G: 156	T: 161	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 613
Reads contain 612 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 672
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 726
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 672
Contig length: 518
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 147	G: 109	T: 135	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 518
Reads contain 518 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 673
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 725
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 673
Contig length: 625
Avg. contig coverage: 1
Consensus contains:	A: 162	C: 145	G: 162	T: 155	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 625
Reads contain 624 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 674
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 724
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 674
Contig length: 577
Avg. contig coverage: 1
Consensus contains:	A: 169	C: 131	G: 128	T: 149	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 577
Reads contain 577 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 675
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 723
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 675
Contig length: 554
Avg. contig coverage: 1
Consensus contains:	A: 171	C: 141	G: 109	T: 133	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 554
Reads contain 554 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 676
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 722
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 676
Contig length: 611
Avg. contig coverage: 1
Consensus contains:	A: 204	C: 139	G: 95	T: 171	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 611
Reads contain 609 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 677
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 721
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 677
Contig length: 652
Avg. contig coverage: 1
Consensus contains:	A: 160	C: 140	G: 160	T: 191	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 652
Reads contain 651 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 678
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 720
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 678
Contig length: 535
Avg. contig coverage: 1
Consensus contains:	A: 144	C: 102	G: 113	T: 176	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 535
Reads contain 535 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 679
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 719
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 679
Contig length: 570
Avg. contig coverage: 1
Consensus contains:	A: 142	C: 136	G: 151	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 570
Reads contain 570 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 680
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 718
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 680
Contig length: 498
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 117	G: 125	T: 131	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 498
Reads contain 497 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 681
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 717
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 681
Contig length: 574
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 140	G: 110	T: 183	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 574
Reads contain 574 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 682
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 716
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 682
Contig length: 541
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 117	G: 165	T: 129	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 541
Reads contain 541 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 683
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 715
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 683
Contig length: 569
Avg. contig coverage: 1
Consensus contains:	A: 176	C: 131	G: 78	T: 184	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 569
Reads contain 569 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 684
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 714
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 684
Contig length: 519
Avg. contig coverage: 1
Consensus contains:	A: 191	C: 117	G: 63	T: 148	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 519
Reads contain 519 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 685
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 713
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 685
Contig length: 603
Avg. contig coverage: 1
Consensus contains:	A: 167	C: 144	G: 122	T: 170	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 603
Reads contain 603 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 686
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 712
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 686
Contig length: 588
Avg. contig coverage: 1
Consensus contains:	A: 198	C: 119	G: 105	T: 165	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 588
Reads contain 587 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 687
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 711
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 687
Contig length: 522
Avg. contig coverage: 1
Consensus contains:	A: 155	C: 102	G: 141	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 522
Reads contain 522 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 688
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 710
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 688
Contig length: 483
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 137	G: 109	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 483
Reads contain 483 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 689
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 709
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 689
Contig length: 585
Avg. contig coverage: 1
Consensus contains:	A: 157	C: 104	G: 149	T: 174	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 585
Reads contain 584 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 690
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 708
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 690
Contig length: 596
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 146	G: 140	T: 173	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 596
Reads contain 596 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 691
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 707
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 691
Contig length: 551
Avg. contig coverage: 1
Consensus contains:	A: 194	C: 102	G: 127	T: 127	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 551
Reads contain 550 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 692
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 706
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 692
Contig length: 388
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 86	G: 83	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 388
Reads contain 388 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 693
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 705
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 693
Contig length: 387
Avg. contig coverage: 1
Consensus contains:	A: 149	C: 94	G: 58	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 387
Reads contain 387 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 694
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 704
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 694
Contig length: 451
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 115	G: 83	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 451
Reads contain 451 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 695
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 703
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 695
Contig length: 457
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 107	G: 107	T: 136	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 457
Reads contain 457 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 696
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 702
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 696
Contig length: 346
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 83	G: 42	T: 94	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 346
Reads contain 346 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 697
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 701
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 697
Contig length: 507
Avg. contig coverage: 1
Consensus contains:	A: 172	C: 111	G: 83	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 507
Reads contain 507 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 698
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 700
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 698
Contig length: 397
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 133	G: 56	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 397
Reads contain 397 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 699
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 699
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 699
Contig length: 563
Avg. contig coverage: 1
Consensus contains:	A: 166	C: 116	G: 166	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 563
Reads contain 563 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 700
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 698
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 700
Contig length: 511
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 130	G: 109	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 511
Reads contain 511 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 701
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 697
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 701
Contig length: 344
Avg. contig coverage: 1
Consensus contains:	A: 84	C: 80	G: 78	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 344
Reads contain 344 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 702
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 696
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 702
Contig length: 486
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 111	G: 108	T: 138	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 486
Reads contain 485 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 703
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 695
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 703
Contig length: 312
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 61	G: 74	T: 95	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 312
Reads contain 312 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 704
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 694
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 704
Contig length: 402
Avg. contig coverage: 1
Consensus contains:	A: 71	C: 78	G: 89	T: 164	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 402
Reads contain 402 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 705
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 693
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 705
Contig length: 320
Avg. contig coverage: 1
Consensus contains:	A: 115	C: 73	G: 55	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 320
Reads contain 320 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 706
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 692
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 706
Contig length: 298
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 64	G: 47	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 298
Reads contain 298 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 707
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 691
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 707
Contig length: 558
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 115	G: 139	T: 147	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 558
Reads contain 557 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 708
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 690
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 708
Contig length: 536
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 116	G: 142	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 536
Reads contain 536 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 709
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 689
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 709
Contig length: 522
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 141	G: 109	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 522
Reads contain 522 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 710
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 688
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 710
Contig length: 458
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 98	G: 99	T: 129	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 458
Reads contain 457 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 711
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 687
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 711
Contig length: 517
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 124	G: 109	T: 157	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 517
Reads contain 517 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 712
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 686
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 712
Contig length: 437
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 120	G: 87	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 437
Reads contain 437 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 713
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 685
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 713
Contig length: 523
Avg. contig coverage: 1
Consensus contains:	A: 180	C: 147	G: 80	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 523
Reads contain 523 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 714
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 684
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 714
Contig length: 503
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 154	G: 95	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 503
Reads contain 503 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 715
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 683
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 715
Contig length: 534
Avg. contig coverage: 1
Consensus contains:	A: 194	C: 139	G: 71	T: 130	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 534
Reads contain 534 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 716
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 682
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 716
Contig length: 491
Avg. contig coverage: 1
Consensus contains:	A: 145	C: 116	G: 91	T: 138	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 491
Reads contain 490 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 717
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 681
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 717
Contig length: 502
Avg. contig coverage: 1
Consensus contains:	A: 169	C: 80	G: 130	T: 122	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 502
Reads contain 501 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 718
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 680
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 718
Contig length: 442
Avg. contig coverage: 1
Consensus contains:	A: 113	C: 124	G: 101	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 442
Reads contain 442 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 719
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 679
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 719
Contig length: 557
Avg. contig coverage: 1
Consensus contains:	A: 145	C: 112	G: 150	T: 150	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 557
Reads contain 557 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 720
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 678
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 720
Contig length: 605
Avg. contig coverage: 1
Consensus contains:	A: 176	C: 111	G: 158	T: 160	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 605
Reads contain 605 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 721
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 677
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 721
Contig length: 473
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 136	G: 91	T: 110	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 473
Reads contain 472 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 722
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 676
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 722
Contig length: 546
Avg. contig coverage: 1
Consensus contains:	A: 189	C: 113	G: 110	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 546
Reads contain 546 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 723
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 675
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 723
Contig length: 503
Avg. contig coverage: 1
Consensus contains:	A: 123	C: 155	G: 71	T: 154	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 503
Reads contain 503 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 724
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 674
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 724
Contig length: 504
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 144	G: 115	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 504
Reads contain 504 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 725
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 673
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 725
Contig length: 435
Avg. contig coverage: 1
Consensus contains:	A: 145	C: 92	G: 86	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 435
Reads contain 435 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 726
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 672
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 726
Contig length: 496
Avg. contig coverage: 1
Consensus contains:	A: 129	C: 122	G: 113	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 496
Reads contain 496 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 727
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 671
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 727
Contig length: 533
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 130	G: 142	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 533
Reads contain 533 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 728
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 670
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 728
Contig length: 406
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 105	G: 59	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 406
Reads contain 406 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 729
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 669
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 729
Contig length: 463
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 116	G: 90	T: 150	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 463
Reads contain 463 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 730
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 668
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 730
Contig length: 573
Avg. contig coverage: 1
Consensus contains:	A: 149	C: 158	G: 123	T: 143	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 573
Reads contain 573 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 731
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 667
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 731
Contig length: 438
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 75	G: 91	T: 169	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 438
Reads contain 438 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 732
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 666
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 732
Contig length: 438
Avg. contig coverage: 1
Consensus contains:	A: 121	C: 116	G: 83	T: 117	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 438
Reads contain 437 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 733
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 665
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 733
Contig length: 302
Avg. contig coverage: 1
Consensus contains:	A: 70	C: 79	G: 72	T: 81	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 302
Reads contain 302 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 734
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 664
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 734
Contig length: 405
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 82	G: 116	T: 105	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 405
Reads contain 405 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 735
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 663
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 735
Contig length: 594
Avg. contig coverage: 1
Consensus contains:	A: 168	C: 111	G: 165	T: 149	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 594
Reads contain 593 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 736
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 662
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 736
Contig length: 459
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 95	G: 94	T: 148	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 459
Reads contain 459 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 737
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 661
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 737
Contig length: 527
Avg. contig coverage: 1
Consensus contains:	A: 133	C: 107	G: 114	T: 173	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 527
Reads contain 527 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 738
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 660
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 738
Contig length: 569
Avg. contig coverage: 1
Consensus contains:	A: 164	C: 112	G: 155	T: 138	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 569
Reads contain 569 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 739
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 659
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 739
Contig length: 499
Avg. contig coverage: 1
Consensus contains:	A: 164	C: 120	G: 79	T: 134	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 499
Reads contain 497 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 740
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 658
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 740
Contig length: 497
Avg. contig coverage: 1
Consensus contains:	A: 142	C: 132	G: 94	T: 129	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 497
Reads contain 497 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 741
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 657
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 741
Contig length: 491
Avg. contig coverage: 1
Consensus contains:	A: 133	C: 127	G: 109	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 491
Reads contain 491 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 742
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 656
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 742
Contig length: 517
Avg. contig coverage: 1
Consensus contains:	A: 108	C: 139	G: 129	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 517
Reads contain 517 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 743
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 655
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 743
Contig length: 582
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 119	G: 152	T: 174	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 582
Reads contain 580 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 744
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 654
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 744
Contig length: 401
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 95	G: 57	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 401
Reads contain 401 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 745
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 653
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 745
Contig length: 349
Avg. contig coverage: 1
Consensus contains:	A: 77	C: 71	G: 91	T: 110	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 349
Reads contain 349 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 746
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 652
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 746
Contig length: 458
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 86	G: 106	T: 146	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 458
Reads contain 458 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 747
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 651
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 747
Contig length: 541
Avg. contig coverage: 1
Consensus contains:	A: 177	C: 128	G: 79	T: 157	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 541
Reads contain 541 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 748
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 650
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 748
Contig length: 377
Avg. contig coverage: 1
Consensus contains:	A: 80	C: 80	G: 92	T: 125	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 377
Reads contain 377 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 749
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 649
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 749
Contig length: 548
Avg. contig coverage: 1
Consensus contains:	A: 164	C: 136	G: 116	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 548
Reads contain 548 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 750
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 648
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 750
Contig length: 514
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 128	G: 89	T: 167	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 514
Reads contain 514 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 751
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 647
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 751
Contig length: 546
Avg. contig coverage: 1
Consensus contains:	A: 123	C: 132	G: 138	T: 153	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 546
Reads contain 546 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 752
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 646
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 752
Contig length: 516
Avg. contig coverage: 1
Consensus contains:	A: 178	C: 122	G: 80	T: 136	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 516
Reads contain 516 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 753
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 645
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 753
Contig length: 539
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 130	G: 112	T: 154	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 539
Reads contain 539 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 754
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 644
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 754
Contig length: 661
Avg. contig coverage: 1
Consensus contains:	A: 189	C: 124	G: 167	T: 181	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 661
Reads contain 661 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 755
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 643
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 755
Contig length: 563
Avg. contig coverage: 1
Consensus contains:	A: 115	C: 122	G: 148	T: 178	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 563
Reads contain 563 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 756
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 642
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 756
Contig length: 586
Avg. contig coverage: 1
Consensus contains:	A: 186	C: 135	G: 132	T: 133	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 586
Reads contain 586 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 757
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 641
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 757
Contig length: 469
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 73	G: 121	T: 161	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 469
Reads contain 469 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 758
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 640
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 758
Contig length: 386
Avg. contig coverage: 1
Consensus contains:	A: 108	C: 66	G: 70	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 386
Reads contain 386 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 759
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 639
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 759
Contig length: 525
Avg. contig coverage: 1
Consensus contains:	A: 142	C: 110	G: 139	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 525
Reads contain 525 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 760
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 638
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 760
Contig length: 552
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 117	G: 154	T: 148	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 552
Reads contain 551 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 761
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 637
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 761
Contig length: 355
Avg. contig coverage: 1
Consensus contains:	A: 80	C: 100	G: 74	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 355
Reads contain 355 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 762
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 636
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 762
Contig length: 325
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 68	G: 69	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 325
Reads contain 325 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 763
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 635
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 763
Contig length: 319
Avg. contig coverage: 1
Consensus contains:	A: 83	C: 54	G: 84	T: 98	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 319
Reads contain 319 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 764
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 634
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 764
Contig length: 113
Avg. contig coverage: 1
Consensus contains:	A: 30	C: 24	G: 23	T: 36	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 113
Reads contain 113 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 765
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 633
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 765
Contig length: 340
Avg. contig coverage: 1
Consensus contains:	A: 89	C: 66	G: 99	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 340
Reads contain 340 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 766
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 632
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 766
Contig length: 525
Avg. contig coverage: 1
Consensus contains:	A: 115	C: 170	G: 114	T: 126	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 525
Reads contain 525 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 767
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 631
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 767
Contig length: 578
Avg. contig coverage: 1
Consensus contains:	A: 169	C: 135	G: 101	T: 170	N: 3
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 578
Reads contain 575 bases, 3 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 768
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 630
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 768
Contig length: 351
Avg. contig coverage: 1
Consensus contains:	A: 88	C: 90	G: 71	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 351
Reads contain 351 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 769
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 629
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 769
Contig length: 453
Avg. contig coverage: 1
Consensus contains:	A: 93	C: 151	G: 93	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 453
Reads contain 453 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 770
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 628
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 770
Contig length: 348
Avg. contig coverage: 1
Consensus contains:	A: 92	C: 87	G: 65	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 348
Reads contain 348 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 771
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 627
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 771
Contig length: 438
Avg. contig coverage: 1
Consensus contains:	A: 108	C: 194	G: 31	T: 105	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 438
Reads contain 438 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 772
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 626
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 772
Contig length: 471
Avg. contig coverage: 1
Consensus contains:	A: 133	C: 114	G: 85	T: 139	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 471
Reads contain 471 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 773
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 625
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 773
Contig length: 507
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 130	G: 113	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 507
Reads contain 507 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 774
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 624
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 774
Contig length: 208
Avg. contig coverage: 1
Consensus contains:	A: 70	C: 28	G: 38	T: 72	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 208
Reads contain 208 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 775
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 623
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 775
Contig length: 292
Avg. contig coverage: 1
Consensus contains:	A: 75	C: 66	G: 73	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 292
Reads contain 292 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 776
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 622
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 776
Contig length: 538
Avg. contig coverage: 1
Consensus contains:	A: 162	C: 106	G: 135	T: 135	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 538
Reads contain 538 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 777
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 621
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 777
Contig length: 469
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 86	G: 117	T: 128	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 469
Reads contain 469 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 778
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 620
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 778
Contig length: 373
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 82	G: 84	T: 131	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 373
Reads contain 373 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 779
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 619
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 779
Contig length: 560
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 115	G: 129	T: 160	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 560
Reads contain 560 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 780
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 618
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 780
Contig length: 606
Avg. contig coverage: 1
Consensus contains:	A: 172	C: 118	G: 141	T: 175	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 606
Reads contain 606 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 781
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 617
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 781
Contig length: 599
Avg. contig coverage: 1
Consensus contains:	A: 162	C: 146	G: 137	T: 154	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 599
Reads contain 599 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 782
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 616
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 782
Contig length: 390
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 80	G: 107	T: 94	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 390
Reads contain 390 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 783
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 615
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 783
Contig length: 553
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 111	G: 169	T: 135	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 553
Reads contain 553 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 784
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 614
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 784
Contig length: 515
Avg. contig coverage: 1
Consensus contains:	A: 147	C: 106	G: 123	T: 139	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 515
Reads contain 515 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 785
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 613
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 785
Contig length: 552
Avg. contig coverage: 1
Consensus contains:	A: 123	C: 145	G: 141	T: 143	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 552
Reads contain 552 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 786
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 612
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 786
Contig length: 502
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 115	G: 131	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 502
Reads contain 502 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 787
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 611
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 787
Contig length: 561
Avg. contig coverage: 1
Consensus contains:	A: 169	C: 127	G: 138	T: 127	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 561
Reads contain 561 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 788
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 610
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 788
Contig length: 382
Avg. contig coverage: 1
Consensus contains:	A: 115	C: 83	G: 82	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 382
Reads contain 382 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 789
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 609
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 789
Contig length: 530
Avg. contig coverage: 1
Consensus contains:	A: 160	C: 125	G: 133	T: 111	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 530
Reads contain 529 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 790
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 608
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 790
Contig length: 408
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 137	G: 49	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 408
Reads contain 408 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 791
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 607
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 791
Contig length: 481
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 110	G: 124	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 481
Reads contain 481 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 792
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 606
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 792
Contig length: 433
Avg. contig coverage: 1
Consensus contains:	A: 150	C: 82	G: 64	T: 137	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 433
Reads contain 433 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 793
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 605
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 793
Contig length: 297
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 71	G: 52	T: 73	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 297
Reads contain 297 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 794
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 604
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 794
Contig length: 369
Avg. contig coverage: 1
Consensus contains:	A: 91	C: 87	G: 68	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 369
Reads contain 369 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 795
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 603
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 795
Contig length: 291
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 66	G: 54	T: 95	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 291
Reads contain 291 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 796
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 602
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 796
Contig length: 234
Avg. contig coverage: 1
Consensus contains:	A: 64	C: 41	G: 64	T: 65	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 234
Reads contain 234 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 797
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 601
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 797
Contig length: 519
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 115	G: 96	T: 167	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 519
Reads contain 519 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 798
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 600
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 798
Contig length: 641
Avg. contig coverage: 1
Consensus contains:	A: 181	C: 170	G: 127	T: 163	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 641
Reads contain 641 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 799
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 599
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 799
Contig length: 353
Avg. contig coverage: 1
Consensus contains:	A: 95	C: 59	G: 62	T: 136	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 353
Reads contain 352 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 800
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 598
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 800
Contig length: 545
Avg. contig coverage: 1
Consensus contains:	A: 150	C: 127	G: 124	T: 144	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 545
Reads contain 545 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 801
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 597
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 801
Contig length: 253
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 37	G: 60	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 253
Reads contain 253 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 802
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 596
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 802
Contig length: 607
Avg. contig coverage: 1
Consensus contains:	A: 171	C: 121	G: 153	T: 162	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 607
Reads contain 607 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 803
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 595
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 803
Contig length: 574
Avg. contig coverage: 1
Consensus contains:	A: 149	C: 136	G: 113	T: 176	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 574
Reads contain 574 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 804
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 594
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 804
Contig length: 170
Avg. contig coverage: 1
Consensus contains:	A: 54	C: 27	G: 5	T: 84	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 170
Reads contain 170 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 805
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 593
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 805
Contig length: 536
Avg. contig coverage: 1
Consensus contains:	A: 168	C: 108	G: 118	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 536
Reads contain 536 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 806
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 592
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 806
Contig length: 376
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 51	G: 71	T: 147	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 376
Reads contain 376 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 807
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 591
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 807
Contig length: 505
Avg. contig coverage: 1
Consensus contains:	A: 148	C: 131	G: 72	T: 154	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 505
Reads contain 505 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 808
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 590
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 808
Contig length: 452
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 91	G: 116	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 452
Reads contain 452 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 809
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 589
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 809
Contig length: 373
Avg. contig coverage: 1
Consensus contains:	A: 126	C: 91	G: 73	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 373
Reads contain 373 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 810
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 588
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 810
Contig length: 334
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 70	G: 51	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 334
Reads contain 334 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 811
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 587
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 811
Contig length: 489
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 112	G: 144	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 489
Reads contain 489 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 812
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 586
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 812
Contig length: 474
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 103	G: 129	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 474
Reads contain 474 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 813
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 585
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 813
Contig length: 550
Avg. contig coverage: 1
Consensus contains:	A: 158	C: 123	G: 122	T: 147	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 550
Reads contain 550 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 814
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 584
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 814
Contig length: 476
Avg. contig coverage: 1
Consensus contains:	A: 136	C: 110	G: 102	T: 128	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 476
Reads contain 476 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 815
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 583
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 815
Contig length: 283
Avg. contig coverage: 1
Consensus contains:	A: 74	C: 58	G: 76	T: 75	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 283
Reads contain 283 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 816
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 582
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 816
Contig length: 507
Avg. contig coverage: 1
Consensus contains:	A: 154	C: 120	G: 101	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 507
Reads contain 507 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 817
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 581
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 817
Contig length: 623
Avg. contig coverage: 1
Consensus contains:	A: 161	C: 164	G: 141	T: 157	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 623
Reads contain 623 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 818
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 580
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 818
Contig length: 603
Avg. contig coverage: 1
Consensus contains:	A: 172	C: 120	G: 123	T: 188	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 603
Reads contain 603 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 819
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 579
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 819
Contig length: 375
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 80	G: 45	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 375
Reads contain 375 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 820
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 578
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 820
Contig length: 364
Avg. contig coverage: 1
Consensus contains:	A: 88	C: 103	G: 68	T: 105	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 364
Reads contain 364 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 821
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 577
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 821
Contig length: 491
Avg. contig coverage: 1
Consensus contains:	A: 126	C: 114	G: 100	T: 151	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 491
Reads contain 491 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 822
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 576
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 822
Contig length: 375
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 110	G: 74	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 375
Reads contain 375 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 823
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 575
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 823
Contig length: 396
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 101	G: 94	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 396
Reads contain 396 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 824
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 574
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 824
Contig length: 249
Avg. contig coverage: 1
Consensus contains:	A: 65	C: 56	G: 57	T: 71	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 249
Reads contain 249 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 825
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 573
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 825
Contig length: 360
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 87	G: 87	T: 88	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 360
Reads contain 360 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 826
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 572
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 826
Contig length: 425
Avg. contig coverage: 1
Consensus contains:	A: 126	C: 99	G: 80	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 425
Reads contain 425 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 827
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 571
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 827
Contig length: 467
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 79	G: 152	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 467
Reads contain 467 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 828
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 570
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 828
Contig length: 253
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 42	G: 43	T: 66	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 253
Reads contain 253 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 829
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 569
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 829
Contig length: 205
Avg. contig coverage: 1
Consensus contains:	A: 56	C: 43	G: 62	T: 44	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 205
Reads contain 205 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 830
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 568
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 830
Contig length: 111
Avg. contig coverage: 1
Consensus contains:	A: 28	C: 16	G: 31	T: 36	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 111
Reads contain 111 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 831
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 567
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 831
Contig length: 407
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 66	G: 102	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 407
Reads contain 407 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 832
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 566
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 832
Contig length: 339
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 92	G: 73	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 339
Reads contain 339 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 833
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 565
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 833
Contig length: 327
Avg. contig coverage: 1
Consensus contains:	A: 67	C: 91	G: 82	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 327
Reads contain 327 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 834
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 564
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 834
Contig length: 238
Avg. contig coverage: 1
Consensus contains:	A: 62	C: 59	G: 52	T: 65	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 238
Reads contain 238 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 835
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 563
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 835
Contig length: 366
Avg. contig coverage: 1
Consensus contains:	A: 81	C: 80	G: 98	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 366
Reads contain 366 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 836
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 562
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 836
Contig length: 455
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 97	G: 105	T: 125	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 455
Reads contain 454 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 837
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 561
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 837
Contig length: 279
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 67	G: 45	T: 60	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 279
Reads contain 279 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 838
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 560
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 838
Contig length: 244
Avg. contig coverage: 1
Consensus contains:	A: 49	C: 79	G: 44	T: 72	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 244
Reads contain 244 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 839
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 559
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 839
Contig length: 289
Avg. contig coverage: 1
Consensus contains:	A: 67	C: 110	G: 54	T: 58	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 289
Reads contain 289 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 840
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 558
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 840
Contig length: 364
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 89	G: 59	T: 94	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 364
Reads contain 364 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 841
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 557
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 841
Contig length: 475
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 97	G: 90	T: 166	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 475
Reads contain 475 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 842
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 556
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 842
Contig length: 421
Avg. contig coverage: 1
Consensus contains:	A: 86	C: 123	G: 113	T: 99	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 421
Reads contain 421 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 843
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 555
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 843
Contig length: 333
Avg. contig coverage: 1
Consensus contains:	A: 96	C: 70	G: 72	T: 95	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 333
Reads contain 333 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 844
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 554
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 844
Contig length: 284
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 59	G: 45	T: 76	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 284
Reads contain 284 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 845
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 553
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 845
Contig length: 412
Avg. contig coverage: 1
Consensus contains:	A: 121	C: 102	G: 84	T: 105	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 412
Reads contain 412 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 846
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 552
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 846
Contig length: 314
Avg. contig coverage: 1
Consensus contains:	A: 80	C: 86	G: 59	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 314
Reads contain 314 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 847
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 551
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 847
Contig length: 230
Avg. contig coverage: 1
Consensus contains:	A: 64	C: 51	G: 49	T: 66	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 230
Reads contain 230 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 848
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 550
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 848
Contig length: 381
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 102	G: 80	T: 109	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 381
Reads contain 381 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 849
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 549
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 849
Contig length: 407
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 94	G: 84	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 407
Reads contain 407 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 850
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 548
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 850
Contig length: 225
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 39	G: 26	T: 53	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 225
Reads contain 225 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 851
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 547
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 851
Contig length: 349
Avg. contig coverage: 1
Consensus contains:	A: 84	C: 71	G: 90	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 349
Reads contain 349 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 852
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 546
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 852
Contig length: 218
Avg. contig coverage: 1
Consensus contains:	A: 69	C: 54	G: 25	T: 70	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 218
Reads contain 218 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 853
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 545
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 853
Contig length: 393
Avg. contig coverage: 1
Consensus contains:	A: 113	C: 112	G: 75	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 393
Reads contain 393 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 854
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 544
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 854
Contig length: 289
Avg. contig coverage: 1
Consensus contains:	A: 73	C: 53	G: 86	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 289
Reads contain 289 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 855
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 543
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 855
Contig length: 272
Avg. contig coverage: 1
Consensus contains:	A: 71	C: 58	G: 57	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 272
Reads contain 272 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 856
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 542
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 856
Contig length: 312
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 62	G: 63	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 312
Reads contain 312 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 857
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 541
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 857
Contig length: 316
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 73	G: 51	T: 88	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 316
Reads contain 316 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 858
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 540
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 858
Contig length: 133
Avg. contig coverage: 1
Consensus contains:	A: 29	C: 31	G: 31	T: 42	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 133
Reads contain 133 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 859
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 539
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 859
Contig length: 423
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 95	G: 86	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 423
Reads contain 423 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 860
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 538
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 860
Contig length: 208
Avg. contig coverage: 1
Consensus contains:	A: 62	C: 41	G: 50	T: 55	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 208
Reads contain 208 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 861
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 537
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 861
Contig length: 249
Avg. contig coverage: 1
Consensus contains:	A: 69	C: 65	G: 59	T: 56	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 249
Reads contain 249 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 862
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 536
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 862
Contig length: 379
Avg. contig coverage: 1
Consensus contains:	A: 113	C: 87	G: 115	T: 64	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 379
Reads contain 379 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 863
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 535
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 863
Contig length: 463
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 109	G: 118	T: 154	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 463
Reads contain 463 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 864
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 534
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 864
Contig length: 479
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 108	G: 119	T: 112	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 479
Reads contain 478 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 865
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 533
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 865
Contig length: 316
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 78	G: 58	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 316
Reads contain 316 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 866
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 532
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 866
Contig length: 533
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 173	G: 113	T: 141	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 533
Reads contain 533 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 867
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 531
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 867
Contig length: 412
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 99	G: 110	T: 92	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 412
Reads contain 412 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 868
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 530
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 868
Contig length: 544
Avg. contig coverage: 1
Consensus contains:	A: 144	C: 132	G: 133	T: 135	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 544
Reads contain 544 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 869
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 529
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 869
Contig length: 531
Avg. contig coverage: 1
Consensus contains:	A: 155	C: 114	G: 114	T: 148	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 531
Reads contain 531 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 870
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 528
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 870
Contig length: 474
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 123	G: 125	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 474
Reads contain 474 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 871
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 527
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 871
Contig length: 201
Avg. contig coverage: 1
Consensus contains:	A: 60	C: 47	G: 38	T: 56	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 201
Reads contain 201 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 872
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 526
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 872
Contig length: 371
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 90	G: 82	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 371
Reads contain 371 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 873
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 525
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 873
Contig length: 445
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 88	G: 130	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 445
Reads contain 445 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 874
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 524
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 874
Contig length: 534
Avg. contig coverage: 1
Consensus contains:	A: 154	C: 137	G: 126	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 534
Reads contain 534 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 875
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 523
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 875
Contig length: 545
Avg. contig coverage: 1
Consensus contains:	A: 129	C: 149	G: 122	T: 144	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 545
Reads contain 544 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 876
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 522
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 876
Contig length: 543
Avg. contig coverage: 1
Consensus contains:	A: 164	C: 148	G: 102	T: 129	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 543
Reads contain 543 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 877
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 521
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 877
Contig length: 328
Avg. contig coverage: 1
Consensus contains:	A: 73	C: 87	G: 86	T: 82	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 328
Reads contain 328 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 878
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 520
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 878
Contig length: 459
Avg. contig coverage: 1
Consensus contains:	A: 123	C: 137	G: 78	T: 121	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 459
Reads contain 459 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 879
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 519
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 879
Contig length: 359
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 103	G: 43	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 359
Reads contain 359 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 880
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 518
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 880
Contig length: 431
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 126	G: 89	T: 109	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 431
Reads contain 431 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 881
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 517
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 881
Contig length: 198
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 34	G: 27	T: 55	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 198
Reads contain 198 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 882
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 516
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 882
Contig length: 476
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 98	G: 136	T: 125	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 476
Reads contain 476 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 883
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 515
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 883
Contig length: 319
Avg. contig coverage: 1
Consensus contains:	A: 88	C: 70	G: 83	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 319
Reads contain 319 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 884
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 514
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 884
Contig length: 512
Avg. contig coverage: 1
Consensus contains:	A: 158	C: 103	G: 107	T: 144	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 512
Reads contain 512 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 885
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 513
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 885
Contig length: 475
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 101	G: 94	T: 143	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 475
Reads contain 475 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 886
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 512
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 886
Contig length: 494
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 127	G: 146	T: 84	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 494
Reads contain 494 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 887
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 511
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 887
Contig length: 379
Avg. contig coverage: 1
Consensus contains:	A: 88	C: 122	G: 85	T: 84	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 379
Reads contain 379 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 888
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 510
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 888
Contig length: 282
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 60	G: 56	T: 76	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 282
Reads contain 282 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 889
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 509
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 889
Contig length: 288
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 64	G: 29	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 288
Reads contain 288 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 890
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 508
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 890
Contig length: 437
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 109	G: 90	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 437
Reads contain 437 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 891
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 507
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 891
Contig length: 351
Avg. contig coverage: 1
Consensus contains:	A: 81	C: 95	G: 108	T: 67	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 351
Reads contain 351 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 892
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 506
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 892
Contig length: 497
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 132	G: 91	T: 139	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 497
Reads contain 497 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 893
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 505
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 893
Contig length: 332
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 75	G: 55	T: 88	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 332
Reads contain 332 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 894
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 504
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 894
Contig length: 448
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 80	G: 137	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 448
Reads contain 448 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 895
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 503
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 895
Contig length: 496
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 103	G: 137	T: 126	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 496
Reads contain 496 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 896
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 502
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 896
Contig length: 463
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 104	G: 106	T: 135	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 463
Reads contain 463 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 897
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 501
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 897
Contig length: 432
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 63	G: 127	T: 136	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 432
Reads contain 432 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 898
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 500
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 898
Contig length: 595
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 124	G: 169	T: 156	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 595
Reads contain 595 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 899
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 499
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 899
Contig length: 364
Avg. contig coverage: 1
Consensus contains:	A: 113	C: 84	G: 78	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 364
Reads contain 364 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 900
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 498
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 900
Contig length: 340
Avg. contig coverage: 1
Consensus contains:	A: 93	C: 66	G: 94	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 340
Reads contain 340 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 901
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 497
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 901
Contig length: 273
Avg. contig coverage: 1
Consensus contains:	A: 63	C: 55	G: 79	T: 76	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 273
Reads contain 273 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 902
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 496
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 902
Contig length: 548
Avg. contig coverage: 1
Consensus contains:	A: 136	C: 81	G: 118	T: 213	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 548
Reads contain 548 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 903
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 495
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 903
Contig length: 411
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 78	G: 114	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 411
Reads contain 411 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 904
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 494
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 904
Contig length: 179
Avg. contig coverage: 1
Consensus contains:	A: 42	C: 52	G: 44	T: 41	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 179
Reads contain 179 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 905
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 493
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 905
Contig length: 339
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 81	G: 72	T: 88	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 339
Reads contain 339 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 906
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 492
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 906
Contig length: 442
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 107	G: 103	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 442
Reads contain 442 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 907
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 491
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 907
Contig length: 356
Avg. contig coverage: 1
Consensus contains:	A: 86	C: 96	G: 103	T: 71	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 356
Reads contain 356 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 908
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 490
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 908
Contig length: 400
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 81	G: 96	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 400
Reads contain 400 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 909
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 489
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 909
Contig length: 125
Avg. contig coverage: 1
Consensus contains:	A: 36	C: 29	G: 23	T: 37	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 125
Reads contain 125 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 910
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 488
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 910
Contig length: 385
Avg. contig coverage: 1
Consensus contains:	A: 108	C: 75	G: 97	T: 105	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 385
Reads contain 385 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 911
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 487
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 911
Contig length: 366
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 90	G: 57	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 366
Reads contain 366 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 912
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 486
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 912
Contig length: 411
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 85	G: 107	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 411
Reads contain 411 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 913
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 485
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 913
Contig length: 353
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 88	G: 35	T: 74	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 353
Reads contain 353 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 914
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 484
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 914
Contig length: 439
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 112	G: 97	T: 125	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 439
Reads contain 439 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 915
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 483
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 915
Contig length: 475
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 117	G: 97	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 475
Reads contain 475 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 916
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 482
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 916
Contig length: 488
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 124	G: 132	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 488
Reads contain 488 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 917
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 481
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 917
Contig length: 349
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 89	G: 64	T: 65	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 349
Reads contain 349 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 918
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 480
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 918
Contig length: 431
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 105	G: 76	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 431
Reads contain 431 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 919
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 479
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 919
Contig length: 396
Avg. contig coverage: 1
Consensus contains:	A: 93	C: 79	G: 118	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 396
Reads contain 396 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 920
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 478
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 920
Contig length: 294
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 61	G: 47	T: 84	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 294
Reads contain 294 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 921
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 477
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 921
Contig length: 414
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 110	G: 66	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 414
Reads contain 414 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 922
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 476
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 922
Contig length: 451
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 84	G: 109	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 451
Reads contain 451 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 923
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 475
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 923
Contig length: 467
Avg. contig coverage: 1
Consensus contains:	A: 121	C: 100	G: 133	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 467
Reads contain 467 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 924
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 474
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 924
Contig length: 426
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 128	G: 87	T: 95	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 426
Reads contain 426 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 925
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 473
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 925
Contig length: 419
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 111	G: 89	T: 105	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 419
Reads contain 419 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 926
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 472
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 926
Contig length: 216
Avg. contig coverage: 1
Consensus contains:	A: 47	C: 72	G: 41	T: 56	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 216
Reads contain 216 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 927
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 471
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 927
Contig length: 469
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 107	G: 125	T: 125	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 469
Reads contain 469 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 928
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 470
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 928
Contig length: 431
Avg. contig coverage: 1
Consensus contains:	A: 95	C: 107	G: 120	T: 109	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 431
Reads contain 431 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 929
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 469
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 929
Contig length: 448
Avg. contig coverage: 1
Consensus contains:	A: 144	C: 98	G: 89	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 448
Reads contain 448 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 930
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 468
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 930
Contig length: 195
Avg. contig coverage: 1
Consensus contains:	A: 88	C: 37	G: 17	T: 53	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 195
Reads contain 195 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 931
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 467
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 931
Contig length: 130
Avg. contig coverage: 1
Consensus contains:	A: 30	C: 27	G: 40	T: 33	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 130
Reads contain 130 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 932
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 466
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 932
Contig length: 413
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 95	G: 94	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 413
Reads contain 413 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 933
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 465
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 933
Contig length: 421
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 112	G: 91	T: 88	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 421
Reads contain 421 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 934
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 464
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 934
Contig length: 323
Avg. contig coverage: 1
Consensus contains:	A: 71	C: 115	G: 74	T: 63	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 323
Reads contain 323 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 935
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 463
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 935
Contig length: 206
Avg. contig coverage: 1
Consensus contains:	A: 66	C: 52	G: 45	T: 43	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 206
Reads contain 206 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 936
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 462
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 936
Contig length: 400
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 85	G: 87	T: 120	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 400
Reads contain 399 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 937
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 461
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 937
Contig length: 440
Avg. contig coverage: 1
Consensus contains:	A: 152	C: 87	G: 95	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 440
Reads contain 440 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 938
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 460
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 938
Contig length: 422
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 70	G: 96	T: 128	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 422
Reads contain 422 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 939
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 459
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 939
Contig length: 492
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 82	G: 112	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 492
Reads contain 492 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 940
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 458
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 940
Contig length: 347
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 57	G: 116	T: 80	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 347
Reads contain 347 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 941
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 457
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 941
Contig length: 446
Avg. contig coverage: 1
Consensus contains:	A: 127	C: 100	G: 117	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 446
Reads contain 446 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 942
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 456
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 942
Contig length: 323
Avg. contig coverage: 1
Consensus contains:	A: 72	C: 94	G: 78	T: 79	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 323
Reads contain 323 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 943
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 455
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 943
Contig length: 205
Avg. contig coverage: 1
Consensus contains:	A: 46	C: 57	G: 55	T: 47	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 205
Reads contain 205 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 944
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 454
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 944
Contig length: 472
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 101	G: 101	T: 140	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 472
Reads contain 470 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 945
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 453
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 945
Contig length: 550
Avg. contig coverage: 1
Consensus contains:	A: 133	C: 126	G: 145	T: 145	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 550
Reads contain 549 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 946
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 452
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 946
Contig length: 548
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 155	G: 115	T: 140	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 548
Reads contain 547 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 947
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 451
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 947
Contig length: 390
Avg. contig coverage: 1
Consensus contains:	A: 93	C: 102	G: 92	T: 103	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 390
Reads contain 390 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 948
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 450
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 948
Contig length: 197
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 46	G: 17	T: 58	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 197
Reads contain 197 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 949
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 449
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 949
Contig length: 353
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 86	G: 74	T: 94	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 353
Reads contain 353 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 950
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 448
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 950
Contig length: 184
Avg. contig coverage: 1
Consensus contains:	A: 47	C: 46	G: 50	T: 41	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 184
Reads contain 184 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 951
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 447
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 951
Contig length: 133
Avg. contig coverage: 1
Consensus contains:	A: 45	C: 21	G: 31	T: 36	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 133
Reads contain 133 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 952
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 446
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 952
Contig length: 365
Avg. contig coverage: 1
Consensus contains:	A: 96	C: 81	G: 90	T: 96	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 365
Reads contain 363 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 953
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 445
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 953
Contig length: 398
Avg. contig coverage: 1
Consensus contains:	A: 92	C: 103	G: 83	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 398
Reads contain 398 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 954
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 444
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 954
Contig length: 467
Avg. contig coverage: 1
Consensus contains:	A: 134	C: 98	G: 115	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 467
Reads contain 467 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 955
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 443
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 955
Contig length: 376
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 98	G: 74	T: 121	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 376
Reads contain 375 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 956
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 442
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 956
Contig length: 343
Avg. contig coverage: 1
Consensus contains:	A: 115	C: 75	G: 57	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 343
Reads contain 343 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 957
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 441
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 957
Contig length: 99
Avg. contig coverage: 1
Consensus contains:	A: 40	C: 15	G: 19	T: 25	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 99
Reads contain 99 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 958
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 440
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 958
Contig length: 253
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 64	G: 46	T: 64	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 253
Reads contain 253 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 959
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 439
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 959
Contig length: 196
Avg. contig coverage: 1
Consensus contains:	A: 45	C: 54	G: 52	T: 45	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 196
Reads contain 196 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 960
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 438
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 960
Contig length: 387
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 79	G: 101	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 387
Reads contain 387 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 961
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 437
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 961
Contig length: 307
Avg. contig coverage: 1
Consensus contains:	A: 78	C: 80	G: 53	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 307
Reads contain 307 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 962
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 436
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 962
Contig length: 430
Avg. contig coverage: 1
Consensus contains:	A: 121	C: 85	G: 105	T: 117	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 430
Reads contain 428 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 963
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 435
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 963
Contig length: 403
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 95	G: 82	T: 114	N: 5
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 403
Reads contain 398 bases, 5 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 964
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 434
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 964
Contig length: 419
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 105	G: 101	T: 95	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 419
Reads contain 419 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 965
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 433
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 965
Contig length: 178
Avg. contig coverage: 1
Consensus contains:	A: 61	C: 39	G: 31	T: 47	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 178
Reads contain 178 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 966
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 432
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 966
Contig length: 113
Avg. contig coverage: 1
Consensus contains:	A: 23	C: 19	G: 40	T: 31	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 113
Reads contain 113 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 967
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 431
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 967
Contig length: 356
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 69	G: 101	T: 92	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 356
Reads contain 356 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 968
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 430
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 968
Contig length: 357
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 63	G: 75	T: 120	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 357
Reads contain 356 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 969
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 429
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 969
Contig length: 444
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 104	G: 87	T: 133	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 444
Reads contain 444 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 970
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 428
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 970
Contig length: 488
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 113	G: 107	T: 149	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 488
Reads contain 486 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 971
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 427
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 971
Contig length: 228
Avg. contig coverage: 1
Consensus contains:	A: 61	C: 49	G: 52	T: 66	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 228
Reads contain 228 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 972
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 426
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 972
Contig length: 444
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 102	G: 109	T: 121	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 444
Reads contain 444 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 973
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 425
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 973
Contig length: 393
Avg. contig coverage: 1
Consensus contains:	A: 80	C: 102	G: 104	T: 105	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 393
Reads contain 391 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 974
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 424
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 974
Contig length: 377
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 72	G: 85	T: 119	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 377
Reads contain 375 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 975
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 423
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 975
Contig length: 354
Avg. contig coverage: 1
Consensus contains:	A: 69	C: 67	G: 129	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 354
Reads contain 354 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 976
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 422
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 976
Contig length: 124
Avg. contig coverage: 1
Consensus contains:	A: 50	C: 22	G: 24	T: 28	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 124
Reads contain 124 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 977
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 421
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 977
Contig length: 322
Avg. contig coverage: 1
Consensus contains:	A: 75	C: 63	G: 94	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 322
Reads contain 322 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 978
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 420
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 978
Contig length: 188
Avg. contig coverage: 1
Consensus contains:	A: 49	C: 44	G: 54	T: 41	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 188
Reads contain 188 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 979
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 419
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 979
Contig length: 123
Avg. contig coverage: 1
Consensus contains:	A: 23	C: 43	G: 29	T: 28	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 123
Reads contain 123 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 980
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 418
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 980
Contig length: 399
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 90	G: 81	T: 109	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 399
Reads contain 398 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 981
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 417
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 981
Contig length: 488
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 122	G: 92	T: 163	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 488
Reads contain 487 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 982
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 416
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 982
Contig length: 506
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 144	G: 110	T: 133	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 506
Reads contain 505 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 983
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 415
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 983
Contig length: 216
Avg. contig coverage: 1
Consensus contains:	A: 53	C: 36	G: 81	T: 46	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 216
Reads contain 216 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 984
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 414
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 984
Contig length: 444
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 125	G: 77	T: 126	N: 4
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 444
Reads contain 440 bases, 4 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 985
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 413
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 985
Contig length: 241
Avg. contig coverage: 1
Consensus contains:	A: 57	C: 58	G: 64	T: 62	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 241
Reads contain 241 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 986
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 412
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 986
Contig length: 443
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 119	G: 88	T: 128	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 443
Reads contain 442 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 987
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 411
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 987
Contig length: 342
Avg. contig coverage: 1
Consensus contains:	A: 93	C: 82	G: 74	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 342
Reads contain 342 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 988
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 410
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 988
Contig length: 391
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 99	G: 99	T: 102	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 391
Reads contain 390 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 989
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 409
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 989
Contig length: 428
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 88	G: 89	T: 127	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 428
Reads contain 428 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 990
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 408
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 990
Contig length: 367
Avg. contig coverage: 1
Consensus contains:	A: 81	C: 89	G: 101	T: 95	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 367
Reads contain 366 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 991
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 407
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 991
Contig length: 443
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 109	G: 91	T: 138	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 443
Reads contain 441 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 992
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 406
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 992
Contig length: 278
Avg. contig coverage: 1
Consensus contains:	A: 115	C: 58	G: 27	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 278
Reads contain 278 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 993
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 405
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 993
Contig length: 224
Avg. contig coverage: 1
Consensus contains:	A: 57	C: 56	G: 42	T: 69	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 224
Reads contain 224 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 994
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 404
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 994
Contig length: 452
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 119	G: 106	T: 116	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 452
Reads contain 451 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 995
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 403
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 995
Contig length: 386
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 94	G: 96	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 386
Reads contain 386 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 996
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 402
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 996
Contig length: 304
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 58	G: 52	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 304
Reads contain 304 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 997
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 401
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 997
Contig length: 383
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 94	G: 96	T: 86	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 383
Reads contain 381 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 998
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 400
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 998
Contig length: 186
Avg. contig coverage: 1
Consensus contains:	A: 84	C: 40	G: 21	T: 41	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 186
Reads contain 186 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 999
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 399
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 999
Contig length: 475
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 77	G: 156	T: 138	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 475
Reads contain 474 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1000
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 398
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1000
Contig length: 128
Avg. contig coverage: 1
Consensus contains:	A: 29	C: 37	G: 32	T: 30	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 128
Reads contain 128 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1001
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 397
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1001
Contig length: 506
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 96	G: 124	T: 138	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 506
Reads contain 504 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1002
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 396
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1002
Contig length: 528
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 144	G: 78	T: 166	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 528
Reads contain 526 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1003
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 395
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1003
Contig length: 272
Avg. contig coverage: 1
Consensus contains:	A: 54	C: 72	G: 57	T: 88	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 272
Reads contain 271 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1004
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 394
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1004
Contig length: 322
Avg. contig coverage: 1
Consensus contains:	A: 73	C: 97	G: 56	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 322
Reads contain 322 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1005
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 393
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1005
Contig length: 224
Avg. contig coverage: 1
Consensus contains:	A: 55	C: 57	G: 51	T: 61	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 224
Reads contain 224 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1006
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 392
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1006
Contig length: 220
Avg. contig coverage: 1
Consensus contains:	A: 51	C: 56	G: 50	T: 63	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 220
Reads contain 220 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1007
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 391
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1007
Contig length: 412
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 102	G: 80	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 412
Reads contain 412 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1008
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 390
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1008
Contig length: 223
Avg. contig coverage: 1
Consensus contains:	A: 56	C: 43	G: 67	T: 57	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 223
Reads contain 223 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1009
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 389
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1009
Contig length: 408
Avg. contig coverage: 1
Consensus contains:	A: 167	C: 100	G: 49	T: 92	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 408
Reads contain 408 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1010
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 388
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1010
Contig length: 413
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 78	G: 110	T: 121	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 413
Reads contain 412 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1011
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 387
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1011
Contig length: 278
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 64	G: 35	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 278
Reads contain 278 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1012
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 386
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1012
Contig length: 190
Avg. contig coverage: 1
Consensus contains:	A: 55	C: 60	G: 43	T: 32	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 190
Reads contain 190 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1013
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 385
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1013
Contig length: 213
Avg. contig coverage: 1
Consensus contains:	A: 50	C: 88	G: 26	T: 49	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 213
Reads contain 213 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1014
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 384
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1014
Contig length: 445
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 113	G: 90	T: 135	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 445
Reads contain 445 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1015
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 383
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1015
Contig length: 323
Avg. contig coverage: 1
Consensus contains:	A: 93	C: 58	G: 92	T: 79	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 323
Reads contain 322 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1016
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 382
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1016
Contig length: 413
Avg. contig coverage: 1
Consensus contains:	A: 108	C: 108	G: 111	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 413
Reads contain 413 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1017
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 381
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1017
Contig length: 287
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 74	G: 68	T: 65	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 287
Reads contain 286 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1018
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 380
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1018
Contig length: 191
Avg. contig coverage: 1
Consensus contains:	A: 52	C: 46	G: 39	T: 54	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 191
Reads contain 191 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1019
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 379
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1019
Contig length: 115
Avg. contig coverage: 1
Consensus contains:	A: 33	C: 38	G: 19	T: 25	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 115
Reads contain 115 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1020
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 378
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1020
Contig length: 345
Avg. contig coverage: 1
Consensus contains:	A: 84	C: 56	G: 85	T: 119	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 345
Reads contain 344 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1021
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 377
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1021
Contig length: 461
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 116	G: 81	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 461
Reads contain 461 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1022
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 376
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1022
Contig length: 300
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 74	G: 44	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 300
Reads contain 300 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1023
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 375
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1023
Contig length: 336
Avg. contig coverage: 1
Consensus contains:	A: 71	C: 82	G: 76	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 336
Reads contain 336 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1024
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 374
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1024
Contig length: 195
Avg. contig coverage: 1
Consensus contains:	A: 56	C: 61	G: 33	T: 45	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 195
Reads contain 195 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1025
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 373
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1025
Contig length: 398
Avg. contig coverage: 1
Consensus contains:	A: 92	C: 81	G: 117	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 398
Reads contain 398 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1026
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 372
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1026
Contig length: 203
Avg. contig coverage: 1
Consensus contains:	A: 57	C: 50	G: 43	T: 53	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 203
Reads contain 203 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1027
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 371
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1027
Contig length: 258
Avg. contig coverage: 1
Consensus contains:	A: 63	C: 65	G: 55	T: 75	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 258
Reads contain 258 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1028
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 370
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1028
Contig length: 415
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 90	G: 113	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 415
Reads contain 415 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1029
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 369
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1029
Contig length: 101
Avg. contig coverage: 1
Consensus contains:	A: 24	C: 41	G: 14	T: 22	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 101
Reads contain 101 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1030
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 368
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1030
Contig length: 206
Avg. contig coverage: 1
Consensus contains:	A: 55	C: 47	G: 39	T: 65	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 206
Reads contain 206 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1031
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 367
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1031
Contig length: 415
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 82	G: 100	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 415
Reads contain 415 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1032
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 366
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1032
Contig length: 250
Avg. contig coverage: 1
Consensus contains:	A: 62	C: 65	G: 56	T: 67	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 250
Reads contain 250 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1033
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 365
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1033
Contig length: 214
Avg. contig coverage: 1
Consensus contains:	A: 50	C: 45	G: 66	T: 53	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 214
Reads contain 214 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1034
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 364
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1034
Contig length: 152
Avg. contig coverage: 1
Consensus contains:	A: 37	C: 41	G: 39	T: 35	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 152
Reads contain 152 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1035
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 363
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1035
Contig length: 257
Avg. contig coverage: 1
Consensus contains:	A: 89	C: 53	G: 43	T: 72	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 257
Reads contain 257 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1036
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 362
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1036
Contig length: 446
Avg. contig coverage: 1
Consensus contains:	A: 126	C: 75	G: 127	T: 117	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 446
Reads contain 445 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1037
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 361
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1037
Contig length: 227
Avg. contig coverage: 1
Consensus contains:	A: 53	C: 47	G: 64	T: 63	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 227
Reads contain 227 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1038
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 360
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1038
Contig length: 427
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 96	G: 77	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 427
Reads contain 427 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1039
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 359
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1039
Contig length: 531
Avg. contig coverage: 1
Consensus contains:	A: 150	C: 142	G: 123	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 531
Reads contain 531 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1040
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 358
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1040
Contig length: 396
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 93	G: 74	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 396
Reads contain 396 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1041
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 357
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1041
Contig length: 493
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 125	G: 82	T: 130	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 493
Reads contain 493 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1042
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 356
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1042
Contig length: 403
Avg. contig coverage: 1
Consensus contains:	A: 92	C: 109	G: 86	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 403
Reads contain 403 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1043
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 355
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1043
Contig length: 518
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 128	G: 115	T: 144	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 518
Reads contain 518 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1044
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 354
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1044
Contig length: 506
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 79	G: 122	T: 162	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 506
Reads contain 506 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1045
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 353
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1045
Contig length: 454
Avg. contig coverage: 1
Consensus contains:	A: 115	C: 104	G: 100	T: 134	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 454
Reads contain 453 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1046
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 352
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1046
Contig length: 328
Avg. contig coverage: 1
Consensus contains:	A: 122	C: 78	G: 45	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 328
Reads contain 328 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1047
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 351
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1047
Contig length: 390
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 69	G: 108	T: 107	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 390
Reads contain 389 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1048
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 350
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1048
Contig length: 323
Avg. contig coverage: 1
Consensus contains:	A: 61	C: 86	G: 82	T: 94	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 323
Reads contain 323 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1049
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 349
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1049
Contig length: 502
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 89	G: 135	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 502
Reads contain 502 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1050
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 348
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1050
Contig length: 404
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 88	G: 103	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 404
Reads contain 404 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1051
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 347
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1051
Contig length: 353
Avg. contig coverage: 1
Consensus contains:	A: 63	C: 79	G: 101	T: 110	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 353
Reads contain 353 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1052
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 346
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1052
Contig length: 444
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 87	G: 94	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 444
Reads contain 444 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1053
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 345
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1053
Contig length: 505
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 92	G: 120	T: 175	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 505
Reads contain 505 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1054
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 344
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1054
Contig length: 335
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 65	G: 80	T: 91	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 335
Reads contain 335 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1055
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 343
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1055
Contig length: 312
Avg. contig coverage: 1
Consensus contains:	A: 77	C: 77	G: 73	T: 85	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 312
Reads contain 312 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1056
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 342
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1056
Contig length: 370
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 110	G: 91	T: 74	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 370
Reads contain 369 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1057
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 341
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1057
Contig length: 511
Avg. contig coverage: 1
Consensus contains:	A: 154	C: 103	G: 99	T: 154	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 511
Reads contain 510 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1058
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 340
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1058
Contig length: 486
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 120	G: 120	T: 119	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 486
Reads contain 484 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1059
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 339
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1059
Contig length: 458
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 97	G: 127	T: 116	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 458
Reads contain 457 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1060
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 338
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1060
Contig length: 425
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 154	G: 89	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 425
Reads contain 425 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1061
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 337
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1061
Contig length: 363
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 80	G: 76	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 363
Reads contain 363 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1062
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 336
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1062
Contig length: 206
Avg. contig coverage: 1
Consensus contains:	A: 47	C: 55	G: 52	T: 52	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 206
Reads contain 206 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1063
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 335
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1063
Contig length: 469
Avg. contig coverage: 1
Consensus contains:	A: 93	C: 131	G: 119	T: 126	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 469
Reads contain 469 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1064
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 334
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1064
Contig length: 86
Avg. contig coverage: 1
Consensus contains:	A: 36	C: 17	G: 12	T: 21	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 86
Reads contain 86 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1065
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 333
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1065
Contig length: 388
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 100	G: 71	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 388
Reads contain 388 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1066
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 332
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1066
Contig length: 325
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 81	G: 92	T: 76	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 325
Reads contain 325 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1067
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 331
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1067
Contig length: 96
Avg. contig coverage: 1
Consensus contains:	A: 24	C: 16	G: 25	T: 31	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 96
Reads contain 96 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1068
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 330
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1068
Contig length: 486
Avg. contig coverage: 1
Consensus contains:	A: 126	C: 117	G: 114	T: 128	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 486
Reads contain 485 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1069
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 329
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1069
Contig length: 394
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 65	G: 93	T: 119	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 394
Reads contain 394 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1070
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 328
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1070
Contig length: 356
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 87	G: 69	T: 94	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 356
Reads contain 356 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1071
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 327
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1071
Contig length: 467
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 142	G: 99	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 467
Reads contain 467 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1072
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 326
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1072
Contig length: 409
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 83	G: 84	T: 126	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 409
Reads contain 409 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1073
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 325
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1073
Contig length: 481
Avg. contig coverage: 1
Consensus contains:	A: 171	C: 107	G: 72	T: 131	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 481
Reads contain 481 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1074
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 324
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1074
Contig length: 313
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 56	G: 81	T: 82	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 313
Reads contain 313 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1075
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 323
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1075
Contig length: 216
Avg. contig coverage: 1
Consensus contains:	A: 57	C: 40	G: 58	T: 61	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 216
Reads contain 216 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1076
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 322
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1076
Contig length: 349
Avg. contig coverage: 1
Consensus contains:	A: 121	C: 77	G: 51	T: 100	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 349
Reads contain 349 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1077
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 321
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1077
Contig length: 416
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 73	G: 84	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 416
Reads contain 416 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1078
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 320
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1078
Contig length: 447
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 98	G: 104	T: 110	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 447
Reads contain 447 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1079
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 319
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1079
Contig length: 485
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 96	G: 140	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 485
Reads contain 485 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1080
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 318
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1080
Contig length: 108
Avg. contig coverage: 1
Consensus contains:	A: 35	C: 2	G: 45	T: 26	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 108
Reads contain 108 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1081
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 317
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1081
Contig length: 489
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 136	G: 89	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 489
Reads contain 489 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1082
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 316
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1082
Contig length: 536
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 122	G: 122	T: 151	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 536
Reads contain 536 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1083
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 315
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1083
Contig length: 332
Avg. contig coverage: 1
Consensus contains:	A: 91	C: 80	G: 75	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 332
Reads contain 332 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1084
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 314
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1084
Contig length: 457
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 106	G: 104	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 457
Reads contain 457 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1085
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 313
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1085
Contig length: 420
Avg. contig coverage: 1
Consensus contains:	A: 95	C: 68	G: 143	T: 114	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 420
Reads contain 420 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1086
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 312
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1086
Contig length: 539
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 101	G: 142	T: 157	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 539
Reads contain 539 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1087
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 311
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1087
Contig length: 431
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 82	G: 109	T: 126	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 431
Reads contain 431 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1088
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 310
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1088
Contig length: 399
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 103	G: 75	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 399
Reads contain 399 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1089
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 309
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1089
Contig length: 541
Avg. contig coverage: 1
Consensus contains:	A: 190	C: 98	G: 137	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 541
Reads contain 541 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1090
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 308
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1090
Contig length: 343
Avg. contig coverage: 1
Consensus contains:	A: 65	C: 95	G: 93	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 343
Reads contain 343 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1091
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 307
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1091
Contig length: 461
Avg. contig coverage: 1
Consensus contains:	A: 133	C: 123	G: 90	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 461
Reads contain 461 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1092
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 306
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1092
Contig length: 437
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 100	G: 88	T: 129	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 437
Reads contain 437 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1093
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 305
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1093
Contig length: 424
Avg. contig coverage: 1
Consensus contains:	A: 121	C: 74	G: 93	T: 136	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 424
Reads contain 424 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1094
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 304
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1094
Contig length: 244
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 43	G: 47	T: 47	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 244
Reads contain 244 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1095
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 303
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1095
Contig length: 503
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 125	G: 121	T: 113	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 503
Reads contain 502 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1096
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 302
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1096
Contig length: 478
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 160	G: 92	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 478
Reads contain 478 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1097
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 301
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1097
Contig length: 521
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 89	G: 130	T: 146	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 521
Reads contain 521 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1098
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 300
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1098
Contig length: 419
Avg. contig coverage: 1
Consensus contains:	A: 87	C: 91	G: 122	T: 119	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 419
Reads contain 419 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1099
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 299
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1099
Contig length: 465
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 81	G: 151	T: 131	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 465
Reads contain 465 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1100
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 298
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1100
Contig length: 535
Avg. contig coverage: 1
Consensus contains:	A: 149	C: 116	G: 116	T: 154	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 535
Reads contain 535 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1101
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 297
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1101
Contig length: 158
Avg. contig coverage: 1
Consensus contains:	A: 32	C: 39	G: 40	T: 47	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 158
Reads contain 158 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1102
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 296
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1102
Contig length: 353
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 63	G: 88	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 353
Reads contain 353 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1103
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 295
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1103
Contig length: 400
Avg. contig coverage: 1
Consensus contains:	A: 89	C: 84	G: 98	T: 129	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 400
Reads contain 400 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1104
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 294
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1104
Contig length: 482
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 97	G: 101	T: 165	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 482
Reads contain 482 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1105
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 293
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1105
Contig length: 471
Avg. contig coverage: 1
Consensus contains:	A: 152	C: 93	G: 115	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 471
Reads contain 471 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1106
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 292
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1106
Contig length: 377
Avg. contig coverage: 1
Consensus contains:	A: 74	C: 88	G: 99	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 377
Reads contain 377 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1107
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 291
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1107
Contig length: 462
Avg. contig coverage: 1
Consensus contains:	A: 161	C: 110	G: 70	T: 121	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 462
Reads contain 462 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1108
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 290
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1108
Contig length: 427
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 53	G: 126	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 427
Reads contain 427 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1109
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 289
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1109
Contig length: 468
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 94	G: 114	T: 128	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 468
Reads contain 468 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1110
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 288
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1110
Contig length: 483
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 152	G: 95	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 483
Reads contain 483 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1111
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 287
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1111
Contig length: 529
Avg. contig coverage: 1
Consensus contains:	A: 165	C: 112	G: 148	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 529
Reads contain 529 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1112
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 286
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1112
Contig length: 372
Avg. contig coverage: 1
Consensus contains:	A: 95	C: 72	G: 92	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 372
Reads contain 372 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1113
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 285
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1113
Contig length: 341
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 52	G: 62	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 341
Reads contain 341 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1114
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 284
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1114
Contig length: 311
Avg. contig coverage: 1
Consensus contains:	A: 72	C: 88	G: 81	T: 70	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 311
Reads contain 311 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1115
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 283
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1115
Contig length: 391
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 55	G: 97	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 391
Reads contain 391 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1116
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 282
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1116
Contig length: 409
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 80	G: 106	T: 105	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 409
Reads contain 409 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1117
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 281
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1117
Contig length: 427
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 98	G: 111	T: 121	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 427
Reads contain 427 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1118
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 280
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1118
Contig length: 201
Avg. contig coverage: 1
Consensus contains:	A: 56	C: 53	G: 57	T: 35	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 201
Reads contain 201 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1119
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 279
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1119
Contig length: 427
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 107	G: 96	T: 92	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 427
Reads contain 426 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1120
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 278
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1120
Contig length: 296
Avg. contig coverage: 1
Consensus contains:	A: 74	C: 75	G: 64	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 296
Reads contain 296 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1121
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 277
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1121
Contig length: 330
Avg. contig coverage: 1
Consensus contains:	A: 83	C: 77	G: 97	T: 73	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 330
Reads contain 330 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1122
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 276
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1122
Contig length: 379
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 61	G: 77	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 379
Reads contain 379 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1123
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 275
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1123
Contig length: 195
Avg. contig coverage: 1
Consensus contains:	A: 51	C: 32	G: 72	T: 40	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 195
Reads contain 195 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1124
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 274
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1124
Contig length: 445
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 90	G: 135	T: 109	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 445
Reads contain 444 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1125
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 273
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1125
Contig length: 249
Avg. contig coverage: 1
Consensus contains:	A: 70	C: 67	G: 52	T: 59	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 249
Reads contain 248 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1126
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 272
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1126
Contig length: 380
Avg. contig coverage: 1
Consensus contains:	A: 133	C: 74	G: 82	T: 91	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 380
Reads contain 380 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1127
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 271
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1127
Contig length: 333
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 37	G: 99	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 333
Reads contain 333 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1128
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 270
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1128
Contig length: 369
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 97	G: 70	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 369
Reads contain 369 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1129
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 269
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1129
Contig length: 212
Avg. contig coverage: 1
Consensus contains:	A: 54	C: 49	G: 55	T: 54	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 212
Reads contain 212 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1130
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 268
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1130
Contig length: 385
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 80	G: 77	T: 110	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 385
Reads contain 383 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1131
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 267
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1131
Contig length: 347
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 62	G: 75	T: 131	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 347
Reads contain 347 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1132
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 266
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1132
Contig length: 356
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 81	G: 53	T: 90	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 356
Reads contain 355 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1133
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 265
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1133
Contig length: 530
Avg. contig coverage: 1
Consensus contains:	A: 164	C: 108	G: 146	T: 111	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 530
Reads contain 529 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1134
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 264
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1134
Contig length: 339
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 75	G: 65	T: 61	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 339
Reads contain 339 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1135
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 263
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1135
Contig length: 181
Avg. contig coverage: 1
Consensus contains:	A: 42	C: 28	G: 49	T: 62	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 181
Reads contain 181 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1136
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 262
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1136
Contig length: 413
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 71	G: 102	T: 121	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 413
Reads contain 412 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1137
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 261
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1137
Contig length: 334
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 66	G: 80	T: 93	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 334
Reads contain 333 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1138
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 260
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1138
Contig length: 392
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 52	G: 88	T: 146	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 392
Reads contain 392 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1139
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 259
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1139
Contig length: 359
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 92	G: 60	T: 94	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 359
Reads contain 358 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1140
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 258
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1140
Contig length: 367
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 94	G: 40	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 367
Reads contain 367 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1141
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 257
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1141
Contig length: 339
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 58	G: 80	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 339
Reads contain 339 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1142
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 256
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1142
Contig length: 326
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 64	G: 89	T: 69	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 326
Reads contain 326 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1143
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 255
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1143
Contig length: 323
Avg. contig coverage: 1
Consensus contains:	A: 96	C: 91	G: 59	T: 76	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 323
Reads contain 322 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1144
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 254
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1144
Contig length: 353
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 61	G: 80	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 353
Reads contain 353 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1145
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 253
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1145
Contig length: 339
Avg. contig coverage: 1
Consensus contains:	A: 96	C: 77	G: 83	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 339
Reads contain 339 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1146
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 252
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1146
Contig length: 277
Avg. contig coverage: 1
Consensus contains:	A: 65	C: 64	G: 68	T: 80	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 277
Reads contain 277 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1147
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 251
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1147
Contig length: 316
Avg. contig coverage: 1
Consensus contains:	A: 46	C: 69	G: 109	T: 92	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 316
Reads contain 316 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1148
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 250
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1148
Contig length: 317
Avg. contig coverage: 1
Consensus contains:	A: 69	C: 81	G: 81	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 317
Reads contain 317 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1149
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 249
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1149
Contig length: 490
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 87	G: 120	T: 144	N: 4
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 490
Reads contain 486 bases, 4 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1150
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 248
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1150
Contig length: 310
Avg. contig coverage: 1
Consensus contains:	A: 92	C: 57	G: 69	T: 92	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 310
Reads contain 310 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1151
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 247
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1151
Contig length: 420
Avg. contig coverage: 1
Consensus contains:	A: 108	C: 105	G: 98	T: 109	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 420
Reads contain 420 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1152
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 246
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1152
Contig length: 346
Avg. contig coverage: 1
Consensus contains:	A: 100	C: 97	G: 75	T: 74	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 346
Reads contain 346 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1153
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 245
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1153
Contig length: 425
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 71	G: 130	T: 117	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 425
Reads contain 424 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1154
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 244
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1154
Contig length: 421
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 74	G: 110	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 421
Reads contain 421 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1155
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 243
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1155
Contig length: 180
Avg. contig coverage: 1
Consensus contains:	A: 42	C: 36	G: 70	T: 32	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 180
Reads contain 180 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1156
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 242
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1156
Contig length: 379
Avg. contig coverage: 1
Consensus contains:	A: 108	C: 78	G: 100	T: 92	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 379
Reads contain 378 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1157
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 241
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1157
Contig length: 339
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 86	G: 78	T: 81	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 339
Reads contain 339 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1158
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 240
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1158
Contig length: 412
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 71	G: 110	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 412
Reads contain 412 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1159
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 239
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1159
Contig length: 458
Avg. contig coverage: 1
Consensus contains:	A: 135	C: 82	G: 85	T: 156	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 458
Reads contain 458 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1160
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 238
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1160
Contig length: 485
Avg. contig coverage: 1
Consensus contains:	A: 147	C: 128	G: 100	T: 109	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 485
Reads contain 484 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1161
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 237
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1161
Contig length: 409
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 73	G: 118	T: 114	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 409
Reads contain 408 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1162
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 236
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1162
Contig length: 334
Avg. contig coverage: 1
Consensus contains:	A: 85	C: 86	G: 83	T: 80	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 334
Reads contain 334 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1163
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 235
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1163
Contig length: 345
Avg. contig coverage: 1
Consensus contains:	A: 53	C: 70	G: 111	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 345
Reads contain 345 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1164
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 234
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1164
Contig length: 299
Avg. contig coverage: 1
Consensus contains:	A: 73	C: 65	G: 68	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 299
Reads contain 299 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1165
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 233
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1165
Contig length: 409
Avg. contig coverage: 1
Consensus contains:	A: 81	C: 93	G: 129	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 409
Reads contain 409 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1166
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 232
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1166
Contig length: 321
Avg. contig coverage: 1
Consensus contains:	A: 70	C: 103	G: 76	T: 72	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 321
Reads contain 321 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1167
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 231
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1167
Contig length: 498
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 89	G: 147	T: 131	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 498
Reads contain 498 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1168
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 230
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1168
Contig length: 157
Avg. contig coverage: 1
Consensus contains:	A: 31	C: 55	G: 39	T: 32	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 157
Reads contain 157 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1169
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 229
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1169
Contig length: 401
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 92	G: 121	T: 72	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 401
Reads contain 401 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1170
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 228
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1170
Contig length: 258
Avg. contig coverage: 1
Consensus contains:	A: 67	C: 53	G: 82	T: 56	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 258
Reads contain 258 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1171
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 227
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1171
Contig length: 117
Avg. contig coverage: 1
Consensus contains:	A: 42	C: 21	G: 12	T: 42	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 117
Reads contain 117 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1172
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 226
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1172
Contig length: 289
Avg. contig coverage: 1
Consensus contains:	A: 75	C: 48	G: 93	T: 73	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 289
Reads contain 289 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1173
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 225
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1173
Contig length: 374
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 74	G: 90	T: 108	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 374
Reads contain 373 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1174
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 224
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1174
Contig length: 309
Avg. contig coverage: 1
Consensus contains:	A: 74	C: 67	G: 82	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 309
Reads contain 309 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1175
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 223
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1175
Contig length: 422
Avg. contig coverage: 1
Consensus contains:	A: 108	C: 105	G: 102	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 422
Reads contain 422 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1176
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 222
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1176
Contig length: 210
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 39	G: 42	T: 50	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 210
Reads contain 210 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1177
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 221
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1177
Contig length: 345
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 82	G: 75	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 345
Reads contain 345 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1178
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 220
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1178
Contig length: 409
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 82	G: 88	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 409
Reads contain 409 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1179
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 219
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1179
Contig length: 179
Avg. contig coverage: 1
Consensus contains:	A: 47	C: 30	G: 40	T: 62	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 179
Reads contain 179 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1180
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 218
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1180
Contig length: 420
Avg. contig coverage: 1
Consensus contains:	A: 121	C: 109	G: 108	T: 82	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 420
Reads contain 420 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1181
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 217
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1181
Contig length: 270
Avg. contig coverage: 1
Consensus contains:	A: 71	C: 75	G: 72	T: 52	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 270
Reads contain 270 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1182
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 216
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1182
Contig length: 225
Avg. contig coverage: 1
Consensus contains:	A: 58	C: 47	G: 65	T: 55	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 225
Reads contain 225 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1183
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 215
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1183
Contig length: 379
Avg. contig coverage: 1
Consensus contains:	A: 141	C: 88	G: 69	T: 81	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 379
Reads contain 379 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1184
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 214
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1184
Contig length: 369
Avg. contig coverage: 1
Consensus contains:	A: 129	C: 79	G: 65	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 369
Reads contain 369 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1185
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 213
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1185
Contig length: 292
Avg. contig coverage: 1
Consensus contains:	A: 75	C: 79	G: 76	T: 62	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 292
Reads contain 292 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1186
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 212
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1186
Contig length: 466
Avg. contig coverage: 1
Consensus contains:	A: 98	C: 138	G: 110	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 466
Reads contain 466 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1187
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 211
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1187
Contig length: 515
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 160	G: 99	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 515
Reads contain 515 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1188
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 210
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1188
Contig length: 264
Avg. contig coverage: 1
Consensus contains:	A: 86	C: 33	G: 51	T: 94	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 264
Reads contain 264 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1189
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 209
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1189
Contig length: 320
Avg. contig coverage: 1
Consensus contains:	A: 69	C: 95	G: 68	T: 88	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 320
Reads contain 320 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1190
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 208
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1190
Contig length: 323
Avg. contig coverage: 1
Consensus contains:	A: 85	C: 58	G: 93	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 323
Reads contain 323 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1191
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 207
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1191
Contig length: 455
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 122	G: 88	T: 127	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 455
Reads contain 455 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1192
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 206
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1192
Contig length: 396
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 88	G: 95	T: 111	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 396
Reads contain 395 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1193
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 205
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1193
Contig length: 342
Avg. contig coverage: 1
Consensus contains:	A: 84	C: 83	G: 66	T: 109	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 342
Reads contain 342 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1194
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 204
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1194
Contig length: 379
Avg. contig coverage: 1
Consensus contains:	A: 160	C: 66	G: 64	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 379
Reads contain 379 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1195
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 203
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1195
Contig length: 479
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 112	G: 111	T: 140	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 479
Reads contain 479 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1196
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 202
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1196
Contig length: 299
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 75	G: 66	T: 82	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 299
Reads contain 299 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1197
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 201
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1197
Contig length: 326
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 70	G: 93	T: 69	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 326
Reads contain 326 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1198
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 200
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1198
Contig length: 488
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 122	G: 98	T: 125	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 488
Reads contain 488 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1199
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 199
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1199
Contig length: 211
Avg. contig coverage: 1
Consensus contains:	A: 43	C: 54	G: 69	T: 45	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 211
Reads contain 211 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1200
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 198
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1200
Contig length: 238
Avg. contig coverage: 1
Consensus contains:	A: 54	C: 53	G: 58	T: 73	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 238
Reads contain 238 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1201
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 197
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1201
Contig length: 376
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 93	G: 84	T: 95	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 376
Reads contain 376 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1202
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 196
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1202
Contig length: 196
Avg. contig coverage: 1
Consensus contains:	A: 53	C: 47	G: 49	T: 47	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 196
Reads contain 196 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1203
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 195
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1203
Contig length: 303
Avg. contig coverage: 1
Consensus contains:	A: 75	C: 71	G: 69	T: 82	N: 6
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 303
Reads contain 297 bases, 6 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1204
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 194
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1204
Contig length: 338
Avg. contig coverage: 1
Consensus contains:	A: 85	C: 95	G: 68	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 338
Reads contain 338 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1205
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 193
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1205
Contig length: 374
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 90	G: 98	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 374
Reads contain 374 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1206
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 192
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1206
Contig length: 370
Avg. contig coverage: 1
Consensus contains:	A: 61	C: 153	G: 63	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 370
Reads contain 370 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1207
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 191
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1207
Contig length: 346
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 81	G: 68	T: 98	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 346
Reads contain 346 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1208
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 190
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1208
Contig length: 408
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 99	G: 78	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 408
Reads contain 408 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1209
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 189
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1209
Contig length: 524
Avg. contig coverage: 1
Consensus contains:	A: 134	C: 126	G: 107	T: 155	N: 2
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 524
Reads contain 522 bases, 2 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1210
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 188
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1210
Contig length: 331
Avg. contig coverage: 1
Consensus contains:	A: 87	C: 64	G: 88	T: 92	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 331
Reads contain 331 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1211
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 187
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1211
Contig length: 400
Avg. contig coverage: 1
Consensus contains:	A: 89	C: 105	G: 109	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 400
Reads contain 400 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1212
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 186
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1212
Contig length: 366
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 74	G: 77	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 366
Reads contain 366 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1213
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 185
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1213
Contig length: 365
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 85	G: 69	T: 114	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 365
Reads contain 365 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1214
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 184
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1214
Contig length: 404
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 60	G: 104	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 404
Reads contain 404 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1215
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 183
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1215
Contig length: 147
Avg. contig coverage: 1
Consensus contains:	A: 31	C: 30	G: 49	T: 37	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 147
Reads contain 147 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1216
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 182
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1216
Contig length: 387
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 56	G: 88	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 387
Reads contain 387 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1217
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 181
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1217
Contig length: 335
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 50	G: 74	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 335
Reads contain 335 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1218
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 180
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1218
Contig length: 334
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 81	G: 67	T: 92	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 334
Reads contain 334 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1219
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 179
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1219
Contig length: 372
Avg. contig coverage: 1
Consensus contains:	A: 87	C: 93	G: 102	T: 89	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 372
Reads contain 371 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1220
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 178
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1220
Contig length: 370
Avg. contig coverage: 1
Consensus contains:	A: 92	C: 54	G: 124	T: 100	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 370
Reads contain 370 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1221
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 177
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1221
Contig length: 334
Avg. contig coverage: 1
Consensus contains:	A: 88	C: 87	G: 81	T: 75	N: 3
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 334
Reads contain 331 bases, 3 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1222
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 176
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1222
Contig length: 324
Avg. contig coverage: 1
Consensus contains:	A: 83	C: 88	G: 55	T: 98	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 324
Reads contain 324 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1223
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 175
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1223
Contig length: 481
Avg. contig coverage: 1
Consensus contains:	A: 156	C: 87	G: 95	T: 143	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 481
Reads contain 481 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1224
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 174
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1224
Contig length: 330
Avg. contig coverage: 1
Consensus contains:	A: 80	C: 87	G: 84	T: 79	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 330
Reads contain 330 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1225
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 173
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1225
Contig length: 355
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 95	G: 77	T: 85	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 355
Reads contain 354 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1226
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 172
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1226
Contig length: 190
Avg. contig coverage: 1
Consensus contains:	A: 74	C: 29	G: 27	T: 60	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 190
Reads contain 190 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1227
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 171
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1227
Contig length: 410
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 109	G: 84	T: 110	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 410
Reads contain 409 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1228
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 170
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1228
Contig length: 390
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 90	G: 100	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 390
Reads contain 390 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1229
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 169
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1229
Contig length: 463
Avg. contig coverage: 1
Consensus contains:	A: 102	C: 106	G: 113	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 463
Reads contain 463 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1230
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 168
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1230
Contig length: 418
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 98	G: 81	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 418
Reads contain 418 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1231
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 167
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1231
Contig length: 177
Avg. contig coverage: 1
Consensus contains:	A: 53	C: 29	G: 51	T: 44	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 177
Reads contain 177 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1232
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 166
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1232
Contig length: 407
Avg. contig coverage: 1
Consensus contains:	A: 162	C: 82	G: 56	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 407
Reads contain 407 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1233
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 165
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1233
Contig length: 272
Avg. contig coverage: 1
Consensus contains:	A: 81	C: 65	G: 57	T: 69	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 272
Reads contain 272 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1234
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 164
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1234
Contig length: 527
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 148	G: 117	T: 142	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 527
Reads contain 526 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1235
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 163
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1235
Contig length: 532
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 140	G: 123	T: 159	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 532
Reads contain 532 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1236
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 162
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1236
Contig length: 416
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 84	G: 108	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 416
Reads contain 416 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1237
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 161
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1237
Contig length: 122
Avg. contig coverage: 1
Consensus contains:	A: 19	C: 15	G: 58	T: 30	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 122
Reads contain 122 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1238
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 160
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1238
Contig length: 293
Avg. contig coverage: 1
Consensus contains:	A: 74	C: 51	G: 71	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 293
Reads contain 293 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1239
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 159
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1239
Contig length: 474
Avg. contig coverage: 1
Consensus contains:	A: 137	C: 122	G: 94	T: 121	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 474
Reads contain 474 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1240
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 158
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1240
Contig length: 404
Avg. contig coverage: 1
Consensus contains:	A: 74	C: 98	G: 90	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 404
Reads contain 404 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1241
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 157
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1241
Contig length: 394
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 94	G: 98	T: 105	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 394
Reads contain 394 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1242
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 156
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1242
Contig length: 419
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 106	G: 72	T: 125	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 419
Reads contain 419 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1243
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 155
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1243
Contig length: 453
Avg. contig coverage: 1
Consensus contains:	A: 134	C: 90	G: 107	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 453
Reads contain 453 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1244
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 154
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1244
Contig length: 440
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 109	G: 123	T: 103	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 440
Reads contain 440 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1245
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 153
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1245
Contig length: 491
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 103	G: 130	T: 147	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 491
Reads contain 491 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1246
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 152
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1246
Contig length: 500
Avg. contig coverage: 1
Consensus contains:	A: 148	C: 131	G: 87	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 500
Reads contain 500 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1247
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 151
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1247
Contig length: 418
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 118	G: 88	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 418
Reads contain 418 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1248
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 150
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1248
Contig length: 261
Avg. contig coverage: 1
Consensus contains:	A: 63	C: 65	G: 74	T: 59	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 261
Reads contain 261 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1249
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 149
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1249
Contig length: 335
Avg. contig coverage: 1
Consensus contains:	A: 97	C: 92	G: 57	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 335
Reads contain 335 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1250
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 148
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1250
Contig length: 315
Avg. contig coverage: 1
Consensus contains:	A: 73	C: 81	G: 72	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 315
Reads contain 315 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1251
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 147
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1251
Contig length: 417
Avg. contig coverage: 1
Consensus contains:	A: 123	C: 92	G: 106	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 417
Reads contain 417 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1252
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 146
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1252
Contig length: 336
Avg. contig coverage: 1
Consensus contains:	A: 83	C: 121	G: 41	T: 91	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 336
Reads contain 336 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1253
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 145
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1253
Contig length: 293
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 46	G: 53	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 293
Reads contain 293 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1254
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 144
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1254
Contig length: 176
Avg. contig coverage: 1
Consensus contains:	A: 55	C: 25	G: 33	T: 63	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 176
Reads contain 176 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1255
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 143
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1255
Contig length: 402
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 73	G: 85	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 402
Reads contain 402 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1256
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 142
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1256
Contig length: 142
Avg. contig coverage: 1
Consensus contains:	A: 28	C: 43	G: 30	T: 41	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 142
Reads contain 142 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1257
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 141
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1257
Contig length: 376
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 86	G: 84	T: 102	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 376
Reads contain 376 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1258
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 140
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1258
Contig length: 389
Avg. contig coverage: 1
Consensus contains:	A: 91	C: 163	G: 57	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 389
Reads contain 389 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1259
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 139
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1259
Contig length: 350
Avg. contig coverage: 1
Consensus contains:	A: 96	C: 75	G: 82	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 350
Reads contain 350 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1260
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 138
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1260
Contig length: 381
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 86	G: 81	T: 124	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 381
Reads contain 381 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1261
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 137
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1261
Contig length: 468
Avg. contig coverage: 1
Consensus contains:	A: 145	C: 123	G: 75	T: 125	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 468
Reads contain 468 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1262
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 136
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1262
Contig length: 359
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 82	G: 66	T: 95	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 359
Reads contain 359 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1263
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 135
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1263
Contig length: 232
Avg. contig coverage: 1
Consensus contains:	A: 70	C: 45	G: 59	T: 58	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 232
Reads contain 232 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1264
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 134
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1264
Contig length: 526
Avg. contig coverage: 1
Consensus contains:	A: 149	C: 98	G: 141	T: 138	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 526
Reads contain 526 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1265
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 133
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1265
Contig length: 176
Avg. contig coverage: 1
Consensus contains:	A: 64	C: 27	G: 37	T: 48	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 176
Reads contain 176 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1266
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 132
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1266
Contig length: 471
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 141	G: 76	T: 129	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 471
Reads contain 471 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1267
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 131
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1267
Contig length: 329
Avg. contig coverage: 1
Consensus contains:	A: 67	C: 100	G: 87	T: 75	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 329
Reads contain 329 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1268
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 130
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1268
Contig length: 355
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 49	G: 117	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 355
Reads contain 355 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1269
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 129
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1269
Contig length: 374
Avg. contig coverage: 1
Consensus contains:	A: 88	C: 88	G: 121	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 374
Reads contain 374 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1270
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 128
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1270
Contig length: 262
Avg. contig coverage: 1
Consensus contains:	A: 70	C: 36	G: 60	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 262
Reads contain 262 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1271
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 127
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1271
Contig length: 426
Avg. contig coverage: 1
Consensus contains:	A: 118	C: 106	G: 82	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 426
Reads contain 426 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1272
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 126
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1272
Contig length: 416
Avg. contig coverage: 1
Consensus contains:	A: 88	C: 143	G: 69	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 416
Reads contain 416 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1273
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 125
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1273
Contig length: 356
Avg. contig coverage: 1
Consensus contains:	A: 88	C: 83	G: 99	T: 86	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 356
Reads contain 356 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1274
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 124
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1274
Contig length: 393
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 109	G: 80	T: 85	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 393
Reads contain 393 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1275
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 123
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1275
Contig length: 440
Avg. contig coverage: 1
Consensus contains:	A: 128	C: 97	G: 105	T: 109	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 440
Reads contain 439 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1276
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 122
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1276
Contig length: 370
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 65	G: 58	T: 101	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 370
Reads contain 370 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1277
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 121
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1277
Contig length: 428
Avg. contig coverage: 1
Consensus contains:	A: 165	C: 75	G: 68	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 428
Reads contain 428 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1278
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 120
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1278
Contig length: 357
Avg. contig coverage: 1
Consensus contains:	A: 71	C: 86	G: 91	T: 108	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 357
Reads contain 356 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1279
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 119
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1279
Contig length: 475
Avg. contig coverage: 1
Consensus contains:	A: 114	C: 121	G: 100	T: 140	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 475
Reads contain 475 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1280
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 118
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1280
Contig length: 443
Avg. contig coverage: 1
Consensus contains:	A: 94	C: 117	G: 122	T: 110	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 443
Reads contain 443 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1281
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 117
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1281
Contig length: 417
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 82	G: 111	T: 114	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 417
Reads contain 417 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1282
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 116
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1282
Contig length: 138
Avg. contig coverage: 1
Consensus contains:	A: 40	C: 27	G: 31	T: 40	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 138
Reads contain 138 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1283
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 115
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1283
Contig length: 392
Avg. contig coverage: 1
Consensus contains:	A: 106	C: 117	G: 87	T: 82	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 392
Reads contain 392 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1284
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 114
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1284
Contig length: 398
Avg. contig coverage: 1
Consensus contains:	A: 100	C: 77	G: 74	T: 147	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 398
Reads contain 398 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1285
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 113
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1285
Contig length: 349
Avg. contig coverage: 1
Consensus contains:	A: 67	C: 63	G: 111	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 349
Reads contain 349 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1286
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 112
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1286
Contig length: 547
Avg. contig coverage: 1
Consensus contains:	A: 119	C: 151	G: 112	T: 165	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 547
Reads contain 547 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1287
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 111
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1287
Contig length: 242
Avg. contig coverage: 1
Consensus contains:	A: 56	C: 36	G: 81	T: 69	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 242
Reads contain 242 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1288
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 110
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1288
Contig length: 116
Avg. contig coverage: 1
Consensus contains:	A: 37	C: 27	G: 31	T: 21	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 116
Reads contain 116 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1289
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 109
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1289
Contig length: 384
Avg. contig coverage: 1
Consensus contains:	A: 48	C: 144	G: 79	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 384
Reads contain 384 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1290
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 108
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1290
Contig length: 444
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 101	G: 123	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 444
Reads contain 444 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1291
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 107
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1291
Contig length: 149
Avg. contig coverage: 1
Consensus contains:	A: 46	C: 22	G: 40	T: 41	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 149
Reads contain 149 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1292
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 106
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1292
Contig length: 319
Avg. contig coverage: 1
Consensus contains:	A: 99	C: 65	G: 86	T: 69	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 319
Reads contain 319 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1293
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 105
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1293
Contig length: 319
Avg. contig coverage: 1
Consensus contains:	A: 69	C: 79	G: 86	T: 85	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 319
Reads contain 319 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1294
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 104
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1294
Contig length: 122
Avg. contig coverage: 1
Consensus contains:	A: 60	C: 29	G: 9	T: 24	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 122
Reads contain 122 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1295
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 103
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1295
Contig length: 224
Avg. contig coverage: 1
Consensus contains:	A: 51	C: 62	G: 48	T: 63	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 224
Reads contain 224 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1296
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 102
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1296
Contig length: 219
Avg. contig coverage: 1
Consensus contains:	A: 58	C: 56	G: 64	T: 41	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 219
Reads contain 219 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1297
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 101
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1297
Contig length: 252
Avg. contig coverage: 1
Consensus contains:	A: 72	C: 68	G: 54	T: 58	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 252
Reads contain 252 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1298
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 100
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1298
Contig length: 211
Avg. contig coverage: 1
Consensus contains:	A: 46	C: 56	G: 57	T: 52	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 211
Reads contain 211 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1299
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 99
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1299
Contig length: 103
Avg. contig coverage: 1
Consensus contains:	A: 32	C: 22	G: 31	T: 18	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 103
Reads contain 103 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1300
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 98
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1300
Contig length: 113
Avg. contig coverage: 1
Consensus contains:	A: 27	C: 26	G: 31	T: 29	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 113
Reads contain 113 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1301
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 97
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1301
Contig length: 451
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 91	G: 115	T: 107	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 451
Reads contain 451 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1302
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 96
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1302
Contig length: 459
Avg. contig coverage: 1
Consensus contains:	A: 162	C: 48	G: 149	T: 100	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 459
Reads contain 459 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1303
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 95
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1303
Contig length: 271
Avg. contig coverage: 1
Consensus contains:	A: 68	C: 60	G: 51	T: 92	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 271
Reads contain 271 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1304
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 94
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1304
Contig length: 288
Avg. contig coverage: 1
Consensus contains:	A: 56	C: 65	G: 80	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 288
Reads contain 288 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1305
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 93
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1305
Contig length: 208
Avg. contig coverage: 1
Consensus contains:	A: 47	C: 61	G: 63	T: 37	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 208
Reads contain 208 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1306
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 92
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1306
Contig length: 478
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 128	G: 120	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 478
Reads contain 478 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1307
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 91
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1307
Contig length: 243
Avg. contig coverage: 1
Consensus contains:	A: 67	C: 59	G: 52	T: 65	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 243
Reads contain 243 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1308
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 90
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1308
Contig length: 529
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 138	G: 107	T: 172	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 529
Reads contain 529 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1309
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 89
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1309
Contig length: 271
Avg. contig coverage: 1
Consensus contains:	A: 73	C: 49	G: 80	T: 69	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 271
Reads contain 271 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1310
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 88
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1310
Contig length: 174
Avg. contig coverage: 1
Consensus contains:	A: 43	C: 38	G: 56	T: 37	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 174
Reads contain 174 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1311
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 87
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1311
Contig length: 87
Avg. contig coverage: 1
Consensus contains:	A: 19	C: 24	G: 18	T: 26	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 87
Reads contain 87 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1312
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 86
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1312
Contig length: 323
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 77	G: 49	T: 72	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 323
Reads contain 323 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1313
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 85
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1313
Contig length: 351
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 68	G: 94	T: 88	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 351
Reads contain 351 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1314
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 84
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1314
Contig length: 417
Avg. contig coverage: 1
Consensus contains:	A: 144	C: 93	G: 80	T: 100	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 417
Reads contain 417 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1315
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 83
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1315
Contig length: 128
Avg. contig coverage: 1
Consensus contains:	A: 40	C: 25	G: 39	T: 24	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 128
Reads contain 128 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1316
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 82
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1316
Contig length: 223
Avg. contig coverage: 1
Consensus contains:	A: 72	C: 46	G: 61	T: 44	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 223
Reads contain 223 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1317
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 81
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1317
Contig length: 357
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 64	G: 98	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 357
Reads contain 357 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1318
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 80
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1318
Contig length: 240
Avg. contig coverage: 1
Consensus contains:	A: 52	C: 54	G: 61	T: 73	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 240
Reads contain 240 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1319
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 79
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1319
Contig length: 435
Avg. contig coverage: 1
Consensus contains:	A: 132	C: 109	G: 82	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 435
Reads contain 435 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1320
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 78
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1320
Contig length: 296
Avg. contig coverage: 1
Consensus contains:	A: 68	C: 46	G: 68	T: 114	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 296
Reads contain 296 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1321
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 77
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1321
Contig length: 263
Avg. contig coverage: 1
Consensus contains:	A: 72	C: 50	G: 60	T: 81	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 263
Reads contain 263 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1322
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 76
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1322
Contig length: 338
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 72	G: 88	T: 101	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 338
Reads contain 337 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1323
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 75
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1323
Contig length: 216
Avg. contig coverage: 1
Consensus contains:	A: 50	C: 32	G: 44	T: 90	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 216
Reads contain 216 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1324
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 74
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1324
Contig length: 135
Avg. contig coverage: 1
Consensus contains:	A: 34	C: 33	G: 38	T: 30	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 135
Reads contain 135 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1325
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 73
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1325
Contig length: 155
Avg. contig coverage: 1
Consensus contains:	A: 33	C: 39	G: 28	T: 55	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 155
Reads contain 155 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1326
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 72
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1326
Contig length: 220
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 50	G: 25	T: 55	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 220
Reads contain 220 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1327
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 71
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1327
Contig length: 345
Avg. contig coverage: 1
Consensus contains:	A: 129	C: 75	G: 47	T: 94	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 345
Reads contain 345 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1328
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 70
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1328
Contig length: 235
Avg. contig coverage: 1
Consensus contains:	A: 63	C: 47	G: 58	T: 67	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 235
Reads contain 235 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1329
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 69
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1329
Contig length: 318
Avg. contig coverage: 1
Consensus contains:	A: 117	C: 61	G: 71	T: 69	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 318
Reads contain 318 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1330
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 68
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1330
Contig length: 466
Avg. contig coverage: 1
Consensus contains:	A: 151	C: 119	G: 81	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 466
Reads contain 466 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1331
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 67
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1331
Contig length: 440
Avg. contig coverage: 1
Consensus contains:	A: 112	C: 110	G: 96	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 440
Reads contain 440 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1332
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 66
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1332
Contig length: 306
Avg. contig coverage: 1
Consensus contains:	A: 66	C: 45	G: 102	T: 92	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 306
Reads contain 305 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1333
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 65
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1333
Contig length: 540
Avg. contig coverage: 1
Consensus contains:	A: 149	C: 129	G: 123	T: 139	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 540
Reads contain 540 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1334
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 64
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1334
Contig length: 185
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 27	G: 32	T: 50	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 185
Reads contain 185 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1335
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 63
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1335
Contig length: 329
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 67	G: 72	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 329
Reads contain 329 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1336
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 62
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1336
Contig length: 173
Avg. contig coverage: 1
Consensus contains:	A: 65	C: 35	G: 44	T: 29	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 173
Reads contain 173 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1337
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 61
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1337
Contig length: 463
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 78	G: 134	T: 112	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 463
Reads contain 463 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1338
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 60
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1338
Contig length: 372
Avg. contig coverage: 1
Consensus contains:	A: 129	C: 79	G: 56	T: 108	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 372
Reads contain 372 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1339
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 59
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1339
Contig length: 431
Avg. contig coverage: 1
Consensus contains:	A: 85	C: 102	G: 111	T: 133	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 431
Reads contain 431 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1340
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 58
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1340
Contig length: 423
Avg. contig coverage: 1
Consensus contains:	A: 136	C: 77	G: 76	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 423
Reads contain 423 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1341
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 57
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1341
Contig length: 543
Avg. contig coverage: 1
Consensus contains:	A: 130	C: 136	G: 104	T: 172	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 543
Reads contain 542 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1342
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 56
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1342
Contig length: 418
Avg. contig coverage: 1
Consensus contains:	A: 110	C: 141	G: 94	T: 73	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 418
Reads contain 418 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1343
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 55
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1343
Contig length: 441
Avg. contig coverage: 1
Consensus contains:	A: 95	C: 111	G: 113	T: 122	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 441
Reads contain 441 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1344
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 54
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1344
Contig length: 456
Avg. contig coverage: 1
Consensus contains:	A: 107	C: 81	G: 107	T: 161	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 456
Reads contain 456 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1345
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 53
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1345
Contig length: 355
Avg. contig coverage: 1
Consensus contains:	A: 79	C: 69	G: 96	T: 111	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 355
Reads contain 355 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1346
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 52
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1346
Contig length: 404
Avg. contig coverage: 1
Consensus contains:	A: 92	C: 60	G: 135	T: 117	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 404
Reads contain 404 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1347
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 51
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1347
Contig length: 339
Avg. contig coverage: 1
Consensus contains:	A: 87	C: 80	G: 78	T: 94	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 339
Reads contain 339 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1348
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 50
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1348
Contig length: 563
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 91	G: 175	T: 158	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 563
Reads contain 563 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1349
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 49
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1349
Contig length: 330
Avg. contig coverage: 1
Consensus contains:	A: 84	C: 94	G: 70	T: 82	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 330
Reads contain 330 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1350
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 48
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1350
Contig length: 205
Avg. contig coverage: 1
Consensus contains:	A: 71	C: 50	G: 49	T: 35	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 205
Reads contain 205 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1351
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 47
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1351
Contig length: 374
Avg. contig coverage: 1
Consensus contains:	A: 116	C: 107	G: 45	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 374
Reads contain 374 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1352
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 46
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1352
Contig length: 360
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 63	G: 93	T: 84	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 360
Reads contain 360 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1353
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 45
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1353
Contig length: 312
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 71	G: 54	T: 83	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 312
Reads contain 312 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1354
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 44
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1354
Contig length: 316
Avg. contig coverage: 1
Consensus contains:	A: 87	C: 85	G: 62	T: 82	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 316
Reads contain 316 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1355
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 43
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1355
Contig length: 332
Avg. contig coverage: 1
Consensus contains:	A: 87	C: 78	G: 78	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 332
Reads contain 332 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1356
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 42
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1356
Contig length: 327
Avg. contig coverage: 1
Consensus contains:	A: 78	C: 92	G: 78	T: 79	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 327
Reads contain 327 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1357
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 41
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1357
Contig length: 367
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 65	G: 114	T: 77	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 367
Reads contain 367 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1358
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 40
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1358
Contig length: 299
Avg. contig coverage: 1
Consensus contains:	A: 76	C: 69	G: 81	T: 73	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 299
Reads contain 299 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1359
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 39
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1359
Contig length: 440
Avg. contig coverage: 1
Consensus contains:	A: 101	C: 109	G: 96	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 440
Reads contain 440 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1360
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 38
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1360
Contig length: 375
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 111	G: 76	T: 98	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 375
Reads contain 375 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1361
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 37
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1361
Contig length: 354
Avg. contig coverage: 1
Consensus contains:	A: 120	C: 60	G: 70	T: 104	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 354
Reads contain 354 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1362
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 36
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1362
Contig length: 255
Avg. contig coverage: 1
Consensus contains:	A: 59	C: 41	G: 49	T: 106	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 255
Reads contain 255 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1363
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 35
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1363
Contig length: 456
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 121	G: 82	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 456
Reads contain 456 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1364
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 34
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1364
Contig length: 386
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 74	G: 92	T: 115	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 386
Reads contain 386 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1365
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 33
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1365
Contig length: 473
Avg. contig coverage: 1
Consensus contains:	A: 157	C: 124	G: 76	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 473
Reads contain 473 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1366
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 32
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1366
Contig length: 394
Avg. contig coverage: 1
Consensus contains:	A: 138	C: 54	G: 88	T: 114	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 394
Reads contain 394 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1367
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 31
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1367
Contig length: 468
Avg. contig coverage: 1
Consensus contains:	A: 105	C: 141	G: 88	T: 134	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 468
Reads contain 468 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1368
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 30
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1368
Contig length: 518
Avg. contig coverage: 1
Consensus contains:	A: 158	C: 101	G: 112	T: 147	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 518
Reads contain 518 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1369
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 29
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1369
Contig length: 423
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 75	G: 107	T: 132	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 423
Reads contain 423 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1370
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 28
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1370
Contig length: 453
Avg. contig coverage: 1
Consensus contains:	A: 139	C: 93	G: 126	T: 95	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 453
Reads contain 453 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1371
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 27
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1371
Contig length: 602
Avg. contig coverage: 1
Consensus contains:	A: 162	C: 153	G: 164	T: 123	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 602
Reads contain 602 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1372
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 26
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1372
Contig length: 360
Avg. contig coverage: 1
Consensus contains:	A: 111	C: 72	G: 99	T: 78	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 360
Reads contain 360 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1373
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 25
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1373
Contig length: 319
Avg. contig coverage: 1
Consensus contains:	A: 100	C: 62	G: 73	T: 84	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 319
Reads contain 319 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1374
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 24
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1374
Contig length: 551
Avg. contig coverage: 1
Consensus contains:	A: 133	C: 107	G: 175	T: 136	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 551
Reads contain 551 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1375
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 23
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1375
Contig length: 491
Avg. contig coverage: 1
Consensus contains:	A: 124	C: 137	G: 117	T: 113	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 491
Reads contain 491 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1376
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 22
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1376
Contig length: 405
Avg. contig coverage: 1
Consensus contains:	A: 123	C: 58	G: 84	T: 139	N: 1
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 405
Reads contain 404 bases, 1 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1377
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 21
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1377
Contig length: 321
Avg. contig coverage: 1
Consensus contains:	A: 66	C: 77	G: 84	T: 94	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 321
Reads contain 321 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1378
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 20
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1378
Contig length: 454
Avg. contig coverage: 1
Consensus contains:	A: 126	C: 129	G: 81	T: 118	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 454
Reads contain 454 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1379
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 19
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1379
Contig length: 316
Avg. contig coverage: 1
Consensus contains:	A: 103	C: 88	G: 43	T: 82	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 316
Reads contain 316 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1380
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 18
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1380
Contig length: 356
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 71	G: 73	T: 87	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 356
Reads contain 356 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1381
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 17
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1381
Contig length: 521
Avg. contig coverage: 1
Consensus contains:	A: 183	C: 98	G: 144	T: 96	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 521
Reads contain 521 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1382
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 16
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1382
Contig length: 262
Avg. contig coverage: 1
Consensus contains:	A: 82	C: 41	G: 54	T: 85	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 262
Reads contain 262 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1383
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 15
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1383
Contig length: 195
Avg. contig coverage: 1
Consensus contains:	A: 46	C: 43	G: 59	T: 47	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 195
Reads contain 195 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1384
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 14
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1384
Contig length: 429
Avg. contig coverage: 1
Consensus contains:	A: 165	C: 113	G: 54	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 429
Reads contain 429 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1385
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 13
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1385
Contig length: 376
Avg. contig coverage: 1
Consensus contains:	A: 104	C: 106	G: 69	T: 97	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 376
Reads contain 376 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1386
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 12
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1386
Contig length: 534
Avg. contig coverage: 1
Consensus contains:	A: 125	C: 137	G: 156	T: 116	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 534
Reads contain 534 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1387
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 11
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1387
Contig length: 574
Avg. contig coverage: 1
Consensus contains:	A: 192	C: 135	G: 118	T: 129	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 574
Reads contain 574 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1388
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 10
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1388
Contig length: 517
Avg. contig coverage: 1
Consensus contains:	A: 146	C: 119	G: 122	T: 130	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 517
Reads contain 517 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1389
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 9
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1389
Contig length: 322
Avg. contig coverage: 1
Consensus contains:	A: 93	C: 71	G: 69	T: 89	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 322
Reads contain 322 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1390
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 8
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1390
Contig length: 372
Avg. contig coverage: 1
Consensus contains:	A: 89	C: 88	G: 97	T: 98	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 372
Reads contain 372 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1391
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 7
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1391
Contig length: 557
Avg. contig coverage: 1
Consensus contains:	A: 143	C: 136	G: 119	T: 159	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 557
Reads contain 557 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1392
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 6
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1392
Contig length: 413
Avg. contig coverage: 1
Consensus contains:	A: 93	C: 111	G: 90	T: 119	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 413
Reads contain 413 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1393
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 5
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1393
Contig length: 580
Avg. contig coverage: 1
Consensus contains:	A: 151	C: 125	G: 162	T: 142	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 580
Reads contain 580 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1394
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 4
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1394
Contig length: 405
Avg. contig coverage: 1
Consensus contains:	A: 131	C: 88	G: 93	T: 93	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 405
Reads contain 405 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1395
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 3
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1395
Contig length: 477
Avg. contig coverage: 1
Consensus contains:	A: 126	C: 144	G: 87	T: 120	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 477
Reads contain 477 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1396
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 2
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1396
Contig length: 323
Avg. contig coverage: 1
Consensus contains:	A: 90	C: 72	G: 89	T: 72	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 323
Reads contain 323 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Building new contig 1397
Localtime: Thu Jul 15 12:00:00 2010
Unused reads: 1
+
RL1
That's it for this contig.


Finished building the contig.
Localtime: Thu Jul 15 12:00:00 2010

-------------- Contig statistics ----------------
Contig id: 1397
Contig length: 372
Avg. contig coverage: 1
Consensus contains:	A: 109	C: 56	G: 122	T: 85	N: 0
			IUPAC: 0	Funny: 0	*: 0

Num reads: 1
Avg. read length: 372
Reads contain 372 bases, 0 Ns and 0 gaps.
-------------------------------------------------
Localtime: Thu Jul 15 12:00:00 2010
Saving of extra temporary singlets disabled.
Marking possibly misassembled repeats ...done. Found none.
Transfering reads to readpool.
Localtime: Thu Jul 15 12:00:00 2010

Saving project statistics to file: step3_log/step3_info_contigstats_pass.1.txt
Saving read tag list to file: step3_log/step3_info_readtaglist.1.txt
Saving contig tag list to file: step3_log/step3_info_consensustaglist.1.txt
Saving project contig<->read list to file: step3_log/step3_info_contigreadlist_pass.1.txt
Localtime: Thu Jul 15 12:00:00 2010
Saving project statistics to file: step3_info/step3_info_contigstats.txt
Localtime: Thu Jul 15 12:00:00 2010
Saving read tag list to file: step3_info/step3_info_readtaglist.txt
Localtime: Thu Jul 15 12:00:00 2010
Saving contig tag list to file: step3_info/step3_info_consensustaglist.txt
Localtime: Thu Jul 15 12:00:00 2010
Saving project contig<->read list to file: step3_info/step3_info_contigreadlist.txt
Localtime: Thu Jul 15 12:00:00 2010
Saving contigs to file: step3_results/step3_out.caf
Localtime: Thu Jul 15 12:00:00 2010
Saving contigs to directory: step3_results/step3_out.gap4da
(first deleting old directory)
(now creating new directory)
(saving contigs)
Done.
Localtime: Thu Jul 15 12:00:00 2010
Saving contigs to FASTA file: step3_results/step3_out.unpadded.fasta
Saving padded contigs to FASTA file: step3_results/step3_out.padded.fasta
Saving contig qualities to FASTA quality file: step3_results/step3_out.unpadded.fasta.qual
Saving padded contig qualities to FASTA quality file: step3_results/step3_out.padded.fasta.qual
Saving padded strain contigs to FASTA file: step3_results/step3_out.padded_.fasta
(qualities have .qual appended)
Localtime: Thu Jul 15 12:00:00 2010
Saving SNP analysis to file: step3_info/step3_info_snpanalysis.txt


End of assembly process, thank you for using miraEST.

Go to the output files for this example

Command line arguments

MIRAest fragment assembly program
Version: EMBOSS:6.3.0

   Standard (Mandatory) qualifiers:
   -project            string     [mira] Default is mira. Defines the project
                                  name for this assembly. The project name
                                  automatically influences the name of input
                                  and output files / directories. E.g. in the
                                  default setting, the file names for the
                                  output of the assembly in FASTA format would
                                  be mira_out.fasta and mira_out.fasta.qual.
                                  Setting the project name to 'MyProject'
                                  would generate MyProject_out.fasta and
                                  MyProject_out.fasta.qual. (Any string)

   Additional (Optional) qualifiers: (none)
   Advanced (Unprompted) qualifiers:
   -paramsfile         infile     Loads parameters from the filename given.
                                  Allows a maximum of 10 levels of recursion,
                                  i.e. a -params option appearing within a
                                  file that loads other parameter files
   -setparam           menu       [unspecified] Sets parameters suited for
                                  loading sequences from FASTA, PHD or CAF
                                  files. The default is not to specify the
                                  type of input file. (Values: unspecified
                                  (Unspecified); fasta (Fasta); phd (PHD); caf
                                  (CAF))
   -expdir             directory  [.] Defines the directory where mira should
                                  search for experiment files (EXP).
   -scfdir             directory  [.] Defines the directory where mira should
                                  search for SCF files
   -feifile            infile     [mira_in.fofn] Defines the file of filenames
                                  where the names of the EXP files of a
                                  project are located.
   -fpifile            infile     [mira_in.fofn] Defines the file of filenames
                                  where the names of the PHD files of a
                                  project are located.
   -pifile             infile     [mira_in.phd] Defines the PHD file to load
                                  sequences of a project from.
   -faifile            infile     [mira_in.fasta] Defines the FASTA file to
                                  load sequences of a project from.
   -fqifile            infile     [mira_in.fasta.qual] Defines the fasta file
                                  to load base qualities of a project from.
                                  Although the order of reads in the quality
                                  file does not need to be the same as in the
                                  fasta or fofn projects (although it saves a
                                  bit of time if they are).
   -cifile             infile     [mira_in.caf] Defines the file to load a CAF
                                  project from. Filename must end with
                                  '.caf'.
   -sdifile            infile     [mira_straindata_in.txt] Defines the file to
                                  load straindata from. Only used in EST
                                  projects (miraEST).
   -xtiifile           infile     [mira_xmltraceinfo_in.xml] Defines the file
                                  to load a trace info file in XML format
                                  from. This can be used both when merging XML
                                  data to loaded files or when loading a
                                  project from an XML trace info file.
   -genome             menu       [normal] Quality grades of de-novo genome
                                  assembly. Draft is quick-and-dirty, suited
                                  to get a first look on approximate coverage
                                  of a running project. Should not be used for
                                  anything else. Normal is the default
                                  parameter set of mira that is able to tackle
                                  most genomes. A bit slower than the draft
                                  version, but includes such options as read
                                  extension and vector remnant clipping.
                                  Accurate is still slower than the normal
                                  mode but should be used for genomes that
                                  pose a problem to the normal mode. (Values:
                                  draft (Draft); normal (Normal); accurate
                                  (Accurate))
   -mapping            menu       [normal] Work like the -genome switches
                                  except they are to be used when performing
                                  mapping assemblies against given backbone
                                  sequences. (Values: draft (Draft); normal
                                  (Normal); accurate (Accurate))
   -clipping           menu       [medium] Three clipping grade modifiers,
                                  from light clipping when working with well
                                  preprocessed sequences to heavy clipping
                                  when the sequences that are being assembled
                                  had only sloppy or no preprocessing. Note 1
                                  - the light version is already included in
                                  the -genome and -mapping switches. Note 2 -
                                  it is recommended that you perform a
                                  thorough preprocessing (clipping sequencing
                                  vector stretches, clipping of low quality
                                  bases, tagging standard repeats etc.) before
                                  assembling sequences. The clipping routines
                                  of mira are more optimised to cope with the
                                  last remnants of wrongly preprocessed
                                  sequences than with sequences having had no
                                  pre-processing at all. (Values: light
                                  (Light); medium (Medium); heavy (Heavy))
   -highlyrepetitive   boolean    [N] A modifier switch for genome data that
                                  is deemed to be highly repetitive. The
                                  assemblies will run slower due to more
                                  iterative cycles that give mira a chance to
                                  resolve nasty repeats.
   -highqualitydata    boolean    [N] A modifier switch when the sequences
                                  that are used are of exceptional quality.
                                  mira will then bump up a few quality
                                  parameters which should lead to less false
                                  positives in the repeat and SNP detection
                                  routines.
   -estmode            boolean    [N] Switches mira to a good initial preset
                                  for assembling EST data. Note that this is
                                  not needed (and even counterproductive) when
                                  used with miraEST.
   -horrid             boolean    [N] Sets a number of parameters useful when
                                  dealing with really horrid data sets. Useful
                                  means that parameters are chosen to so that
                                  time and memory consumption do not explode
                                  beyond all hope of the program returning.
                                  Note that MIRA will return in most cases
                                  useful assemblies with this switch, but
                                  these might not be as optimised as with
                                  normal operation. The definition of 'horrid'
                                  is a bit flexible, for example, (a) a
                                  genomic projects with more than 2.000 reads
                                  that all seem to align partly to each other
                                  but have different repetitive structures or
                                  (b) EST clusters with a few thousand almost
                                  similar reads.
   -borg               boolean    [N] Sets several parameters to have mira try
                                  to assemble as many reads as possible. Will
                                  probably slow down the assembly process and
                                  use more memory. 'We are MIRA of borg. You
                                  will be assembled, resistance is futile!'
   -lj                 menu       [fofnexp] Defines whether to load and
                                  assemble EXP files from a file of filenames
                                  ('mira_in.fofn'), load and assemble FASTA
                                  sequences ('mira_in.fasta') and their
                                  qualities ('mira_in.fasta.qual'), load and
                                  assemble sequences or qualities from a phd
                                  file ('mira_in.phd') or to load a project
                                  from a CAF file ('mira_in.caf') and assemble
                                  or eventually reassemble it. N.B. fofnphd
                                  is not currently available. (Values: fofnexp
                                  (EXP files from a file of filenames); fasta
                                  (Load and assemble FASTA); caf (Load and
                                  assemble CAF); phd (Load and assemble PHD);
                                  fofnphd (PHD files from a file of
                                  filenames))
   -fo                 boolean    [N] If set to 'Y', the project will not be
                                  assembled and no assembly output files will
                                  be produced. Instead, the project files will
                                  only be loaded. This switch is useful for
                                  checking consistency of input files.
   -mxti               boolean    [N] Some file formats above (FASTA, PHD or
                                  even CAF and EXP) possibly don't contain all
                                  the info necessary or useful for each read
                                  of an assembly. Should additional
                                  information, such as like clipping positions
                                  etc., be available in a XML trace info file
                                  in NCBI format (see File formats), then set
                                  this option to 'Y' and it will be merged to
                                  the data loaded. Please note, quality
                                  clippings given here will override quality
                                  clippings loaded earlier or performed by
                                  mira. Minimum clippings will still be made
                                  by the program, though.
   -rns                menu       [sanger] Defines the centre naming scheme
                                  for read suffixes. Currently, only Sanger
                                  Institute and TIGR naming schemes are
                                  supported out of the box. How to choose?
                                  Please read the documentation available at
                                  the different centres or ask your sequence
                                  provider. In a nutshell, the Sanger scheme
                                  is
                                  'somename.[pqsfrw][12][bckdeflmnpt][a|b|c|...'
                                  (e.g. U13a08f10.p1ca), TIGR scheme is
                                  'somenameTF*|TR*|TA*' (e.g. GCPBN02TF or
                                  GCPDL68TABRPT103A58B). (Values: sanger
                                  (Sanger); tigr (TIGR))
   -eq                 menu       [SCF] Defines the source format for reading
                                  qualities from external sources. Normally
                                  takes effect only when these are not present
                                  in the format of the load_job project (EXP
                                  and FASTA can have them, CAF and PHD must
                                  have them). (Values: none (None); SCF (SCF))
   -eqo                boolean    [N] Only takes effect when 'lj' is fofnexp.
                                  Defines whether or not the qualities from
                                  the external source override the possibly
                                  loaded qualities from the load job project.
                                  This might be of use in case some
                                  post-processing software fiddles around with
                                  the quality values of the input file but
                                  one wants to have the original ones.
   -[no]droeqe         boolean    [Y] Should there be a major mismatch between
                                  the external quality source and the
                                  sequence (e.g. the base sequence read from a
                                  SCF file does not match the originally read
                                  base sequence), should the read be excluded
                                  from assembly or not. If not, it will use
                                  the qualities it had before trying to load
                                  the external qualities (either default
                                  qualities or the ones loaded from the
                                  original source).
   -[no]uti            boolean    [Y] Two reads sequenced from the same clone
                                  template form a read pair with a known
                                  minimum and maximum distance. This feature
                                  will definitively help for contigs
                                  containing lots of repeats. Set this to 'Y'
                                  if your data contains information on insert
                                  sizes. Information on insert sizes can be
                                  given via the SI tag in EXP files (for each
                                  read pair individually), or for the whole
                                  project using dismin and dismax
   -ess                integer    [1] Controls the starting step of the EST
                                  assembly and is therefore only useful in
                                  miraEST. EST assembly is a three step
                                  process, each with different settings to the
                                  assembly engine, with the result of each
                                  step being saved to disk. If results of
                                  previous steps are present in a directory,
                                  one can easily 'play around' with different
                                  setting for subsequent steps by reusing the
                                  results of the previous steps and directly
                                  starting with step two or three. (Integer
                                  from 1 to 4)
   -[no]ps             boolean    [Y] Controls whether date and time are
                                  printed out during the assembly. Suppressing
                                  it isn't useful in normal operation, only
                                  when debugging or benchmarking.
   -lsd                boolean    [N] Straindata is a key value file, one read
                                  per line. First the name of the read, then
                                  the strain name of the organism the read
                                  comes from. It is used by the program to
                                  differentiate different types of SNPs
                                  appearing in organisms and classifying them.
   -lb                 boolean    [N] A backbone is a sequence (or a previous
                                  assembly) that is used as a template for the
                                  current assembly. The current assembly
                                  process will first assemble reads to loaded
                                  backbone contigs before creating new
                                  contigs. This feature is helpful for
                                  assembling against previous (and already
                                  possibly edited) assembly iterations, or to
                                  make a comparative assembly of two very
                                  closely related organisms. Please read 'very
                                  closely related' as in 'only SNP mutations
                                  or short indels present'.
   -sbuip              integer    [3] When assembling against backbones, this
                                  parameter defines the pass iteration (see
                                  nop) from which on the backbones will be
                                  really used. In the passes preceding this
                                  number, the non-backbone reads will be
                                  assembled together as if no backbones
                                  existed. This allows mira to correctly spot
                                  repetitive stretches that differ by single
                                  bases and tag them accordingly. Rule of
                                  thumb - if backbones belong to the same
                                  strain as the reads to assemble, set to 1.
                                  If backbones are a different strain, then
                                  set sbuib to 1 lower than nop (example - nop
                                  4 and sbuip 3). (Integer 1 or more)
   -bsn                string     Defines the name of the strain that the
                                  backbone sequences have. (Any string)
   -bft                menu       [fasta] Defines the filetype of the backbone
                                  file given. Currently (2.8.1 ) only FASTA,
                                  CAF and GBF files are supported. When GBF
                                  (GenBank files, also named .gbk) files are
                                  loaded, the features within these files are
                                  automatically transformed into
                                  Staden-compatible tags and get passed
                                  through the assembly. (Values: fasta
                                  (Fasta); caf (CAF); gbf (GenBank))
   -brl                integer    [2500] Parameter for the internal sectioning
                                  size of the backbone. Extremely repetitive
                                  sequences may require reducing the default
                                  value, but the default value should work
                                  well in 99.9% of all cases. (Integer from
                                  1000 to 3000)
   -bbq                integer    [-1] Defines the default quality that the
                                  backbone sequences have if they came without
                                  quality values in their files (like in GBF
                                  format or when FASTA is used without .qual
                                  files). A value of -1 causes mira to use the
                                  same default quality for backbones as for
                                  reads. (Integer from -1 to 100)
   -[no]abnc           boolean    [Y] The standard mode of the assembler is to
                                  assemble available reads to a backbone and
                                  make new contigs with the remaining reads.
                                  If this option is set to 'N', the reads that
                                  cannot be assembled into existing contigs
                                  are put as singlets into the assembly, not
                                  forming new contigs.
   -mrl                integer    [40] Minimum length that reads must have to
                                  be considered for the assembly. Shorter
                                  sequences will be filtered out at the
                                  beginning of the process and won't be
                                  present in the final project. (Integer 20 or
                                  more)
   -nop                integer    [3] Defines how many iterations of the whole
                                  assembly process are done. Rule of thumb -
                                  for quick and dirty assembly use 1 (not
                                  recommended). For assembly using read
                                  extensions and / or automatic contig editing
                                  (-ure and -ace) use at least 2. The
                                  recommended setting is 3 or higher, as some
                                  knowledge generated by the assembler can be
                                  used only from the third iteration on. More
                                  than 3 passes might be useful for projects
                                  containing many repetitive elements. See
                                  also -rbl and -mr for parameters that affect
                                  the assembly and disentanglement of
                                  possible repeats. (Integer 1 or more)
   -[no]sep            boolean    [Y] Defines whether the skim algorithm (and
                                  with it also the recalculation of
                                  Smith-Waterman alignments) is called in
                                  between each main pass. If set to 'N',
                                  skimming is done only when needed by the
                                  workflow, either when read extensions are
                                  searched for (-ure) or when possible vector
                                  leftovers are to be clipped (-pvc). Setting
                                  this option to 'Y' is highly recommended,
                                  setting it to 'N' is only for quick and
                                  dirty assemblies.
   -rbl                integer    [2] Defines the maximum number of times a
                                  contig can be rebuilt during main assembly
                                  passes (-nop) if misassemblies, due to
                                  possible repeats, are found. (Integer 1 or
                                  more)
   -sd                 boolean    [N] Default is 'Y' for mira and 'N' for
                                  miraEST. A spoiler can be either a chimeric
                                  read or it is a read with long parts of
                                  unclipped vector sequence still included
                                  (that was too long for the -pvc vector
                                  leftover clipping routines). A spoiler
                                  typically prevents contigs being joined;
                                  MIRA will cut them back so that they present
                                  no more harm to the assembly. Recommended
                                  for assemblies of mid-to-high coverage
                                  genomic assemblies; not recommended for
                                  assemblies of ESTs as one might lose splice
                                  variants with that. A minimum number of two
                                  assembly passes (-nop) must be run for this
                                  option to take effect.
   -[no]sdlpo          boolean    [Y] Defines whether the spoiler detection
                                  algorithms are run only for the last pass or
                                  for all passes (-nop). Takes effect only if
                                  spoiler detection (-sd) is on.
   -bdq                integer    [10] Defines the default base quality of
                                  reads that have no quality read from a file.
                                  (Integer 0 or more)
   -[no]ugpf           boolean    [Y] MIRA has two different pathfinder
                                  algorithms it chooses from to find its way
                                  through the (more or less) complete set of
                                  possible sequence overlaps; a genomic and an
                                  EST pathfinder. The genomic looks a bit
                                  into the future of the assembly and tries to
                                  stay on safe grounds using a maximum of
                                  information already present in the contig
                                  that is being built. The EST version, on the
                                  contrary, will directly jump at the complex
                                  cases posed by very similar repetitive
                                  sequences and try to solve those first; it
                                  is willing to fall down to brute force when
                                  really bad cases (such as coverage with
                                  thousands of sequences) are encountered.
                                  Generally, the genomic pathfinder will also
                                  work quite well with EST sequences (but
                                  might get slowed down a lot in pathological
                                  cases), while the EST algorithm does not
                                  work so well on genomes. If in doubt,
                                  leaveas 'Y' for genome projects and set to
                                  'N' for EST projects.
   -[no]uess           boolean    [Y] Another important switch if you plan to
                                  assemble non-normalised EST libraries, where
                                  some ESTs may reach coverages of several
                                  hundreds or thousands of reads. This switch
                                  lets MIRA save a lot of computational time
                                  when aligning those extremely high coverage
                                  areas (but only there), at the expense of
                                  some accuracy.
   -esspd              integer    [500] Defines the number of potential
                                  partners a read must have for MIRA switching
                                  into emergency search stop mode for that
                                  read. (Integer 1 or more)
   -umcbt              boolean    [N] Defines whether there is an upper limit
                                  of time to be used to build one contig. Set
                                  this to 'Y' in EST assemblies where you
                                  think that extremely high coverages occur.
                                  Less useful for assembly of genomic
                                  sequences.
   -bts                integer    [10000] Depending on -umcbt above, this
                                  number defines the time in seconds alloted
                                  to building one contig. (Integer 1 or more)
   -[no]ure            boolean    [Y] Defines whether there is an upper limit
                                  of time to be used to build one contig. Set
                                  this to 'Y' in EST assemblies where you
                                  think that extremely high coverages occur.
                                  Less useful for assembly of genomic
                                  sequences.
   -rewl               integer    [30] Only takes effect when -ure is set to
                                  'Y'. The read extension routines use a
                                  sliding window approach on Smith-Waterman
                                  alignments. This parameter defines the
                                  window length. (Integer 1 or more)
   -rewme              integer    [2] Only takes effect when -ure is set to
                                  'Y'. The read extension routines use a
                                  sliding window approach on Smith-Waterman
                                  alignments. This parameter defines the
                                  number maximum number of errors
                                  (disagreements) between two alignments in
                                  the given window. (Integer 1 or more)
   -feip               integer    [0] Only takes effect when -ure is set to
                                  'Y'. The read extension routines can be
                                  called before assembly and/or after each
                                  assembly pass (see -nop). This parameter
                                  defines the first pass in which the read
                                  extension routines are called. The default
                                  of 0 tells mira to extend the reads the
                                  first time before the first assembly pass.
                                  (Integer 0 or more)
   -leip               integer    [0] Only takes effect when -ure is set to
                                  'Y'. The read extension routines can be
                                  called before assembly and/or after each
                                  assembly pass (see -nop). This parameter
                                  defines the last pass in which the read
                                  extension routines are called. The default
                                  of 0 tells mira to extend the reads the last
                                  time before the first assembly pass.
                                  (Integer 0 or more)
   -tpae               boolean    [N] This option is useful in EST assembly.
                                  Poly-AT stretches at the end of reads that
                                  were not correctly masked or clipped in
                                  pre-processing steps from external programs
                                  get tagged here. The assembler will not use
                                  these stretches for critical operations.
                                  Additionally, the tags do provide a good
                                  visual anchor when looking at the assembly
                                  with different programs.
   -pbwl               integer    [7] Only takes effect when -tpae is set to
                                  'Y'. Defines the window length within which
                                  all bases (except the maximum number of
                                  errors allowed) must be either A or T to be
                                  considered a polybase stretch. (Integer 1 or
                                  more)
   -pbwme              integer    [2] Only takes effect when -tpae is set to
                                  'Y. Defines the maximum number of errors
                                  allowed in a given window length such that a
                                  stretch is considered to be a polybase
                                  stretch. The distribution of these errors is
                                  not important. (Integer 1 or more)
   -pbwgd              integer    [9] Only takes effect when -tpae is set to
                                  'Y'. Defines the number of bases from the
                                  end of a sequence (if masked, from the end
                                  of the masked area) within which a polybase
                                  stretch is looked for without finding one.
                                  (Integer 1 or more)
   -[no]pvc            boolean    [Y] Mira will try to identify possible
                                  sequencing vector relicts present at the
                                  start of a sequence and clip them away.
                                  These relicts are usually a few bases long
                                  and were not correctly removed from the
                                  sequence in data pre-processing steps of
                                  external programs. You might want to turn
                                  off this option if you know (or think) that
                                  your data contains a lot of repeats and the
                                  option below to fine tune the clipping
                                  behaviour does not give the expected
                                  results.
   -pvcmla             integer    [18] The clipping of possible vector relicts
                                  option works quite well. Unfortunately the
                                  bounds of repeats or differences in EST
                                  splice variants sometimes show the same
                                  alignment behaviour as possible sequencing
                                  vector relicts and could therefore also be
                                  clipped. To stop the vector clipping from
                                  mistakenly clipping repetitive regions or
                                  EST splice variants, this option puts an
                                  upper bound to the number of bases a
                                  potential clip is allowed to have. If the
                                  number of bases is below or equal to this
                                  threshold then the bases are clipped. If the
                                  number of bases exceeds the threshold then
                                  the clip is NOT performed. Setting the value
                                  to 0 turns off the threshold i.e. clips are
                                  then always performed if a potential vector
                                  is found. (Integer 0 or more)
   -qc                 boolean    [N] Default is 'N', but is automatically set
                                  to 'Y' when using the setparam options
                                  'fasta' or 'phd' (can be turned off again by
                                  subsequent options afterwards). This will
                                  let mira perform its own quality clipping
                                  before sequences are entered into the
                                  assembly. The clip function performed is a
                                  sequence end window quality clip with back
                                  iteration to get a maximum number of bases
                                  as useful sequence. Note that the bases
                                  clipped away here can still be used
                                  afterwards if there is enough evidence
                                  supporting their correctness when the option
                                  -ure is turned on.
   -qcmq               integer    [20] This is the minimum quality required of
                                  bases in a window in order to be accepted.
                                  Please be cautious and don't use extreme
                                  values here, because then the clipping will
                                  be too lax or too harsh. Values below 15 and
                                  higher than 35 are disallowed. (Integer
                                  from 15 to 35)
   -qcwl               integer    [30] This is the length of a window in bases
                                  for the quality clip. (Integer 10 or more)
   -[no]mbc            boolean    [Y] This will let mira perform a 'clipping'
                                  of bases that were masked out (replaced with
                                  the character X). It is generally not a
                                  good idea to use mask bases to remove
                                  unwanted portions of a sequence; the EXP
                                  file format and the NCBI traceinfo format
                                  have excellent possibilities to circumvent
                                  this. But because a lot of pre-processing
                                  software is built around cross_match,
                                  scylla- and phrap-style base masking, the
                                  need arised for mira to be able to handle
                                  this too. mira will look at the start and
                                  end of each sequence to see whether there
                                  are masked bases that should be 'clipped'.
   -mbcgs              integer    [20] While performing the clip of masked
                                  bases, mira will look if it can merge larger
                                  chunks of masked bases that are a maximum
                                  of -mbcgs apart. (Integer 0 or more)
   -mbcmfg             integer    [40] While performing the clip of masked
                                  bases at the start of a sequence, mira will
                                  allow up to this number of unmasked bases in
                                  front of a masked stretch. (Integer 0 or
                                  more)
   -mbcmeg             integer    [60] While performing the clip of masked
                                  bases at the end of a sequence, mira will
                                  allow up to this number of unmasked bases
                                  behind a masked stretch. (Integer 0 or more)
   -[no]emlc           boolean    [Y] If on, ensures a minimum left clip on
                                  each read according to the parameters in
                                  -mlcr & -smlc
   -mlcr               integer    [25] If -emlc is 'Y', checks whether there
                                  is a left clip whose length is at least the
                                  size specified here. (Integer 0 or more)
   -smlc               integer    [30] If -emlc is 'Y' and the actual left
                                  clip is < -mlcr, then set the left clip of
                                  read to the value given here. (Integer 0 or
                                  more)
   -bph                integer    [14] Default is 14 on 32 bit systems and 16
                                  on 64 bit systems. Controls the number of
                                  consecutive bases n which are used as a word
                                  hash. The higher the value the faster the
                                  search. The lower the value the more weak
                                  matches are found. Values below 10 are not
                                  recommended. (Integer 1 or more)
   -hss                integer    [4] This is a parameter controlling the
                                  stepping increments with which hashes are
                                  generated. This allows for a more
                                  fine-grained search as matches are now found
                                  with at least n+s (see -bph) equal bases
                                  instead of the SSAHA 2n. The higher the
                                  value the faster the search. The lower the
                                  value the more weak matches are found.
                                  (Integer 1 or more)
   -pr                 integer    [50] Controls the relative percentage of
                                  exact word matches in an approximate overlap
                                  that has to be reached to accept the
                                  overlap as a possible match. Increasing this
                                  number will decrease the number of possible
                                  alignments that have to be checked by
                                  Smith-Waterman later on in the assembly, but
                                  it might also lead to the rejection of
                                  weaker overlaps (i.e. overlaps that contain
                                  a higher number of mismatches). (Integer 1
                                  or more)
   -mhpr               integer    [200] Controls the maximum number of
                                  possible hits one read can maximally
                                  transport to the Smith-Waterman alignment
                                  phase. If more potential hits are found,
                                  only the best ones are taken. This is an
                                  important option for tackling projects that
                                  contain extreme assembly conditions. For
                                  example, 5000 reads that are all very
                                  similar would generate around 40 to 50
                                  million possible alignments (forward and
                                  reverse complement). Setting this parameter
                                  to 200 reduces the number of alignments to
                                  check to around 1.5-2 million. As the
                                  assembly increases in passes (-nop),
                                  different combinations of possible hits will
                                  be checked, always the probably best ones
                                  first. So the accuracy of the assembly
                                  should only suffer when lowering this number
                                  too much. (Integer 1 or more)
   -bip                integer    [15] The banded Smith-Waterman alignment
                                  uses this percentage number to compute the
                                  bandwidth it has to use when computing the
                                  alignment matrix. E.g. expected overlap is
                                  150 bases, bip=10 -> the banded SW will
                                  compute a band of 15 bases to each side of
                                  the expected alignment diagonal, thus
                                  allowing up to 15 unbalanced inserts /
                                  deletes in the alignment. INCREASING AND
                                  DECREASING THIS NUMBER - increasing will
                                  find more non-optimal alignments but will
                                  also increase SW runtime between linear and
                                  ^2, decreasing will work the other way round
                                  (it might miss a few bad alignments but
                                  gain speed). (Integer from 1 to 100)
   -bmin               integer    [25] Minimum bandwidth in bases to each
                                  side. (Integer 1 or more)
   -bmax               integer    [50] Maximum bandwidth in bases to each
                                  side. (Integer 1 or more)
   -mo                 integer    [15] Minimum number of overlapping bases
                                  needed in an alignment of two sequences to
                                  be accepted. (Integer 1 or more)
   -ms                 integer    [15] Describes the minimum score of an
                                  overlap to be taken into account for
                                  assembly. mira uses a default scoring scheme
                                  for SW align. Each match counts 1, a match
                                  with an N counts 0, each mismatch with a
                                  non-N base -1 and each gap -2. Use a bigger
                                  score to weed out a number of chance
                                  matches, a lower score to perhaps find the
                                  single (short) alignment that might join two
                                  contigs together (at the expense of
                                  computing time and memory). (Integer 1 or
                                  more)
   -mrs                integer    [65] Describes the min percentage of
                                  matching between two reads to be considered
                                  for assembly. Increasing this number will
                                  save memory but one might lose possible
                                  alignments. A maximum of 80 is probably
                                  sensible here. Decreasing below 55 will
                                  probably make memory and time consumption
                                  explode. (Integer from 1 to 100)
   -egp                boolean    [N] Defines whether or not to increase
                                  penalties applied to alignments containing
                                  long gaps. Setting this to 'Y' might help in
                                  projects with frequent repeats. On the
                                  other hand, it is definitively disturbing
                                  when assembling very long reads containing
                                  multiple long indels in the called base
                                  sequence ... although this should not happen
                                  in the first place and is a sure sign for
                                  problems lying ahead. When in doubt, set it
                                  to 'Y' for EST projects and de-novo genome
                                  assembly, set it to 'N' for assembly of
                                  closely related strains (assembly against a
                                  backbone). When set to 'N', it is
                                  recommended to have -amgb and -amgbemc both
                                  set to 'Y'.
   -egpl               menu       [low] Has no effect if extra_gap_penalty is
                                  off. Defines an extra penalty applied to
                                  'long' gaps. There are these predefined
                                  levels - 1. low - use this if you expect
                                  your base caller frequently misses two or
                                  more bases. 2. medium - use this if your
                                  base caller is expected to frequently miss
                                  one to two bases. 3. high - use this if your
                                  base caller does not frequently miss more
                                  than one base. For some stages of the EST
                                  assembly process, a special value 'est' is
                                  used. (Values: low (Low); medium (Medium);
                                  high (High); est (EST split splices))
   -megpp              integer    [100] Has no effect if extra_gap_penalty is
                                  off. Defines the maximum extra penalty in
                                  percent applied to 'long' gaps. (Integer
                                  from 1 to 100)
   -np                 string     [mira] Contigs will have this string
                                  prepended to their names. (Any string)
   -an                 menu       [signal] When adding reads to a contig,
                                  dangerous regions can get an extra integrity
                                  check. none = no extra check. text = check
                                  is only text-based. signal = check is signal
                                  based, if the SCF trace is not available,
                                  fallback is 'text'. For the time being, only
                                  regions tagged as ALUS or REPT in the
                                  experiment file are considered dangerous.
                                  (Values: none (None); text (Text); signal
                                  (Signal))
   -rodirs             integer    [15] When adding reads to a contig, reject
                                  the reads if the drop in the quality of the
                                  consensus is > the given value in %. Lower
                                  values mean stricter checking. This value is
                                  doubled should a read be entered that has a
                                  template partner (a read pair) at the right
                                  distance. (Integer from 1 to 100)
   -dmer               integer    [1] When adding reads to a contig, reject
                                  the reads if the error in zones known as
                                  dangerous exceeds the given value in %.
                                  Lower values mean stricter checking in these
                                  danger zones. For the time being, only
                                  regions tagged as ALUS or REPT in the
                                  experiment file are considered dangerous.
                                  (Integer from 1 to 100)
   -[no]mr             boolean    [Y] One of the most important switches in
                                  MIRA. If set to 'Y', MIRA will try to
                                  resolve misassemblies due to repeats by
                                  identifying single base stretch differences
                                  and tag those critical bases as RMB (Repeat
                                  Marker Base, weak or strong). This switch is
                                  also needed when MIRA is run in EST mode to
                                  identify possible inter-, intra- and
                                  intra-and-interorganism SNPs.
   -asir               boolean    [N] Only takes effect when -mr is set to
                                  'Y', effect is also dependent on the fact
                                  whether strain data (see -lsd) is present or
                                  not. Usually, mira will mark bases that
                                  differentiate between repeats, when a
                                  conflict occurs between reads that belong to
                                  one strain. If the conflict occurs between
                                  reads belonging to different strains they
                                  are marked as SNP. However, if this switch
                                  is set to 'Y',= then conflicts within a
                                  strain are also marked as SNP. This switch
                                  is mainly used in assemblies of ESTs; it
                                  should not be set for genomic assembly.
   -mrpg               integer    [2] Only takes effect when -mr is set to
                                  'Y'. This defines the minimum number of
                                  reads in a group that are needed for the RMB
                                  (Repeat Marker Bases) or SNP detection
                                  routines to be triggered. A group is defined
                                  by the reads carrying the same nucleotide
                                  for a given position, i.e., an assembly with
                                  mrpg=2 will need at least two times two
                                  reads with the same nucleotide (having at
                                  least a quality as defined in -mgqrt) to be
                                  recognised as repeat marker or a SNP.
                                  Setting this to a low number increases
                                  sensitivity, but might produce a few false
                                  positives, resulting in reads being thrown
                                  out of contigs because of falsely identified
                                  possible repeat markers (or wrongly
                                  recognised as SNP). (Integer 2 or more)
   -mgqrt              integer    [30] Only takes effect when -mr is set to
                                  'Y'. This defines the minimum quality of a
                                  group of bases to be taken into account as
                                  potential repeat marker. The lower the
                                  number, the more sensitive you get, but
                                  lowering below 25 is not recommended as a
                                  lot of wrongly called bases can have a
                                  quality approaching this value and you'd end
                                  up with a lot of false positives. The
                                  higher the overall coverage of your project
                                  the better, and the higher you can set this
                                  number. A value of 35 will probably remove
                                  all false positives, a value of 40 will
                                  probably never show false positives.
                                  (Integer 25 or more)
   -emea               integer    [15] Only takes effect when -mr is set to
                                  'Y'. Using the end of sequences of Sanger
                                  type shotgun sequencing is always a bit
                                  risky, as wrongly called bases tend to crowd
                                  there or some sequencing vector relicts
                                  hang around. It is even more risky to use
                                  these stretches for detecting possible
                                  repeats, so one can define an exclusion area
                                  where the bases are not used when
                                  determining whether a mismatch is due to
                                  repeats or not. (Integer 0 or more)
   -[no]amgb           boolean    [Y] Determines whether columns containing
                                  gap bases (indels) are also tagged.
   -[no]amgbemc        boolean    [Y] Only takes effect when -amgb is set to
                                  'Y'. Determines whether multiple columns
                                  containing gap bases (indels) are also
                                  tagged.
   -[no]amgbnbs        boolean    [Y] Only takes effect when -amgb is set to
                                  'Y'. Determines whether, for both tagging
                                  columns containing gap bases, both strands
                                  need to have a gap. Setting this to 'N' is
                                  not recommended except when working in
                                  desperately low coverage situations.
   -dismin             integer    [500] The minimum distance that read pairs
                                  may be apart. There is an additional error
                                  margin of 10% subtracted from this value
                                  during internal computations. (Integer 0 or
                                  more)
   -dismax             integer    [5000] The maximum distance that read pairs
                                  may be apart. There is an additional error
                                  margin of 10% added to this value during
                                  internal computations. (Integer 0 or more)
   -ace                boolean    [N] Once contigs have been build, mira can
                                  call a built-in version of the automatic
                                  contig editor EdIt. EdIt will try to resolve
                                  discrepancies in the contig by performing
                                  trace analysis and correct even hard to
                                  resolve errors. This option is always
                                  useful, but especially in conjunction with
                                  -nop and -ure. Notice: the current
                                  development version has a memory leak in the
                                  editor, therefore the option is not
                                  automatically turned on.
   -[no]sem            boolean    [Y] If set to 'Y' the automatic editor will
                                  not take error hypotheses with a low
                                  probability into account, even if all the
                                  requirements to make an edit are fulfilled.
   -ct                 integer    [50] The higher this value, the more strict
                                  the automatic editor will apply its internal
                                  rule set. Going below 40 is not
                                  recommended. (Integer from 1 to 100)
   -[no]orc            boolean    [Y] Output CAF results
   -[no]org            boolean    [Y] Output GAP4 results
   -[no]orf            boolean    [Y] Output FASTA results
   -ora                boolean    [N] Output ACE results
   -[no]ort            boolean    [Y] Output TXT results
   -[no]ors            boolean    [Y] Output TCS results
   -orh                boolean    [N] Output HTML results
   -otc                boolean    [N] Output temporary CAF results
   -otg                boolean    [N] Output temporary GAP4 results
   -otf                boolean    [N] Output temporary FASTA results
   -ota                boolean    [N] Output temporary ACE results
   -ott                boolean    [N] Output temporary TXT results
   -ots                boolean    [N] Output temporary TCS results
   -oth                boolean    [N] Output temporary HTML results
   -oetc               boolean    [N] Output extra temporary CAF results
   -oetg               boolean    [N] Output extra temporary GAP4 results
   -oetf               boolean    [N] Output extra temporary FASTA results
   -oeta               boolean    [N] Output extra temporary ACE results
   -oett               boolean    [N] Output extra temporary TXT results
   -oeth               boolean    [N] Output extra temporary HTML results
   -tcpl               integer    [60] When producing an output in text format
                                  (-ort|ott|oett), this parameter defines how
                                  many bases each line of an alignment should
                                  contain. (Integer 1 or more)
   -hcpl               integer    [60] When producing an output in text format
                                  (-orh|oth|oeth), this parameter defines how
                                  many bases each line of an alignment should
                                  contain. (Integer 1 or more)
   -gapfda             string     [gap4da] Defines the extension of the
                                  directory where mira will write the result
                                  of an assembly ready to import into the
                                  Staden package (GAP4) in Direct Assembly
                                  format. The name of the directory will then
                                  be _. (Any string)
   -log                string     [miralog] Defines the directory where mira
                                  will write some log files to. Note that the
                                  name of the actual project will be
                                  prepended. (Any string)
   -co                 string     [mira_out.caf] Defines the file in CAF
                                  format to save an assembled project to.
                                  Filename must end with '.caf'. (Any string)

   Associated qualifiers:

   "-expdir" associated qualifiers
   -extension          string     Default file extension

   "-scfdir" associated qualifiers
   -extension          string     Default file extension

   General qualifiers:
   -auto               boolean    Turn off prompts
   -stdout             boolean    Write first file to standard output
   -filter             boolean    Read first file from standard input, write
                                  first file to standard output
   -options            boolean    Prompt for standard and additional values
   -debug              boolean    Write debug output to program.dbg
   -verbose            boolean    Report some/full command line options
   -help               boolean    Report command line options and exit. More
                                  information on associated and general
                                  qualifiers can be found with -help -verbose
   -warning            boolean    Report warnings
   -error              boolean    Report errors
   -fatal              boolean    Report fatal errors
   -die                boolean    Report dying program messages
   -version            boolean    Report version number and exit

Qualifier

Type

Description

Allowed values

Default

Standard (Mandatory) qualifiers

-project

string

Default is mira. Defines the project name for this assembly. The project name automatically influences the name of input and output files / directories. E.g. in the default setting, the file names for the output of the assembly in FASTA format would be mira_out.fasta and mira_out.fasta.qual. Setting the project name to 'MyProject' would generate MyProject_out.fasta and MyProject_out.fasta.qual.

Any string

mira

Additional (Optional) qualifiers

(none)

Advanced (Unprompted) qualifiers

-paramsfile

infile

Loads parameters from the filename given. Allows a maximum of 10 levels of recursion, i.e. a -params option appearing within a file that loads other parameter files

Input file

Required

-setparam

list

Sets parameters suited for loading sequences from FASTA, PHD or CAF files. The default is not to specify the type of input file.

unspecified	(Unspecified)
fasta	(Fasta)
phd	(PHD)
caf	(CAF)

unspecified

-expdir

Input file format

emiraest reads any normal sequence USAs.

Output file format

emiraest outputs a graph to the specified graphics device. outputs a report format file. The default format is ...

Output files for usage example

File: EdIt.log

Directory: step1_info

This directory contains output files.

Directory: step1_log

This directory contains output files.

Directory: step1_results

This directory contains output files.

File: step1_in.fasta

>gnlti136477494
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGCGTGGTCGCG
GCCGAGGTACGCAGTGACACCAACTGTTGGAGTAACAATGACATCCGCTATAGAAAATAT
CTTCTGGTGAAACTTTAGTTGACGATACCTCATTTTCTGGGCATTTAGATACTCATGACT
GTGAAATGAACCGTACACAGCAAGACCTACTCGCACATCCCATCCTAGCTCACCCTTATT
CATATTCTCTAGGTGTCCAGAGACTGTATTGCTACACTCCGATCCGATTGTTACATAAAT
GTGACAAGCGCATGGNCTCTATTTCTGGTAGAGTCACCTCCACAGTTGTCCATCCGTATT
TGTCTGATAATTTGGAAATAGCGTTAGAACAACAAACTCTGATATCGTCGGAGCAGTCAT
CAAACCACTTTCCGTATTTTGGCATTTTTATGTCTGAAAACGCATAGTTTGCGGATTTTA
GCAAGGGCAGACCTACTTTGGGCACTTTTAGGTCGGATGAAAGGTCCCCAGCCATAGCTG
CATTAGCAATGAGTGCATCCTCGACTGTTTGCTGCAGAACAACGAGCATCCCAATGGTAT
AGTTTACCGGAAGAACTCCTTCATGTGGCGCACGGCCAAAAGTCGGTTGAAGCCACTAAA
CACAAAGAGCTGCTGGAGTCTTAAGATTCTCCTCATCGAAACCAGAGCATAAGGACAAAC
CACACCACCAAGCTGCGATCACTGGAGATCTCCGTAATTTGCTTATGGATGATTTTTACG
GCCTATGGGATTTTCGGTATCCGGCCCGTTCTTGTTTTGTTGGCCAATAAGGGCCAAAAC
TAAAGGTAAAAATGATTTTTAATTCTAATGGCTCATTTGCCCTTTT
>gnlti136477495
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCAATTCATATTTATAA
ATGTATTTGCATCGATATTCCACGATATACAATTATACAAACAGTTCCCATCATCCTCAA
TTATCAACAAATGAAGCTGAGCAGAAACATAAAGAAACACAAACTGCAAACAATTTTAAC
CCACACAGTAAACCACTTAAAATGCTCAAGAAAGTAAAAGTCAAGATTTTTTCAATGCTG
TTTCATTTAGAAGCTTCATCAACACGAGATTCATTACACGAGATGTTTAGAGAATACTAC
ATGAACACGAGCCCTGGTTTTCTTTCTCCGACTGGTTCTTACCTGTCTTTTTCTTGACAA
TAGCAGGCTGTACAACAACGTGCATTGTAATAACTCCTCCAGGAAGGTCACCGTGATTTA
CTCTAGACTCGGCAAGTGTTTTTCCATTTTCCAAAACCTTTCCAGCATGAATTAATTTCA
TATCATTCACCGACTTTGGCAACACCGATTTATCTTGAGGGCACTCTGAGAAAATCCGTT
GTTTTAGAGGTTGGATTGGTGTCGACGATGAGTTGACCCATGACTTATATCGGTCATTCA
TTTTCTAAATTTAAGTCGAGTTGTCGTTTCTTCACCATAGTACCCACCTTTCTGATTTTG
TGGTAGTAAATTCGTGAATGTTAAAATAGAGAAAATATTCAATTACAAGTAACCGAAACG
TAATTAAATGGTATATGACGAGTTACATCAATGACACAGGTAATACCATAGGTCATATTT
AAATCTTAGTAAATTATTGGATTAATTATGGTGTGGGTATG
>gnlti136477496
ACGAGCTGGATCCACTAGTACGGCCGCCAGTGTGCTGGAATTCGGCTTAGCGTGGTCGCG
GCCGAGGTACCTAGATCATTTTTCAAGATAATCAACATGTAAAGTGTAAACCAACAAAAG
GACACTATTTCAGACCTAACATGGCCAGGTATCTACAGCAACCGGCTTCGTTTTGCATTT
ATCGAAGCAGTTTCCATGTCCCCAACGAAGAAAAGGATTTTATCCAAAATACTTAAACTT
GGTCGTCCTTCATCTATCGTTTCCGATCCTCCGTCATTAATCGACTCAGATGCTCGTGAT
TCTGTTTGTCTCGATCCCAAATGCCGTTGAATTTGACCTTGATGAACTAAGACATAGTCA
TCTCCTTCCCTTATTATCTTCAAGCCCAACCCAACTCGATCACATCGATCTTGAACGATG
TAGACTTCTTTCCATGATTTAGAATCTACAGGGGCATAAGATGTGGCCCGATCAATCCCC
CATCTTTCTTTGAAAAGGTCAGACCATAGCGTGTTATCCGANGCCATGTCTCTCCATTTC
CTGCATACCAATTGAGCAGCTGCGAGATTTTGATGATCCCAACAACAGAAAATCTTCAGG
GCAGAGATCCGCTGGCCATTTCTCCATTATCTTTAGCTGGCCCGGGCGGGCGCTCGAAAG
CCGGATTCTGGCGATATTCATCACACTGGCGGCCGTTGAGCATGGTTTTGAAGGGCCAGT
TCGGCCTTTGTTGGTGGATTTCATTTCCTGGCCCGCGTTTTCCACGTCGTACGTGGAAAC
GTGCGTTACCAAGTTTATGCCTTGCACAATCCCCCTTGCCGCTGGGTTCTTGCGAAGGCG
GCGGAGGGCTTCCAGCGGTGGCGCGGATGGAATGGAGGCGGGGGGGCCTTTGTGGGGGGG
GGGGGTTAATT
>gnlti136477497


  [Part of this file has been deleted for brevity]

GTCATGTGTGGACGGCGAGCGTGACTCGGCGCGAGGGTGGATGTGATGAGGATTAGCGTG
AGTGGTGCGATAGCGCTGT
>gnlti136479888
CCGGTCCATTCCATCTTACTGTACCCTCGGCTCTGCTCTCGGTTTAGTTGGTGCTCTAGT
GCGCATGTGTCGGGTCGTCGCTGCGTCGGGGTCGGGTCACGCCTCCCACTGAGCCGCGCT
CTCGTCCCTCAGCCGCGAGTCGGTATACCACCACGTGCAGTAGCGCGGAGCCGGCACGGG
CTCGAACACAGGCACATCGCGCGTCAATAACACGTCGTGGCGAGGAGGGCCGCTACTTTT
TGTTGTCGCTGGCACGAGAGCTATGTCGAGTAGAGTATCGGCGAGTGGTCGAGTGCACGT
GCAGCGGTGGAGGAGTCGAGCGTCACGCGCTATCTCGTGTCGGTTCGTTACGAGCGTGTT
GGGGTAGCGGCGACGGTAGGGCGCAGTGAGCGCGTGGTGGTAAGCTCGATCGTGTAGTGC
GAGGCGTTCGCAGCGCGGTAGTTGATGCCAGGGCTGGCGCGCGGGGGCGGACGCGGGTGG
GGGTAGGGGGGATCGTGGCGGGGGGTAGAACCGGCGAGGGTAGGTGAGCGCCGACGGGGG
TGTGGGCGGGGCGGGAGGAGGAGTGGGGAGCGTAGTGAGAGGACGCGGGCGTAGGTGAGC
GGTCGCGTGCGGTAGGCGGCGGCTGCGGAGTCTGGGTCTGTTGGTGGTGAGGTAGTTCTG
TGCGTCGTGGTTTGTCTCGTTTTAGTGCCGGTCGTACCGGCTGATTTGGTGGCAATCGGC
GGTGGGTGTTGTTGGCGTTGCGCGTGTTGCTGCTGTCGGAGTCGTTTGGGCTTCTGTGTG
GCGTAGTTCCGTGTGTGTCTGTCTCGTCGCGCGGTCGTGCGTTCTGGTCGGTCGCTGTGC
GCGGTAGCGCTTTTGGTGTGTTGGATGTGTCGTGTCGTGGTGTGTCTATGAGCCTCGCGT
CTGATCGTCCGATCGCGTCGCTTGCTTGGTCGCGAGTTCTGTAGCCGATGTCGAGTCGGT
GCGTTCATCGTGATGTCGTGTAGCGTATTCTACATCTTGCGTGTTCGAGATCGTCTGATC
TTCTGCCTCGTTGTTCAGATTCGTACGCTCTCGTTTCGCGCTATTCGTTTAGTCGTGATC
ATTTATCTTCTTCTCTGTGTGTTCTGTCTCGCCAGCCCTTCTCATATGTCGTGACGACAT
TGATAGCATCCATTAGTACGTCTGTCGTGGCGTCGCTTATAGGTAGATTTATCGCTCTCC
CTCTGTGAGTGCTGATGCGAGTTCACGATCCGTTCATTCTCATCGTTTGGTGAGTCCTGA
TGACGATGAGTTCTGGCATACCGTATGATCCATTATGCTCCTCCATCTCCACAGTGTAGT
CCGTTACATTCGTCCGGTCCGATTCATTGGCTATTGTTACGTGACCCGTATCGTACGCGG
TTCGTCGGGCTGCGGGCCTAGTGTAGCGTGGTCGTCGCGTACTTTTGAGTGAGTTAGCTG
CCGCCCGAGTCGTACTCGAACGGTCTACGTGGTTCAGGCATACCGCATGTACGAGTGGTG
TGTCGTTCCATTCGTCCGTGACTAGTTCCGTGTGCGCATACATTGTCGTTCATGTATTGA
TTGTCGTGCTTGTGCGTCGTGTTATTTGGTTCTGTCTGTACTGTCGTCGTGTGAGCATGA
TGTCGTCTGATTCGTTGGCACTTAGGCGGTGCTGGTCTCTAATGCGTGTGTGTGTGCTGT
AGTATGTACTGTCAGTTGATTGGGTGCCGGATCGCGGGGTTGGTGGTTTGTGTGGTTCTG
GGTCATTCAGGGGATGAGTATGCTTAGCCCATTTCT
>gnlti136479889
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXGTTAGATTAAGGGGGGTTGTGCGAGAATCAAGGGCGGAGGGGGGGTAGAGGGAGCGG
AGAGGGTGGAGCGCGGGGGGGAGGTGGGGGTGGGGGGGCGGGAGAATGGCAGGTGCGGGG
CTGTCGGGGGAGGGAGGGGGGGGGGGGGGAGATGGGGGGTGGTGGGGGGGGGTAGGTGGG
GAGGCAGAGGGGGGGGGGGGGGAGGGGGTGGGTGTGGGTGGGGGCGGGGGTGGGCTGGTG
GGGGGGGAGTGGCGTGGCTGC

File: step1_nosnps_remain.caf


DNA : gnlti136477494
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGCGTGGTCGCG
GCCGAGGTACGCAGTGACACCAACTGTTGGAGTAACAATGACATCCGCTATAGAAAATAT
CTTCTGGTGAAACTTTAGTTGACGATACCTCATTTTCTGGGCATTTAGATACTCATGACT
GTGAAATGAACCGTACACAGCAAGACCTACTCGCACATCCCATCCTAGCTCACCCTTATT
CATATTCTCTAGGTGTCCAGAGACTGTATTGCTACACTCCGATCCGATTGTTACATAAAT
GTGACAAGCGCATGGNCTCTATTTCTGGTAGAGTCACCTCCACAGTTGTCCATCCGTATT
TGTCTGATAATTTGGAAATAGCGTTAGAACAACAAACTCTGATATCGTCGGAGCAGTCAT
CAAACCACTTTCCGTATTTTGGCATTTTTATGTCTGAAAACGCATAGTTTGCGGATTTTA
GCAAGGGCAGACCTACTTTGGGCACTTTTAGGTCGGATGAAAGGTCCCCAGCCATAGCTG
CATTAGCAATGAGTGCATCCTCGACTGTTTGCTGCAGAACAACGAGCATCCCAATGGTAT
AGTTTACCGGAAGAACTCCTTCATGTGGCGCACGGCCAAAAGTCGGTTGAAGCCACTAAA
CACAAAGAGCTGCTGGAGTCTTAAGATTCTCCTCATCGAAACCAGAGCATAAGGACAAAC
CACACCACCAAGCTGCGATCACTGGAGATCTCCGTAATTTGCTTATGGATGATTTTTACG
GCCTATGGGATTTTCGGTATCCGGCCCGTTCTTGTTTTGTTGGCCAATAAGGGCCAAAAC
TAAAGGTAAAAATGATTTTTAATTCTAATGGCTCATTTGCCCTTTT

BaseQuality : gnlti136477494
7 7 7 9 15 19 24 20 20 20 23 23 29 29 26 21 19 16 9 10 19 25 29 40 40 40 40 29 29 34 34
34 34 35 37 37 40 37 37 32 29 29 33 34 30 34 34 34 35 35 35 40 39 35 35 35 35 35 39 40 45 45
45 45 35 35 35 35 35 35 40 35 35 35 35 35 35 37 37 37 35 45 45 45 45 35 39 35 35 35 35 35 35
35 37 35 35 35 35 35 35 35 35 39 39 37 37 37 39 39 39 39 39 45 37 35 35 39 39 35 37 40 40 40
37 40 40 40 40 40 40 40 56 35 35 28 25 25 25 34 34 35 35 35 35 35 39 39 45 46 46 46 46 46 46
42 42 42 46 39 35 35 35 35 35 35 35 35 35 45 40 40 40 46 46 46 46 42 42 40 46 46 51 51 51 39
39 39 39 39 35 46 46 46 40 40 42 46 40 40 40 40 37 37 40 45 45 45 45 45 45 45 45 40 40 40 46
46 46 34 37 37 48 48 48 46 44 44 36 33 32 32 25 25 27 32 33 36 39 44 46 46 46 46 46 46 46 46
40 39 39 39 33 33 32 27 22 22 26 27 33 36 44 44 48 48 19 16 8 8 14 19 28 36 39 44 46 40 39
36 33 32 32 32 32 32 32 32 32 32 34 32 32 32 32 23 13 12 15 19 25 33 33 25 18 10 10 19 21 33
40 40 25 18 4 0 4 24 24 32 32 26 26 32 32 32 32 32 32 32 33 36 36 33 25 19 15 15 19 22 32
32 32 27 19 15 15 19 19 15 26 27 26 28 28 32 32 27 26 26 19 23 27 32 32 25 25 10 8 8 19 19
26 19 18 18 26 48 48 48 48 40 34 29 32 32 32 32 32 32 32 10 19 10 10 19 19 32 48 48 48 48 48
48 48 48 29 19 18 14 12 19 13 15 15 29 30 32 26 21 21 12 12 9 7 8 19 23 20 14 12 7 10 19
21 19 7 7 6 10 10 10 10 19 12 12 11 11 12 19 24 39 32 26 19 17 8 8 10 19 21 25 25 23 29
31 16 9 7 11 11 16 14 15 19 14 8 8 9 15 11 11 6 6 7 9 16 24 19 14 12 7 7 14 16 16
12 10 10 10 15 29 40 28 25 9 10 6 6 8 6 8 15 13 19 12 21 18 16 12 19 7 7 7 11 8 10
20 15 14 14 7 9 12 12 18 19 24 24 21 11 11 8 8 9 8 15 6 7 14 14 20 18 14 13 11 9 9
7 7 11 11 12 19 23 25 16 10 10 10 15 16 24 14 14 13 21 10 15 11 7 7 10 14 9 7 7 19 13
12 12 12 12 15 25 25 25 21 21 8 8 12 21 12 10 10 14 14 10 13 10 7 11 10 10 16 14 9 9 10
9 16 19 27 19 19 10 7 11 9 13 10 10 7 7 9 9 11 14 14 12 18 14 13 8 8 8 7 13 7 7
11 8 10 12 10 8 8 6 6 8 8 8 7 7 6 9 9 9 9 9 8 9 9 8 8 11 12 6 7 7 7
12 18 13 8 8 6 6 10 7 7 9 9 10 9 10 9 11 7 7 6 6 9 9 14 14 13 11 9 6 6 6
6 7 8 7 7 7 6 6 8 8 8 6 6 8 7 7 13 10 9 9 9 9 9 9 10 9 7 6 6 8 6
6 8 6 7 10 10 8 6 6 10 8 6 6 6 6 9 9 9 7 8 10 8 7 7 6 6 8 7 7 7 7
7 6 8 8 7 7 7 9 9 9 9 10 7 7 10 6 6 8 8 8 6 8 9 8 8 8 9 12 12 7 7
6 8 6 6 8 7 8 8 6 6 6 6 8 7 7 7 7 7 7 9 8 8 6 6 6 6 7 7 7 7 7
7 7 9 9 7 7 13 8 6 6 6 13 7 7 10 11 13 13 9 9 9 6 8 7 7 7 6 9 9 6 6
9 6 4 6 4 6 6 9 8 9 9 6 6 6 6 6 15 8 

Sequence : gnlti136477494


  [Part of this file has been deleted for brevity]

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXGTTAGATTAAGGGGGGTTGTGCGAGAATCAAGGGCGGAGGGGGGGTAGAGGGAGCGG
AGAGGGTGGAGCGCGGGGGGGAGGTGGGGGTGGGGGGGCGGGAGAATGGCAGGTGCGGGG
CTGTCGGGGGAGGGAGGGGGGGGGGGGGGAGATGGGGGGTGGTGGGGGGGGGTAGGTGGG
GAGGCAGAGGGGGGGGGGGGGGAGGGGGTGGGTGTGGGTGGGGGCGGGGGTGGGCTGGTG
GGGGGGGAGTGGCGTGGCTGC

BaseQuality : gnlti136479889
7 10 19 19 9 9 10 17 29 25 28 19 14 9 9 19 27 29 33 34 34 29 26 26 22 22 26 26 32 33 35
35 42 42 34 34 34 29 29 29 37 37 40 37 37 37 40 46 51 56 56 56 51 51 51 42 40 40 45 35 35 35
35 33 33 35 35 35 35 45 39 34 34 34 35 35 35 35 35 35 39 40 40 40 37 40 40 48 44 37 35 37 37
40 40 40 45 51 51 40 35 35 35 35 35 42 44 44 44 48 44 44 44 44 48 44 56 45 45 45 45 40 40 43
42 46 40 37 37 37 37 37 44 42 42 42 42 42 42 46 42 42 42 42 42 35 35 35 33 33 23 23 23 29 29
35 35 35 40 40 40 35 35 35 32 32 35 33 37 37 29 23 15 21 16 25 21 35 35 35 35 32 32 32 35 42
56 56 42 42 29 28 24 32 32 35 35 35 33 22 22 29 29 21 17 20 24 24 29 50 37 47 44 50 44 44 29
28 28 29 29 29 35 35 35 35 42 37 44 40 40 35 42 37 42 44 56 42 42 23 23 22 31 31 46 46 56 56
44 44 35 24 19 19 19 21 28 28 32 32 30 29 29 29 32 42 42 42 35 32 32 30 27 30 33 33 42 36 29
35 35 35 29 29 32 34 30 33 28 28 28 28 28 27 27 13 13 13 27 33 42 37 34 34 34 34 33 29 32 31
34 29 29 29 21 14 12 7 7 13 16 24 29 29 32 40 40 37 37 40 33 37 25 25 13 14 15 25 25 35 35
35 37 37 40 40 42 42 56 51 46 34 34 32 32 29 29 31 29 29 21 18 17 17 17 19 22 22 29 29 23 17
17 17 24 29 25 25 20 20 16 8 8 10 21 20 29 23 27 27 33 37 37 37 37 30 27 27 33 27 28 26 26
26 26 24 24 27 32 29 29 30 33 33 40 32 32 22 19 13 9 9 15 23 37 32 29 19 11 9 9 12 16 17
19 18 18 15 23 24 29 30 20 16 16 18 20 26 27 27 27 18 14 9 9 17 18 26 19 13 7 7 10 16 20
29 29 29 29 27 29 29 29 29 29 25 14 12 6 6 8 12 16 23 21 23 23 26 29 29 20 20 20 22 18 11
10 9 9 9 16 24 11 11 11 14 14 21 16 13 7 7 12 12 16 10 8 6 6 8 8 11 13 17 24 20 22
25 25 32 33 34 29 29 24 24 22 19 17 12 12 10 11 13 20 21 10 10 8 8 6 6 8 8 9 9 9 8
7 6 8 6 6 11 14 20 22 22 23 17 13 9 10 10 11 14 9 9 9 8 8 6 6 8 8 9 9 7 7
9 9 9 12 9 9 8 8 9 11 16 8 8 6 6 8 8 9 11 13 24 24 14 8 6 6 10 6 10 17 13
8 6 6 8 8 8 16 17 20 15 10 10 8 8 8 8 8 8 8 6 6 9 9 12 12 9 10 6 6 8 6
6 7 8 9 10 9 8 10 9 8 8 8 8 6 7 11 10 9 9 10 9 9 9 9 9 8 6 6 6 8 6
6 10 8 8 6 8 6 6 8 6 6 8 8 9 9 9 8 7 7 6 8 6 6 6 8 9 12 14 12 11 7
7 13 8 8 8 8 6 6 8 8 6 6 8 6 6 8 8 10 10 9 8 6 6 6 6 8 8 8 9 9 9
8 8 6 6 8 6 6 8 6 6 8 8 12 10 10 8 8 8 6 6 8 6 7 6 8 8 8 10 8 11 8
8 9 6 6 6 6 8 6 6 6 8 13 15 14 11 9 9 9 9 9 11 13 10 10 10 10 9 6 6 6 7
7 10 7 6 9 9 8 8 6 6 6 6 8 8 6 6 8 8 9 8 8 9 9 8 8 8 8 8 6 6 8
8 9 9 6 6 6 6 8 8 8 6 6 8 8 6 6 8 9 8 10 10 13 9 9 9 11 11 10 10 12 12
10 9 9 9 9 9 11 8 10 13 8 8 8 9 9 9 13 13 27 30 30 27 20 8 8 6 6 8 6 6 8
8 6 6 8 6 6 8 8 10 8 8 9 9 9 10 9 9 9 16 17 13 13 6 6 8 6 6 8 8 9 9
8 8 9 10 11 11 17 13 11 13 11 10 11 6 4 4 8 11 11 9 9 8 8 8 8 8 8 9 9 10 12
10 9 6 6 9 6 6 8 6 7 9 10 9 10 13 13 9 9 9 8 

Sequence : gnlti136479889
Is_read
Padded
Insert_size 500 5000
SCF_File "gnlti136479889.scf"
Clipping QUAL 724 723
Align_to_SCF 1 981 1 981

File: step1_snpsinSTRAIN_default.caf


DNA : gnlti136477498
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGCGTGGTCGCGGC
CGAGGTACCATCAAGTTAAGAAAACCAAGACATGTCCACAATTTTCACACATTCATTAAC
GCGTTAGAGCTGGCCTGGCCTCTTCAGTATCTGCACAACCTGGCCTCTCGGTTAAAAACT
GTTCCCAAAAGGCATCATTGACTCTCGCTTGCTTCTTGTTACTATGCGCATCACGGGATG
AAGATAATAAATTCCGGTCACCACCAACGTCATCATTACCACGCCTTGTNCTATCCTCGG
GAGGATCCACTTCAATAATTTCGACACGGTCAATGGAGGTTTGACTTTTATTATTGAGCT
CTNAACTAGAAGACGCAAGAGAGAGATTCAAGAGGCAGGACAGATNATCGTCACCCTCGT
CGTTATTTGAAGCCACGGTGTGGCTGCAGTGCAAAGAAAACAGTTTGGGCTTTTCGGGCC
TGTTCTTAANGTGAAAGACGAAGCCTCAGCGGTCGATGAAAGCTCCGAACCTGCGGTCCT
AATGCGCAAATCGTTCCATCCATCTTCGTTGGAGCTCTGCGTGCTATAAAGGGAAATTAA
GTTGACGTCCGAGACAGCTGGCGACAGCTCGAGTCTGAGTTCGGGCCTCGAGTGTTCTGG
TTGTCGAATTGAATATTTCATGTGCCTGATCGGCCCGAGGGAGCTCTCTTCTGGTATACG
CCGAGAATCCATTTGTGAGCTCTGGGAAGGTGTCAAGAATTAGGTTGGAGGGCTTTTCTA
GGAAATAGACCGGTCCGGTTTGGTCATGTTCTACCGTTGGTTGGTTTTTATTTATTGGTT
GGATTTTTTCTTGACCCGAATTGGCTTAATTTTTTCGGGAGGGGAAATTTCC

BaseQuality : gnlti136477498
8 11 11 9 9 10 21 21 34 34 34 39 33 20 19 19 10 10 19 32 40 48 48 44 46 34 34 34 34 34 34
39 40 40 40 40 40 29 29 29 30 30 30 35 35 35 35 35 35 40 40 40 40 45 45 45 45 45 45 51 51 51
39 34 34 34 34 34 34 35 35 35 35 35 34 34 34 35 35 35 40 40 56 51 51 40 40 40 40 40 40 40 40
40 40 40 37 40 35 39 39 39 39 35 39 35 35 35 35 39 39 35 35 35 35 35 35 35 40 40 51 51 35 35
35 35 35 35 43 43 51 56 51 45 45 45 45 45 45 51 51 51 39 39 34 34 34 34 35 39 51 45 45 45 45
40 40 40 40 46 46 51 51 51 51 51 40 35 35 35 35 35 35 39 39 39 39 42 42 42 39 37 40 40 40 40
39 35 35 42 46 46 51 51 51 51 51 45 40 40 40 40 40 35 33 33 33 33 33 34 35 35 35 40 35 34 34
34 34 34 45 51 51 51 51 51 46 46 46 40 40 40 39 34 34 39 36 33 25 19 15 15 19 19 19 10 10 14
8 9 19 14 19 26 22 22 26 23 19 10 10 10 10 17 22 24 25 32 32 33 36 36 40 24 19 8 8 9 10
10 23 32 34 32 32 26 15 19 4 0 4 19 19 23 14 14 11 10 11 17 17 32 26 26 25 25 22 22 23 23
12 12 12 7 7 9 7 7 8 8 8 19 24 48 32 25 21 16 22 19 19 15 10 15 8 8 12 10 7 8 9
15 19 27 32 26 32 32 19 19 9 9 9 9 9 9 19 25 33 24 15 4 0 4 8 19 21 17 15 10 17 21
32 24 24 9 9 9 19 29 33 36 36 33 27 23 12 12 8 8 7 19 8 8 7 12 10 16 18 29 22 26 16
19 4 0 4 25 25 33 33 32 19 15 15 15 19 21 29 29 23 19 15 15 19 12 22 8 10 7 7 9 7 8
13 11 9 11 19 19 19 7 7 11 17 19 13 13 15 17 13 11 7 7 7 12 9 10 10 10 9 9 9 9 9
19 14 17 23 19 10 13 8 10 9 9 6 6 6 9 15 15 7 7 9 7 10 10 4 0 4 9 12 7 7 7
13 14 10 10 6 6 8 7 10 14 12 12 9 9 6 10 13 16 21 21 11 11 6 6 8 16 17 18 13 11 15
7 7 7 7 11 12 10 12 10 19 11 10 19 7 7 12 19 22 24 21 14 14 19 18 13 10 6 6 6 6 6
16 12 12 19 25 27 12 10 11 10 7 6 6 6 8 9 11 21 20 29 20 20 18 18 18 18 15 16 13 9 6
6 6 6 7 6 6 8 6 8 11 13 17 15 15 20 21 26 32 29 14 10 11 11 11 9 10 10 16 16 16 18
17 19 20 15 12 12 12 14 14 17 22 18 19 14 14 14 20 16 13 13 11 10 10 7 6 6 6 9 9 12 12
16 16 19 8 8 11 11 17 15 13 11 17 16 13 15 8 6 6 6 6 6 6 13 11 9 12 7 13 13 16 17
17 19 10 9 14 15 15 8 8 8 15 10 8 7 9 8 8 6 6 9 9 12 21 14 13 11 8 8 11 11 6
6 9 6 7 7 9 19 10 10 8 8 8 7 7 13 7 8 9 10 7 7 9 9 8 8 12 16 10 10 9 7
6 6 9 9 7 7 9 9 10 10 6 6 11 7 7 6 6 8 6 8 12 9 6 6 10 6 6 9 10 6 9
8 6 6 6 8 6 6 6 6 6 9 10 9 9 7 7 7 8 9 7 7 7 7 6 6 10 6 6 6 6 6
6 6 10 8 8 8 8 6 6 8 6 6 6 6 6 6 6 8 6 7 10 7 7 9 7 7 7 7 7 8 7
7 7 7 7 7 9 7 7 7 7 7 7 9 7 7 9 8 6 6 7 10 7 7 6 6 6 6 6 6 6 6
6 6 9 8 9 9 8 8 13 13 13 8 9 9 6 7 6 7 7 7 8 15 8 8 

Sequence : gnlti136477498


  [Part of this file has been deleted for brevity]

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

BaseQuality : gnlti136479884
22 29 17 17 17 29 17 11 10 6 6 8 15 19 28 16 17 15 28 28 33 32 34 25 15 23 27 33 33 33 39
40 46 46 40 40 34 34 34 29 35 35 40 40 45 45 40 40 40 51 45 45 45 45 45 45 45 51 56 56 56 40
37 35 34 34 34 35 35 35 40 40 40 40 40 40 45 45 51 34 33 33 33 33 31 35 35 34 34 34 35 35 35
40 40 40 40 39 39 40 40 37 37 40 45 45 51 51 56 56 51 51 51 51 51 51 51 56 56 51 51 51 51 51
51 51 45 45 45 45 40 40 40 40 40 39 51 51 46 46 46 56 48 48 48 48 36 36 33 27 23 15 15 19 23
27 40 40 44 46 46 48 40 40 40 40 40 40 42 42 42 46 56 42 42 42 46 46 51 51 51 51 51 51 51 51
51 45 40 40 40 37 37 38 35 33 33 34 34 34 35 40 40 37 40 37 34 34 32 32 32 37 56 56 45 45 40
40 56 46 46 42 40 35 39 39 37 37 37 45 45 45 45 45 40 40 40 40 40 40 40 45 40 37 37 37 35 35
35 35 35 40 45 43 56 56 51 51 51 51 51 51 51 51 51 40 40 37 39 35 35 44 50 50 42 35 25 25 28
28 28 35 46 46 45 45 45 45 45 51 56 56 56 56 56 56 51 51 51 51 51 51 56 56 56 56 51 40 40 40
40 40 40 51 45 45 45 45 45 40 40 40 40 40 45 51 51 51 56 56 56 56 51 51 51 45 45 45 45 45 45
40 37 37 45 40 40 40 45 42 40 40 46 46 30 29 28 45 45 40 40 40 45 45 40 40 40 37 37 40 42 42
46 56 56 56 45 40 37 37 37 39 40 40 40 39 39 40 40 40 40 51 56 56 56 56 56 48 46 18 18 20 29
37 40 40 40 46 40 39 36 33 32 32 32 32 32 32 33 36 39 39 39 39 32 34 34 46 40 40 40 40 39 36
40 40 34 34 22 48 31 40 40 44 44 46 46 46 46 46 46 46 40 40 40 40 39 39 22 21 21 33 33 42 46
35 35 35 32 32 29 34 34 29 29 39 39 40 40 40 40 51 46 37 25 25 25 29 29 37 40 40 40 40 40 37
37 35 34 34 34 32 32 32 33 29 32 25 29 37 31 31 18 18 18 48 48 48 56 56 56 46 46 46 46 40 28
28 24 30 30 31 31 29 32 32 29 35 35 45 35 21 26 11 11 11 27 27 45 45 40 40 46 35 29 29 29 29
26 32 29 28 28 32 27 25 20 18 18 10 10 6 6 9 13 10 10 12 14 12 12 15 21 28 19 15 6 6 9
13 22 21 11 9 6 7 13 16 14 11 11 11 16 18 26 24 29 25 24 16 16 11 8 10 17 20 25 26 29 29
34 29 26 26 29 29 26 26 20 25 25 29 33 33 33 40 34 29 27 16 15 6 6 8 16 19 17 13 8 13 9
9 9 8 8 16 25 25 19 14 8 8 8 14 13 11 10 14 14 23 23 27 20 15 15 20 23 25 20 19 17 10
8 12 12 15 21 23 29 27 27 23 23 19 14 7 7 6 9 17 16 18 15 9 6 8 8 23 31 24 13 11 9
7 7 15 19 10 10 7 6 9 9 18 17 10 9 11 8 8 11 16 15 19 15 14 19 9 9 8 8 13 18 27
31 32 24 17 14 14 14 11 15 15 10 11 15 21 21 21 21 17 12 6 7 8 6 6 15 13 13 11 8 8 8
13 10 9 9 9 15 15 24 17 14 7 6 11 8 8 8 8 8 8 10 11 10 10 12 10 10 8 8 9 14 15
6 6 6 6 9 11 9 9 9 10 9 9 9 13 16 16 13 6 6 9 9 8 12 6 6 8 8 9 9 9 9
9 13 10 6 6 8 8 10 13 7 6 10 9 9 10 12 15 6 6 8 6 6 8 13 9 11 8 8 9 9 10
6 8 6 6 10 9 9 9 11 9 7 7 8 8 6 7 11 8 10 8 8 6 6 8 6 6 6 6 8 6 6
10 8 9 9 7 8 17 18 19 15 13 13 10 6 6 9 9 11 9 10 10 12 10 10 9 9 8 8 10 12 8
8 8 8 10 10 10 12 10 9 9 9 9 10 9 8 8 6 6 8 8 6 6 8 8 10 10 14 11 11 9 9
10 8 8 13 11 10 10 8 6 6 8 8 8 8 10 10 6 6 9 6 8 10 9 9 9 9 9 9 9 16 9
9 9 10 13 13 12 8 

Sequence : gnlti136479884
Is_read
Padded
Insert_size 500 5000
SCF_File "gnlti136479884.scf"
Clipping QUAL 31 434
Align_to_SCF 1 999 1 999

File: step1_res_cafstrainnames.txt

step1_snpsinSTRAIN_default.caf	default
step1_nosnps_remain.caf	remain

File: step2_reads.caf


DNA : default_c1
TTTMGCGTGGYCGCCCGGSCAGGTACACAAACTCAATGCTTTTTCCTGCAGACAAAGAGT
TGATCCATGACGGGAAGAAGTATAAGTTACCGGACTTGGTGAGGCCCCACAGAGGACCAT
RCAGGTTTGAKATGTAAAGCTTCAAGTTCTTCAAGTTCTTGGAGGACTTGTTGGTAATTG
TTGTCGAGTATCTRTAGTAAGTTTTTCCGTTGAGCACCCATGAACTKGTCACCCTYTGAG
TAACAGCAATTGGGCTGGTAGATGAAGCTGGAAWGCGTTTAGCCACTGGCTTAGCAGCTG
GTCTTGGATTAGTAGYGATTGGTTTAAGAGCAGGTAGCTGCACTGGTAGRAGCTGATTGT
AGCCGCTGTGACCAGAATGAAGCCTTGCTAATATACCAATAAGCGGAGYATTGTTATAAG
TGGCAGGCTCAGTTTGCTCGTAATTATCTCTTTGATCAGCGAAATTGTCATAAGCATCGG
GTCCACCAACGAYCKCRSCMGYRASCAGATTTGGRTCATTGCCCTTTCGGGTATACCAAG
TGGCATATCCGCCTCGGCAGGTCACGAACGACCTGTCAACCTTGTACCTGCCCGGGCGGC
CGCTCGAAA

BaseQuality : default_c1
32 37 43 35 43 20 48 18 49 44 39 44 44 39 39 48 55 55 50 49 48 48 50 49 49 56 55 49 55 55 55
56 56 55 55 55 55 55 55 61 55 55 55 60 60 48 43 44 44 44 48 55 55 55 55 55 61 60 61 61 61 61
61 61 61 61 55 55 55 61 61 61 61 61 61 61 61 61 61 61 61 61 55 55 55 61 49 49 49 49 49 49 60
60 49 46 46 47 46 46 50 49 49 49 49 49 55 61 61 55 55 55 60 55 55 60 60 60 60 61 55 61 56 61
61 55 49 54 54 60 45 49 49 50 65 68 68 60 60 64 58 67 70 58 58 60 58 58 78 81 87 69 57 57 63
74 74 73 72 70 62 59 59 57 56 65 58 56 54 59 54 54 56 48 68 79 70 57 57 59 59 59 76 82 73 79
85 82 82 84 90 90 90 73 86 86 76 76 74 68 68 71 80 85 79 75 76 80 83 86 81 88 88 88 84 82 80
75 75 82 86 76 74 73 78 82 63 89 79 79 83 83 76 76 79 59 74 74 86 81 83 88 82 90 90 90 90 90
90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 69 89 90 81 81 75
72 72 80 90 90 87 87 80 73 73 86 81 87 88 90 90 88 90 90 86 76 76 77 70 38 54 65 70 86 87 90
90 90 90 90 90 70 90 90 88 81 81 76 81 75 81 90 89 90 90 90 90 90 84 85 86 90 90 90 90 90 90
90 90 90 90 90 74 81 81 63 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 87 86 87 90
90 88 90 90 90 90 90 90 90 90 90 89 78 82 82 85 85 90 90 90 90 90 90 90 90 65 90 90 90 90 88
89 89 90 90 90 66 90 90 90 90 90 90 90 90 90 84 90 90 90 79 90 87 87 90 88 90 90 90 90 90 90
90 90 81 90 90 90 90 90 90 90 90 88 88 90 86 90 90 90 90 90 90 90 90 90 90 90 90 90 90 82 75
75 87 76 84 89 90 89 90 90 90 90 90 90 90 85 85 88 83 82 83 83 79 83 89 90 66 90 64 90 63 90
65 73 84 57 90 62 62 90 62 90 90 80 40 60 33 33 75 81 44 90 90 90 88 88 88 80 78 81 78 78 83
83 79 79 85 84 68 67 54 50 48 55 62 64 89 90 90 87 83 82 76 75 58 66 62 67 67 65 78 78 69 69
70 75 80 79 79 79 79 79 79 81 69 61 54 30 50 60 71 80 39 35 39 44 44 50 60 49 50 44 44 49 56
64 55 40 38 40 34 34 51 51 40 34 34 34 34 34 35 51 51 40 40 

Sequence : default_c1
Is_read
Padded
Insert_size 500 5000
SCF_File "default_c1.scf"
Clipping QUAL 1 609
Align_to_SCF 1 20 1 20
Align_to_SCF 21 507 22 508
Align_to_SCF 508 609 510 611



DNA : default_c2
TTAGCGTGGTCGCGGCCGAGGTCGCGAAACAGCTGAAGAAAGGAAAGCTCAGTCCCAACT


  [Part of this file has been deleted for brevity]

51 51 51 56 56 56 56 56 56 56 45 45 45 45 45 45 45 43 43 45 45 45 45 51 51 51 45 40 43 40 40
43 40 40 40 43 40 35 43 43 35 35 35 40 40 45 46 42 42 42 56 56 56 56 56 56 56 56 50 44 44 56
42 43 51 51 51 51 56 46 46 56 56 37 40 40 40 40 45 56 56 51 51 40 40 40 40 45 45 45 45 51 51
56 51 51 40 40 40 45 56 56 47 47 47 42 44 37 45 45 45 45 45 45 45 45 45 39 35 40 40 40 40 40
46 46 56 51 51 51 51 51 51 51 51 51 45 39 39 39 35 35 35 35 35 35 40 40 40 45 45 45 40 40 40
45 45 45 45 26 25 15 15 15 25 46 46 40 40 40 34 34 34 44 40 48 40 25 25 26 26 27 27 33 36 29
30 36 36 36 36 46 46 36 41 41 30 30 30 

Sequence : remain_s1044
Is_read
Padded
Insert_size 500 5000
SCF_File "remain_s1044.scf"
Clipping QUAL 1 323
Align_to_SCF 1 323 1 323



DNA : remain_s1045
TTTCGAGCGGCCGCCCGGGCAGGTACAAGCCAATACTACACTCTAAAGTCGTGTCAGTGC
GAGGTGAGCTTCGGAATAAGCCTGTATACCTCGGAAACAGACTTCGATTATCCGTGGAAA
ATATTTGGCCTTTGCTGAACTCAGACAGTTGAGTTTAAGCTGTTATGGGTGAGGGAGACA
TGGTGTCTGAGAAGCCTGAGTTCGTGACAAATGGGAAGGTTGAGGTGGGGAAAGATGATG
GGATAGGTAAGATGACTGACATCAACGGGCGAGATAAAAGAAGGGGAGCAGTGCGATGGA
GTGAATGAAATGGAAGAGGATAACTCAGATGGTGTGGAAGTTGAGTGTCAGGATATGGAT
GTTGTCACACAA

BaseQuality : remain_s1045
29 29 29 23 19 9 9 9 21 21 46 46 22 22 22 45 30 40 40 40 40 40 45 29 19 19 17 20 17 17 14
16 16 11 11 16 23 27 31 17 17 17 30 33 35 40 35 37 42 33 33 11 10 9 9 9 9 13 13 12 10 9
9 9 19 20 39 35 35 33 29 23 26 19 19 19 29 24 28 24 22 21 23 16 15 8 8 9 17 13 16 15 16
18 16 17 21 16 20 13 13 13 17 19 29 21 19 15 11 11 11 14 12 14 9 7 7 9 10 18 18 23 29 29
28 30 25 29 28 28 28 24 24 28 28 28 27 27 22 24 15 17 9 9 9 12 13 14 11 10 10 11 20 13 22
16 24 9 10 10 25 23 19 20 22 27 27 44 35 35 32 32 32 29 35 35 35 35 29 30 23 26 26 27 29 33
29 29 32 32 32 27 27 14 14 12 24 19 19 19 14 14 22 27 27 17 16 15 25 25 27 33 24 28 28 29 32
32 34 34 29 29 25 25 29 38 38 29 25 25 17 15 9 11 9 20 20 25 23 23 28 31 32 29 16 13 6 6
8 8 9 9 10 16 21 24 27 19 9 9 9 13 19 16 10 10 9 8 8 11 17 14 20 23 23 32 29 12 11
6 6 6 13 10 10 10 19 21 28 27 28 23 24 20 20 21 29 29 29 29 29 35 35 35 39 21 12 10 10 21
24 25 22 19 19 19 19 20 26 42 26 22 13 10 9 9 11 21 27 30 28 26 26 29 25 15 15 15 18 20 17
11 11 14 14 29 29 29 24 18 18 27 30 29 34 35 35 40 36 38 34 30 30 18 9 6 5 5 5 5 11 14


Sequence : remain_s1045
Is_read
Padded
Insert_size 500 5000
SCF_File "remain_s1045.scf"
Clipping QUAL 1 372
Align_to_SCF 1 372 1 372

File: step2_straindata.txt

# Automatically generated file
# You probably don't want to edit it.

default_c1	default
default_c2	default
default_c3	default
default_c4	default
default_c5	default
default_c6	default
default_c7	default
default_c8	default
default_c9	default
default_c10	default
default_c11	default
default_c12	default
default_c13	default
default_c14	default
default_c15	default
default_c16	default
default_c17	default
default_c18	default
default_c19	default
default_c20	default
default_c21	default
default_c22	default
default_c23	default
default_c24	default
default_c25	default
default_c26	default
default_c27	default
default_c28	default
default_c29	default
default_c30	default
default_c31	default
default_c32	default
default_c33	default
default_c34	default
default_c35	default
default_c36	default
default_c37	default
default_c38	default
default_c39	default
default_c40	default
default_c41	default
default_c42	default
default_c43	default
default_c44	default
default_c45	default
default_c46	default
default_c47	default


  [Part of this file has been deleted for brevity]

remain_s995	remain
remain_s996	remain
remain_s997	remain
remain_s998	remain
remain_s999	remain
remain_s1000	remain
remain_s1001	remain
remain_s1002	remain
remain_s1003	remain
remain_s1004	remain
remain_s1005	remain
remain_s1006	remain
remain_s1007	remain
remain_s1008	remain
remain_s1009	remain
remain_s1010	remain
remain_s1011	remain
remain_s1012	remain
remain_s1013	remain
remain_s1014	remain
remain_s1015	remain
remain_s1016	remain
remain_s1017	remain
remain_s1018	remain
remain_s1019	remain
remain_s1020	remain
remain_s1021	remain
remain_s1022	remain
remain_s1023	remain
remain_s1024	remain
remain_s1025	remain
remain_s1026	remain
remain_s1027	remain
remain_s1028	remain
remain_s1029	remain
remain_s1030	remain
remain_s1031	remain
remain_s1032	remain
remain_s1033	remain
remain_s1034	remain
remain_s1035	remain
remain_s1036	remain
remain_s1037	remain
remain_s1038	remain
remain_s1039	remain
remain_s1040	remain
remain_s1041	remain
remain_s1042	remain
remain_s1043	remain
remain_s1044	remain
remain_s1045	remain

Directory: default_info

This directory contains output files.

Directory: default_log

This directory contains output files.

Directory: default_results

This directory contains output files.

Directory: remain_info

This directory contains output files.

Directory: remain_log

This directory contains output files.

Directory: remain_results

This directory contains output files.

Directory: step3_info

This directory contains output files.

Directory: step3_log

This directory contains output files.

Directory: step3_results

This directory contains output files.

Data files

**************** EDIT HERE ****************

Notes

None.

References

None.

Warnings

None.

Diagnostic Error Messages

None.

Exit status

It always exits with status 0.

Known bugs

None.

Author(s)

This program is an EMBOSS wrapper for a program written by Bastien Chevreux as part of the MIRA package.

History

Target users

This program is intended to be used by everyone and everything, from naive users to embedded scripts.

Comments

None

CSC

Tehdyt toimenpiteet

Wiki

Function

Description

Algorithm

Usage

Command line arguments

Input file format

Output file format

Output files for usage example

File: EdIt.log

Directory: step1_info

Directory: step1_log

Directory: step1_results

File: step1_in.fasta

File: step1_nosnps_remain.caf

File: step1_snpsinSTRAIN_default.caf

File: step1_res_cafstrainnames.txt

File: step2_reads.caf

File: step2_straindata.txt

Directory: default_info

Directory: default_log

Directory: default_results

Directory: remain_info

Directory: remain_log

Directory: remain_results

Directory: step3_info

Directory: step3_log

Directory: step3_results

Data files

Notes

References

Warnings

Diagnostic Error Messages

Exit status

Known bugs

See also

Author(s)

History

Target users

Comments